mtDNA perspective of chromosomal diversification and hybridization in Peters' tent-making bat (Uroderma bilobatum: Phyllostomidae)

Molecular Ecology

Volumn 12, Issue 11, 2003, Pages 2981-2993

  Hoffmann, Federico G ^a,c   Owen, James G ^b   Baker, Robert J ^a  

^a TEXAS TECH UNIVERSITY   (United States)

^b Univ Salvadoreña Alberto   (El Salvador)

^c UNIVERSITY OF NEBRASKA   (United States)

Author keywords

Chromosomal rearrangements; Cytochrome b; Population divergence; Speciation

Indexed keywords

ANIMALS; BASE SEQUENCE; BAYES THEOREM; CENTRAL AMERICA; CHIROPTERA; CHROMOSOMES; DNA PRIMERS; DNA, MITOCHONDRIAL; GEOGRAPHY; HYBRIDIZATION, GENETIC; KARYOTYPING; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SOUTH AMERICA; SPECIES SPECIFICITY; VARIATION (GENETICS);

MAMMALIA; PHYLLOSTOMIDAE; URODERMA; URODERMA BILOBATUM;

EID: 0242456924     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01959.x     Document Type: Article

References (74)

1. Abbot RJ (1992) Plant invasions, interspecific hybridization and the evolution of new plant taxa. Trends in Ecology and Evolution, 7, 401-405.
2. Arbogast BS, Slowinski JB (1998) Pleistocene speciation and the mitochondrial DNA clock. Science, 282, 1955a.
3. Arnold ML (1992) Natural hybridization as an evolutionary process. Annual Review of Ecology and Systematics, 23, 237-261.
4. Arnold ML (1997) Natural Hybridization and Evolution. Oxford University Press, Oxford, UK.
5. Avise JC (2000) Phylogeography: the History and Duration of Species. Harvard University Press, Cambridge, MA.
6. Avise JC, Johns GC (1999) Proposal for a standardized temporal scheme of biological classification for extant species. Proceedings of the National Academy of Sciences USA, 96, 7358-7363.
7. Avise JC, Walker D (1999) Species realities and numbers in sexual vertebrates: perspectives from an asexually transmitted genome. Proceedings of the National Academy of Sciences USA, 96, 992-995.
8. Avise JC, Walker D, Johns GC (1998) Speciation durations and Pleistocene effects on vertebrate phylogeography. Proceedings of the Royal Society of London (Biological Sciences), 265, 1707-1712.
9. Baker RJ (1979) Karyology. In: Biology of the Bats of the New World Family Phyllostomatidae. Part III (eds Baker RJ, Jones JK, Carter DC). Special Publications, Texas Tech University Museum, 16, 107-155.
10. Baker RJ (1981) Chromosome flow between chromosomally characterized taxa of a volant mammal, Uroderma bilobatum (Chiroptera: Phyllostomidae). Evolution, 35, 296-305.
11. Baker RJ, Atchley WR, McDaniel VR (1972) Karyology and morphometrics of Peters tent-making bat Uroderma bilobatum (Chiroptera: Phyllostomidae). Systematic Zoology, 21, 414-429.
12. Baker RJ, Bass RA, Johnson MA (1979) Evolutionary implications of chromosomal homology in four genera of stenodermatine bats (Phyllostomydae: Chiroptera). Evolution, 33, 220-226.
13. Baker RJ, Bickham, JW (1986) Speciation by monobrachial centric fusions. Proceedings of the National Academy of Sciences USA, 83, 8245-8248.
14. Baker RJ, Bleier WJ, Atchley WR (1975) A contact zone between characterized taxa of Uroderma bilobatum (Chiroptera: Phyllostomidae). Systematic Zoology, 24, 133-142.
15. Baker RJ, Porter CA, Patton JC, Van Den Bussche RA (2000) Systematics of bats of the family Phyllostomidae based on RAG2 DNA sequences. Occasional Papers, Texas Tech University Museum, 202, 1-16.
16. Barton NH (1982) The structure of the hybrid zone in Uroderma bilobatum (Chiroptera: Phyllostomidae). Evolution, 36, 863-866.
17. Barton NH, Hewitt GM (1985) Analysis of hybrid zones. Annual Review of Ecology and Systematics, 6, 113-148.
18. Barton NH, Hewitt GM (1989) Adaptation, speciation and hybrid zones. Nature, 341, 497-503.
