A large-insert (130 kbp) bacterial artificial chromosome library of the rice blast fungus Magnaporthe grisea: Genome analysis, contig assembly, and gene cloning

Fungal Genetics and Biology

Volumn 21, Issue 3, 1997, Pages 337-347

  Zhu, Heng ^a   Choi, Sangdun ^a   Johnston, Andrea K ^a   Wing, Rod A ^a   Dean, Ralph A ^a  

^a CLEMSON UNIVERSITY   (United States)

Author keywords

Bacterial artificial chromosome (BAC); Chromosome walk; Contig; Genome analysis; Magnaporthe grisea; Physical mapping

Indexed keywords

ADENYLATE CYCLASE; CONTIG; DNA FRAGMENT; FUNGAL DNA;

AGRICULTURE; ARTICLE; CHROMOSOME 2; CHROMOSOME MAP; DNA LIBRARY; DNA PROBE; FUNGAL GENETICS; FUNGUS; GENE INSERTION; GENE MAPPING; GENOME; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; RETROPOSON; SOUTHERN BLOTTING;

BACTERIA (MICROORGANISMS); FUNGI; MAGNAPORTHE GRISEA; ORYZA SATIVA;

EID: 0031170738     PISSN: 10871845     EISSN: None     Source Type: Journal    
DOI: 10.1006/fgbi.1997.0996     Document Type: Article

References (45)

