-
1
-
-
0034993496
-
The Drosophila Su(var)2-10 locus regulates chromosome structure and function and encodes a member of the PIAS protein family
-
Hari K.L., Cook K.R., Karpen G.H. The Drosophila Su(var)2-10 locus regulates chromosome structure and function and encodes a member of the PIAS protein family. Genes Dev. 15:2001;1334-1348.
-
(2001)
Genes Dev.
, vol.15
, pp. 1334-1348
-
-
Hari, K.L.1
Cook, K.R.2
Karpen, G.H.3
-
2
-
-
0034791301
-
Common themes in mechanisms of gene silencing
-
Moazed D. Common themes in mechanisms of gene silencing. Mol. Cell. 8:2001;489-498.
-
(2001)
Mol. Cell
, vol.8
, pp. 489-498
-
-
Moazed, D.1
-
3
-
-
0022625954
-
Cloning and characterization of four SIR genes of Saccharomyces cerevisiae
-
Ivy J.M., Klar A.J., Hicks J.B. Cloning and characterization of four SIR genes of Saccharomyces cerevisiae. Mol. Cell. Biol. 6:1986;688-702.
-
(1986)
Mol. Cell. Biol.
, vol.6
, pp. 688-702
-
-
Ivy, J.M.1
Klar, A.J.2
Hicks, J.B.3
-
4
-
-
0023340731
-
Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae
-
Rine J., Herskowitz I. Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae. Genetics. 116:1987;9-22.
-
(1987)
Genetics
, vol.116
, pp. 9-22
-
-
Rine, J.1
Herskowitz, I.2
-
5
-
-
0025900189
-
Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae
-
Aparicio O.M., Billington B.L., Gottschling D.E. Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae. Cell. 66:1991;1279-1287.
-
(1991)
Cell
, vol.66
, pp. 1279-1287
-
-
Aparicio, O.M.1
Billington, B.L.2
Gottschling, D.E.3
-
6
-
-
0027423154
-
SIR3 and SIR4 proteins are required for the positioning and integrity of yeast telomeres
-
Palladino F., Laroche T., Gilson E., Axelrod A., Pillus L., Gasser S.M. SIR3 and SIR4 proteins are required for the positioning and integrity of yeast telomeres. Cell. 75:1993;543-555.
-
(1993)
Cell
, vol.75
, pp. 543-555
-
-
Palladino, F.1
Laroche, T.2
Gilson, E.3
Axelrod, A.4
Pillus, L.5
Gasser, S.M.6
-
7
-
-
0029820640
-
The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae
-
Gotta M., Laroche T., Formenton A., Maillet L., Scherthan H., Gasser S.M. The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae. J. Cell. Biol. 134:1996;1349-1363.
-
(1996)
J. Cell. Biol.
, vol.134
, pp. 1349-1363
-
-
Gotta, M.1
Laroche, T.2
Formenton, A.3
Maillet, L.4
Scherthan, H.5
Gasser, S.M.6
-
8
-
-
0037097940
-
Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast
-
Luo K., Vega-Palas M.A., Grunstein M. Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast. Genes Dev. 16:2002;1528-1539.
-
(2002)
Genes Dev.
, vol.16
, pp. 1528-1539
-
-
Luo, K.1
Vega-Palas, M.A.2
Grunstein, M.3
-
9
-
-
0032554793
-
Mutation of yeast Ku genes disrupts the subnuclear organization of telomeres
-
Laroche T., Martin S.G., Gotta M., Gorham H.C., Pryde F.E., Louis E.J., Gasser S.M. Mutation of yeast Ku genes disrupts the subnuclear organization of telomeres. Curr. Biol. 8:1998;653-656.
-
(1998)
Curr. Biol.
, vol.8
, pp. 653-656
-
-
Laroche, T.1
Martin, S.G.2
Gotta, M.3
Gorham, H.C.4
Pryde, F.E.5
Louis, E.J.6
Gasser, S.M.7
-
10
-
-
0028919756
-
Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: A molecular model for the formation of heterochromatin in yeast
-
Hecht A., Laroche T., Strahl-Bolsinger S., Gasser S.M., Grunstein M. Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast. Cell. 80:1995;583-592.