19. Bradley RD, Baker RJ (2001) A test of the genetic species concept: cytochrome-b sequences and mammals. Journal of Mammalogy, 82, 960-973.
20. Bradley RD, Bryant FC, Bradley LC, Hayne ML, Baker RJ (2003) Implications of hybridization between white tailed deer and mule deer. Southwestern Naturalist, in press.
21. Britton-Davidian J (2001) How do chromosomal changes fit in? Journal of Evolutionary Biology, 14, 872-873.
22. Britton-Davidian J, Catalan J, Ramalhinho MJ et al. (2000) Rapid chromosomal evolution in island mice. Nature, 403, 158.
23. Carr SM, Ballinger SW, Derr JN, Blankenship LH, Bickham JW (1986) Mitochondrial DNA analysis of hybridization between sympatric white-tailed deer and mule deer in west Texas. Proceedings of the National Academy of Sciences USA, 83, 9576-9580.
24. Cathey JC, Bickham JW, Patton JC (1998) Introgressive hybridization and nonconcordant evolutionary history of maternal and paternal lineages in North American deer. Evolution, 52, 1224-1229.
25. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1660.
26. Costa LP (2002) The historical bridge between the Amazon and the Atlantic Forest of Brazil: a study of molecular phylogeography with small mammals. Journal of Biogeography, 30, 71-86.
27. Coyne JA, Orr HA (1998) The evolutionary genetics of speciation. Philosophical Transactions of the Royal Society of London (Biological Sciences), 353, 287-305.
28. Davis WD (1968) Review of the genus Uroderma (Chiroptera). Journal of Mammalogy, 49, 676-698.
29. Ditchfield AD (2000) The comparative phylogeography of Neotropical mammals: patterns of intraspecific mitochondrial DNA variation among bats contrasted to nonvolant small mammals. Molecular Ecology, 9, 1307-1318.
30. Endler JA (1977) Geographic variation, speciation, and clines. Monographs on Population Biology, 10, 1-246.
31. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
32. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791.
33. Fleming TH, Hooper ET, Wilson DE (1972) Three Central American bat communities: structure, reproductive cycles, and movement patterns. Ecology, 53, 555-569.
34. Fu XF (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
35. Fu XF, Li WH (1993) Maximum likelihood estimation of population parameters. Genetics, 134, 1261-1270.
36. Greenbaum IF (1981) Genetic interactions between hybridizing cytotypes of the tent-making bat (Uroderma bilobatum). Evolution, 35, 305-320.
37. Hafner JC (1982) Genetic interactions at a contact zone of Uroderma bilobatum (Chiroptera: Phyllostomidae). Evolution, 36, 852-862.
38. Hewitt GM (1988) Hybrid zones - natural laboratory for evolutionary studies. Trends in Ecology and Evolution, 3, 158-167.
39. Hoffmann FG, Baker RJ (2001) Systematics of the bats of the genus Glossophaga (Chiroptera: Phyllostomidae) based on cytochrome-b. Journal of Mammalogy, 82, 1092-1101.
40. Hoffmann FG, Baker RJ (2003) Comparative phylogeography of short-tailed bats (Carollia: Phyllostomidae). Molecular Ecology, in press.
41. Hudson RR, Slatkin M, Maddison WP (1992) Estimation of levels of gene flow from DNA sequence data. Genetics, 132, 583-589.
42. Huelsenbeck JP, Ronquist F (2001) MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics, 17, 754-755.
43. Johns GC, Avise JC (1998) A comparative summary of genetic distances in the vertebrates from the mitochondrial cytochrome-b gene. Molecular Biology and Evolution, 15, 1481-1490.
44. Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution, 29, 170-179.
45. Lessa EP (1990) Multidimensional analysis of geographic genetic structure. Systematic Biology, 39, 242-252.