-
(1995)
Cell
, vol.80
, pp. 583-592
-
-
Hecht, A.1
Laroche, T.2
Strahl-Bolsinger, S.3
Gasser, S.M.4
Grunstein, M.5
-
11
-
-
0025201982
-
Position effect at S. cerevisiae telomeres: Reversible repression of Pol II transcription
-
Gottschling D.E., Aparicio O.M., Billington B.L., Zakian V.A. Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription. Cell. 63:1990;751-762.
-
(1990)
Cell
, vol.63
, pp. 751-762
-
-
Gottschling, D.E.1
Aparicio, O.M.2
Billington, B.L.3
Zakian, V.A.4
-
12
-
-
0025940629
-
The two-hybrid system: A method to identify and clone genes for proteins that interact with a protein of interest
-
Chien C.T., Bartel P.L., Sternglanz R., Fields S. The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl Acad. Sci. USA. 88:1991;9578-9582.
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 9578-9582
-
-
Chien, C.T.1
Bartel, P.L.2
Sternglanz, R.3
Fields, S.4
-
13
-
-
0031027431
-
SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast
-
Strahl-Bolsinger S., Hecht A., Luo K., Grunstein M. SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast. Genes Dev. 11:1997;83-93.
-
(1997)
Genes Dev.
, vol.11
, pp. 83-93
-
-
Strahl-Bolsinger, S.1
Hecht, A.2
Luo, K.3
Grunstein, M.4
-
14
-
-
0142134870
-
Structure of the coiled-coil dimerization motif of Sir4 and its interaction with Sir3
-
Chang J.-F., Hall B.E., Tanny J.C., Moazed D., Filman D., Ellenberger T. Structure of the coiled-coil dimerization motif of Sir4 and its interaction with Sir3. Structure. 11:2003;637-649.
-
(2003)
Structure
, vol.11
, pp. 637-649
-
-
Chang, J.-F.1
Hall, B.E.2
Tanny, J.C.3
Moazed, D.4
Filman, D.5
Ellenberger, T.6
-
15
-
-
0029048189
-
The carboxy termini of Sir4 and Rap1 affect Sir3 localization: Evidence for a multicomponent complex required for yeast telomeric silencing
-
Cockell M., Palladino F., Laroche T., Kyrion G., Liu C., Lustig A.J., Gasser S.M. The carboxy termini of Sir4 and Rap1 affect Sir3 localization: evidence for a multicomponent complex required for yeast telomeric silencing. J. Cell. Biol. 129:1995;909-924.
-
(1995)
J. Cell. Biol.
, vol.129
, pp. 909-924
-
-
Cockell, M.1
Palladino, F.2
Laroche, T.3
Kyrion, G.4
Liu, C.5
Lustig, A.J.6
Gasser, S.M.7
-
16
-
-
0028004378
-
Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1
-
Moretti P., Freeman K., Coodly L., Shore D. Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1. Genes Dev. 8:1994;2257-2269.
-
(1994)
Genes Dev.
, vol.8
, pp. 2257-2269
-
-
Moretti, P.1
Freeman, K.2
Coodly, L.3
Shore, D.4
-
17
-
-
0030964526
-
Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae
-
Tsukamoto Y., Kato J., Ikeda H. Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae. Nature. 388:1997;900-903.
-
(1997)
Nature
, vol.388
, pp. 900-903
-
-
Tsukamoto, Y.1
Kato, J.2
Ikeda, H.3
-
18
-
-
0035861202
-
The molecular biology of the SIR proteins
-
Gasser S.M., Cockell M.M. The molecular biology of the SIR proteins. Gene. 279:2001;1-16.
-
(2001)
Gene
, vol.279
, pp. 1-16
-
-
Gasser, S.M.1
Cockell, M.M.2
-
19
-
-
0028897013
-
Mutation in the silencing gene SIR4 can delay aging in S. cerevisiae
-
Kennedy B.K., Austriaco N.R. Jr, Zhang J., Guarente L. Mutation in the silencing gene SIR4 can delay aging in S. cerevisiae. Cell. 80:1995;485-496.
-
(1995)
Cell
, vol.80
, pp. 485-496
-
-
Kennedy, B.K.1
Austriaco Jr., N.R.2
Zhang, J.3
Guarente, L.4
-
20
-
-
0030916153
-
Redistribution of silencing proteins from telomeres to the nucleolus is associated with extension of life span in S. cerevisiae
-
Kennedy B.K., Gotta M., Sinclair D.A., Mills K., McNabb D.S., Murthy M., et al. Redistribution of silencing proteins from telomeres to the nucleolus is associated with extension of life span in S. cerevisiae. Cell. 89:1997;381-391.
-
(1997)
Cell
, vol.89
, pp. 381-391
-
-
Kennedy, B.K.1
Gotta, M.2
Sinclair, D.A.3
Mills, K.4
Mcnabb, D.S.5
Murthy, M.6
-
22
-
-
0024959918
-
Transcriptional silencing and lamins
-
Diffley J.F., Stillman B. Transcriptional silencing and lamins. Nature. 342:1989;24.
-
(1989)
Nature
, vol.342
, pp. 24
-
-
Diffley, J.F.1
Stillman, B.2
-
23
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas A., Van Dyke M., Stock J. Predicting coiled coils from protein sequences. Science. 252:1991;1162-1164.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
24
-
-
0029145638
-
Predicting coiled coils by use of pairwise residue correlations
-
Berger B., Wilson D.B., Wolf E., Tonchev T., Milla M., Kim P.S. Predicting coiled coils by use of pairwise residue correlations. Proc. Natl Acad. Sci. USA. 92:1995;8259-8263.
-
(1995)
Proc. Natl Acad. Sci. USA
, vol.92
, pp. 8259-8263
-
-
Berger, B.1
Wilson, D.B.2
Wolf, E.3
Tonchev, T.4
Milla, M.5
Kim, P.S.6
-
25
-
-
0030987407
-
MultiCoil: A program for predicting two- and three-stranded coiled coils
-
Wolf E., Kim P.S., Berger B. MultiCoil: a program for predicting two- and three-stranded coiled coils. Protein Sci. 6:1997;1179-1189.
-
(1997)
Protein Sci.
, vol.6
, pp. 1179-1189
-
-
Wolf, E.1
Kim, P.S.2
Berger, B.3
-
26
-
-
0029083811
-
Predicting oligomerization states of coiled coils
-
Woolfson D.N., Alber T. Predicting oligomerization states of coiled coils. Protein Sci. 4:1995;1596-1607.
-
(1995)
Protein Sci.
, vol.4
, pp. 1596-1607
-
-
Woolfson, D.N.1
Alber, T.2
-
27
-
-
0035853291
-
Socket: A program for identifying and analysing coiled-coil motifs within protein structures
-
Walshaw J., Woolfson D.N. Socket: a program for identifying and analysing coiled-coil motifs within protein structures. J. Mol. Biol. 307:2001;1427-1450.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 1427-1450
-
-
Walshaw, J.1
Woolfson, D.N.2
-
28
-
-
0030804094
-
Leucine is the most stabilizing aliphatic amino acid in the d position of a dimeric leucine zipper coiled coil
-
Moitra J., Szilak L., Krylov D., Vinson C. Leucine is the most stabilizing aliphatic amino acid in the d position of a dimeric leucine zipper coiled coil. Biochemistry. 36:1997;12567-12573.
-
(1997)
Biochemistry
, vol.36
, pp. 12567-12573
-
-
Moitra, J.1
Szilak, L.2
Krylov, D.3
Vinson, C.4
-
29
-
-
0030029835
-
Formation of parallel and antiparallel coiled-coils controlled by the relative positions of alanine residues in the hydrophobic core
-
Monera O.D., Zhou N.E., Lavigne P., Kay C.M., Hodges R.S. Formation of parallel and antiparallel coiled-coils controlled by the relative positions of alanine residues in the hydrophobic core. J. Biol. Chem. 271:1996;3995-4001.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 3995-4001
-
-
Monera, O.D.1
Zhou, N.E.2
Lavigne, P.3
Kay, C.M.4
Hodges, R.S.5
-
30
-
-
0034616959
-
Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d"
-
Tripet B., Wagschal K., Lavigne P., Mant C.T., Hodges R.S. Effects of side-chain characteristics on stability and oligomerization state of a de novo-designed model coiled-coil: 20 amino acid substitutions in position "d" J. Mol. Biol. 300:2000;377-402.