46. Longmire JL, Maltbie M, Baker RJ (1997) Use of 'lysis buffer' in DNA isolation and its implication for museum collections. Occasional Papers, Texas Tech University Museum, 163, 1-3.
47. Maniatis T, Fritsch EF, Sambrock J (1992) Molecular Cloning. A Laboratory Manual. Cold Spring Harbor Laboratory Press, New York.
48. Matocq MD (2002) Phylogeographical structure and regional history of the dusky-footed woodrat, Neotoma fuscipes. Molecular Ecology, 11, 229-242.
49. May RM, Endler JA, McMurtrie RE (1975) Gene frequency clines in the presence of selection opposed by gene flow. American Naturalist, 109, 659-676.
50. McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature, 351, 652-654.
51. Miller SA, Dikes DD, Polesky HF (1988) A simple 'salting out' procedure for extracting DNA for human nucleated cells. Nucleic Acids Research, 16, 215.
52. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
53. Noor MFA, Grams KL, Bertucci LA, Reiland J (2001) Chromosomal inversions and the reproductive isolation of species. Proceedings of the National Academy of Sciences USA, 98, 12084-12088; published online before print as 0.1073/pnas.221274498.
54. Owen JG, Baker RJ (2001) The Uroderma bilobatum (Chiroptera: Phyllostomidae) cline revisited. Journal of Mammalogy, 82, 1102-1113.
55. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
56. Posada D, Crandall KA (2001) Intraspecific phylogenetics: trees grafting into networks. Trends in Ecology and Evolution, 16, 37-45.
57. Rieseberg LH (2001) Chromosomal rearrangements and speciation. Trends in Ecology and Evolution, 16, 351-358.
58. Rogers AR, Fraley AE, Bamshad MJ, Scott Watkins W, Jorde LB (1996) Mitochondrial mismatch analysis is insensitive to the mutational process. Molecular Biology and Evolution, 13, 895-902.
59. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9, 552-569.
60. Rozas J, Rozas R (1999) DNASP, version 3: an integrated program for molecular population and molecular evolution analysis. Bioinformatics, 15, 174-175.
61. Saiki RK, Gelfand DH, Stoffel S et al. (1988) Primer-directed enzymatic amplifications of DNA with thermostable DNA polymerase. Science, 239, 487-491.
62. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
63. Schneider S, Roesli D, Excoffier L (2001) ARLEQUIN, version 2001. A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory. University of Geneva, Switzerland.
64. Shimodaira H, Hasegawa H (1999) Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution, 16, 1114-1116.
65. Slatkin M, Hudson RR (1991) Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics, 129, 555-562.
66. Smith MF, Kelt DA, Patton JL (2001) Testing models of diversification in mice in the Abrothrix olivaceus/xanthorhinus complex in Chile and Argentina. Molecular Ecology, 10, 397-405.
67. Smith MF, Patton JL (1999) Phylogenetic relationships and the radiation of sigmodontine rodents in South America: evidence from cytochrome b. Journal of Mammalian Evolution, 6, 89-128.
68. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0b10. Sinauer Associates, Inc, Sunderland, MA.
69. Takahashi K, Nei M (2000) Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used. Molecular Biology and Evolution, 8, 1251-1258.
70. Templeton AR (1981) Mechanisms of speciation - a population genetics approach. Annual Review of Ecology and Systematics, 12, 23-48.
71. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
72. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659-669.
73. White MJD (1978) Modes of Speciation. W.H. Freeman, San Francisco.
74. Wilson DE (1979) Reproductive patterns. In: Biology of Bats of the New World Family Phyllostomatidae. Part 3 (eds Baker RJ, Jones JK, Carter DC), pp. 57-119. Special Publications of the Museum of Texas Tech University, 16, 1-441.