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 377-402
-
-
Tripet, B.1
Wagschal, K.2
Lavigne, P.3
Mant, C.T.4
Hodges, R.S.5
-
31
-
-
0037117698
-
Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil
-
Campbell K.M., Sholders A.J., Lumb K.J. Contribution of buried lysine residues to the oligomerization specificity and stability of the fos coiled coil. Biochemistry. 41:2002;4866-4871.
-
(2002)
Biochemistry
, vol.41
, pp. 4866-4871
-
-
Campbell, K.M.1
Sholders, A.J.2
Lumb, K.J.3
-
32
-
-
0032459429
-
Targeting Sir proteins to sites of action: A general mechanism for regulated repression
-
Cockell M., Gotta M., Palladino F., Martin S.G., Gasser S.M. Targeting Sir proteins to sites of action: a general mechanism for regulated repression. Cold Spring Harbor Symp. Quant. Biol. 63:1998;401-412.
-
(1998)
Cold Spring Harbor Symp. Quant. Biol.
, vol.63
, pp. 401-412
-
-
Cockell, M.1
Gotta, M.2
Palladino, F.3
Martin, S.G.4
Gasser, S.M.5
-
33
-
-
0025975312
-
Cloning genes by complementation in yeast
-
Rose M.D., Broach J.R. Cloning genes by complementation in yeast. Methods Enzymol. 194:1991;195-230.
-
(1991)
Methods Enzymol.
, vol.194
, pp. 195-230
-
-
Rose, M.D.1
Broach, J.R.2
-
35
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
Harbury P.B., Zhang T., Kim P.S., Alber T. A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science. 262:1993;1401-1407.
-
(1993)
Science
, vol.262
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
36
-
-
0036811115
-
A unique class of conditional sir2 mutants displays distinct silencing defects in Saccharomyces cerevisiae
-
Garcia S.N., Pillus L. A unique class of conditional sir2 mutants displays distinct silencing defects in Saccharomyces cerevisiae. Genetics. 162:2002;721-736.
-
(2002)
Genetics
, vol.162
, pp. 721-736
-
-
Garcia, S.N.1
Pillus, L.2
-
37
-
-
0028941966
-
Action of a RAP1 carboxy-terminal silencing domain reveals an underlying competition between HMR and telomeres in yeast
-
Buck S.W., Shore D. Action of a RAP1 carboxy-terminal silencing domain reveals an underlying competition between HMR and telomeres in yeast. Genes Dev. 9:1995;370-384.
-
(1995)
Genes Dev.
, vol.9
, pp. 370-384
-
-
Buck, S.W.1
Shore, D.2
-
38
-
-
0029922959
-
Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing
-
Triolo T., Sternglanz R. Role of interactions between the origin recognition complex and SIR1 in transcriptional silencing. Nature. 381:1996;251-253.
-
(1996)
Nature
, vol.381
, pp. 251-253
-
-
Triolo, T.1
Sternglanz, R.2
-
39
-
-
0033522444
-
Limitations of silencing at native yeast telomeres
-
Pryde F.E., Louis E.J. Limitations of silencing at native yeast telomeres. EMBO J. 18:1999;2538-2550.
-
(1999)
EMBO J.
, vol.18
, pp. 2538-2550
-
-
Pryde, F.E.1
Louis, E.J.2
-
40
-
-
0032554797
-
Telomere maintenance is dependent on activities required for end repair of double-strand breaks
-
Nugent C.I., Bosco G., Ross L.O., Evans S.K., Salinger A.P., Moore J.K., et al. Telomere maintenance is dependent on activities required for end repair of double-strand breaks. Curr. Biol. 8:1998;657-660.
-
(1998)
Curr. Biol.
, vol.8
, pp. 657-660
-
-
Nugent, C.I.1
Bosco, G.2
Ross, L.O.3
Evans, S.K.4
Salinger, A.P.5
Moore, J.K.6
-
41
-
-
0033612287
-
Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast
-
Martin S.G., Laroche T., Suka N., Grunstein M., Gasser S.M. Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast. Cell. 97:1999;621-633.
-
(1999)
Cell
, vol.97
, pp. 621-633
-
-
Martin, S.G.1
Laroche, T.2
Suka, N.3
Grunstein, M.4
Gasser, S.M.5
-
44
-
-
0002583957
-
'dm': An automated procedure for phase improvement by density modification
-
Cowtan K. 'dm': an automated procedure for phase improvement by density modification. Joint CCP4 ESF-EACBM Newsletter Protein Crystallog. 31:1994;34-38.
-
(1994)
Joint CCP4 ESF-EACBM Newsletter Protein Crystallog.
, vol.31
, pp. 34-38
-
-
Cowtan, K.1
-
45
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones T.A., Zou J.Y., Cowan S.W., Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallog. sect. A. 47:1991;110-119.
-
(1991)
Acta Crystallog. sect. A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
46
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D. 54:1998;905-921.
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
48
-
-
0017806223
-
Boundary analysis of sedimentation velocity experiments with monodisperse and paucidisperse solutes
-
van Holde K.E., Weischet W.O. Boundary analysis of sedimentation velocity experiments with monodisperse and paucidisperse solutes. Biopolymers. 17:1978;1387-1403.
-
(1978)
Biopolymers
, vol.17
, pp. 1387-1403
-
-
Van Holde, K.E.1
Weischet, W.O.2
-
49
-
-
0031020113
-
Identification and interpretation of complexity in sedimentation velocity boundaries
-
Demeler B., Saber H., Hansen J.C. Identification and interpretation of complexity in sedimentation velocity boundaries. Biophys. J. 72:1997;397-407.
-
(1997)
Biophys. J.
, vol.72
, pp. 397-407
-
-
Demeler, B.1
Saber, H.2
Hansen, J.C.3
-
51
-
-
0025978949
-
Getting started with yeast
-
Sherman F. Getting started with yeast. Methods Enzymol. 194:1991;3-21.
-
(1991)
Methods Enzymol.
, vol.194
, pp. 3-21
-
-
Sherman, F.1
-
52
-
-
0030862060
-
Two new S-phase-specific genes from Saccharomyces cerevisiae
-
Le S., Davis C., Konopka J.B., Sternglanz R. Two new S-phase-specific genes from Saccharomyces cerevisiae. Yeast. 13:1997;1029-1042.
-
(1997)
Yeast
, vol.13
, pp. 1029-1042
-
-
Le, S.1
Davis, C.2
Konopka, J.B.3
Sternglanz, R.4
-
53
-
-
0027184524
-
Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage
-
Renauld H., Aparicio O.M., Zierath P.D., Billington B.L., Chhablani S.K., Gottschling D.E. Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage. Genes Dev. 7:1993;1133-1145.
-
(1993)
Genes Dev.
, vol.7
, pp. 1133-1145
-
-
Renauld, H.1
Aparicio, O.M.2
Zierath, P.D.3
Billington, B.L.4
Chhablani, S.K.5
Gottschling, D.E.6
-
54
-
-
0031056907
-
An unusual form of transcriptional silencing in yeast ribosomal DNA
-
Smith J.S., Boeke J.D. An unusual form of transcriptional silencing in yeast ribosomal DNA. Genes Dev. 11:1997;241-254.
-
(1997)
Genes Dev.
, vol.11
, pp. 241-254
-
-
Smith, J.S.1
Boeke, J.D.2
-
55
-
-
0029807521
-
Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcriptional silencing
-
Stone E.M., Pillus L. Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcriptional silencing. J. Cell. Biol. 135:1996;571-583.
-
(1996)
J. Cell. Biol.
, vol.135
, pp. 571-583
-
-
Stone, E.M.1
Pillus, L.2
-
56
-
-
0027532105
-
Pitch diversity in alpha-helical coiled coils
-
Seo J., Cohen C. Pitch diversity in alpha-helical coiled coils. Proteins: Struct. Funct. Genet. 15:1993;223-234.
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.15
, pp. 223-234
-
-
Seo, J.1
Cohen, C.2
-
57
-
-
0031570687
-
Structure of bacteriophage T4 fibritin: A segmented coiled coil and the role of the C-terminal domain
-
Tao Y., Strelkov S.V., Mesyanzhinov V.V., Rossmann M.G. Structure of bacteriophage T4 fibritin: a segmented coiled coil and the role of the C-terminal domain. Structure. 5:1997;789-798.
-
(1997)
Structure
, vol.5
, pp. 789-798
-
-
Tao, Y.1
Strelkov, S.V.2
Mesyanzhinov, V.V.3
Rossmann, M.G.4
|