1. F. Arredondo, A. Chan, B. M. Tyler, 1997, Construction of a BAC contig ofPhytophthora sojae, 19th Fungal Genetics Conference, 34, Pacific Grove, CA.
2. Bayley C. C., Morgan M., Dale E. C., Ow D. W. Exchange of gene activity in transgenic plants catalyzed by the Cre-lox. Plant Mol. Biol. 18:1992;353-362.
3. Cai L., Taylor J. F., Wing R. A., Gallagher D. S., Woo S. S., Davis S. K. Construction and characterization of a bovine bacterial artificial chromosome library. Genomics. 29:1995;413-425.
4. Chao C. T., Ellingboe A. H. Selection for mating competence inMagnaporthe grisea. Can. J. Bot. 69:1991;2130-2134.
5. Choi S-D., Creelman R., Mullet J., Wing R. A. Construction and characterization of a bacterial artificial chromosome library fromArabidopsis thaliana. Plant Mol. Biol. 13:1995;124-128.
6. Diaz-Perez S. V., Crouch V. W., Orbach M. J. Construction and characterization of a Bacterial Artificial Chromosome library. Fungal Genet. Biol. 20:1996;280-288.
7. Farman M. L., Tosa Y., Leong S. A. MAGGY, a retrotransposon in the genome of the rice blast fungusMagnaporthe grisea. Mol. Gen. Genet. 251:1996;665-674.
8. Fukushige S., Sauer B. Genomic targeting with a positive-selectionlox. Proc. Natl. Acad. Sci. USA. 89:1992;7905-7909.
9. Hanahan D. Studies on transformation ofEscherichia coli. J. Mol. Biol. 166:1983;557-580.
10. Ioannou P. A., Amemiya C. T., Garnes J., Kroisel P. M., Shizuya H., Chen C., Batzer M. A., de Jong P. J. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet. 5:1994;84-89.
11. Jiang J., Gill B., Wang G., Ronald P., Ward D. Metaphase and interphase fluorescencein situ. Proc. Natl. Acad. Sci. USA. 99:1995;4487-4491.
12. Kang S., Sweigard J. A., Valent B. ThePWLMagnaporthe grisea. Mol. Plant-Microbe Interact. 8:1995;939-948.
13. Kim U-J., Birren B., Mancino V., Slepak T., Boysen C., Kang H-L., Simon M. I., Shizuya H. Construction and characterization of human Bacterial Artificial Chromosome library. Genomics. 34:1996;213-218.
14. Kolmer J. A., Ellingboe A. H. Genetic relationship between fertility and pathogenicity and virulence in rice blast fungusMagnaporthe grisea. Can. J. Bot. 66:1988;981-987.
15. Lee Y-H., Dean R. A. Stage-specific gene expression during appressorium formation ofMagnaporthe grisea. Exp. Mycol. 17:1993;215-222.
16. Leung H., Borromeo E. S., Bernardo M., Notteghem J. L. Genetic analysis of virulence in rice blast fungusMagnaporthe grisea. Phytopathology. 78:1988;1227-1233.
17. Nitta N., Farman M. L., Leong S. A. Genome organization ofMagnaporthe grisea: Theor. Appl. Genet. 1997.
18. Mann B. J., Akins R. A., Lambowitz A. M., Metzenberg R. L. The structural gene for a phosphorus-repressible phosphate permease inNeurospora crassanuc. Mol. Cell Biol. 8:1988;1376-1379.
19. Miller B. L., Miller K. Y., Roberti K. A., Timberlake W. E. Position-dependent and -independent mechanisms regulate cell-specific expression of the SpoC1 gene cluster inAspergillus nidulans. Mol. Cell Biol. 7:1987;427-434.
20. Mitchell T. K., Dean R. A. The cAMP-dependent protein kinase catalytic subunit is required for appressorium formation and pathogenicity by the rice blast pathogenMagnaporthe grisea. Plant Cell. 7:1995;1869-1878.
21. Ou S. H. Rice Disease. 1985;Commonwealth Mycological Inst. Kew.
22. Orbach M. J., Chumley F. G., Valent B. Electrophoretic karyotypes ofMagnaporthe grisea. Mol. Plant-Microbe Interact. 9:1996;261-271.
23. Qin M., Bayley C., Stockton T., Ow D. W. Cre recombinase-mediated site-specific recombination between plant chromosomes. Proc. Natl. Acad. Sci. USA. 91:1994;1706-1710.
24. Romao J., Hamer J. E. Genetic organization of a repeated DNA sequence family in the rice blast fungus. Proc. Natl. Acad. Sci. USA. 89:1992;5316-5320.
25. Rossman A. Y., Howard R. J., Valent B. Pyricularia oryzea, Mycologia. 82:1990;509-512.
26. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
27. Sauer B. Manipulation of transgenes by site-specific recombination: Use of Cre recombinase. Methods Enzymol. 225:1993;890-900.
28. Sauer B., Henderson N. Targeted insertion of exogenous DNA into the eukaryotic genome by the Cre recombinase. New Biol. 2:1990;441-449.
29. Shizuya H., Birren B., Kim U-J., Mancino V., Slepak T., Tachiiri Y., Simon M. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA inEscherichia coli. Proc. Natl. Acad. Sci. USA. 89:1992;8794-8797.
30. Skinner D. J., Budde A. D., Farman M. L., Smith J. R., Leung H., Leong S. A. Genome organization ofMagnaporthe grisea: Theor. Appl. Genet. 87:1993;545-557.
31. Sweigard J. A., Valent B., Orbach M. J., Walter A. M., Rafalski A., Chumley F. G. Genetic map of the rice blast fungusMagnaporthe grisea. Genetic Maps. 1993;Cold Spring Harbor Laboratory Press, Cold Spring Harbor. p. 3.112-3.117.
32. Sweigard J. A., Chumley F. G., Valent B. Cloning and analysis ofCUT1,Magnaporthe grisea. Mol. Gen. Genet. 232:1992;174-182.
33. Talbot N. J., Ebbole D. J., Hamer J. E. Identification and characterization ofMPG1,Magnaporthe grisea. Plant Cell. 5:1993;1575-1590.
34. Valent B., Chumley F. G. Molecular genetic analysis of the rice blast fungus,Magnaporthe grisea. Annu. Rev. Phytopathol. 29:1991;443-467.
35. Valent B., Crawford M. S., Weaver C. G., Chumley F. G. Genetic studies of fertility and pathogenicity inMagnaporthe griseaPyricularia oryzea. Iowa State J. Res. 60:1986;569-594.
36. Venter J. C., Smith H. O., Hood L. A new strategy for genome sequencing. Nature. 381:1996;364-366.
37. Wang G. L., Holtsten T. E., Song W. Y., Wang H. P., Ronald P. C. Construction of a rice bacterial artificial chromosome library and identification of clones linked to theXa-21. Plant J. 7:1995;525-533.
38. Wang G-W., Warren R., Innes R., Osborne B., Baker B., Ronald P. C. Construction of anArabidopsis. Plant Mol. Biol. Rep. 1995;107-113.
39. Wang Y., Prade R. A., Griffith J., Timberlake W. E., Arnold J. A fast random cost algorithm for physical mapping. Proc. Natl. Acad. Sci. USA. 91:1994;11094-11098.
40. Woo S-S., Gill B. S., Paterson A. H., Wing R. A. Construction and characterization of a bacterial artificial chromosome library ofSorghum bicolor. Nucleic Acids Res. 22:1994;4922-4931.
41. Xiong M., Chen H. J., Prade R. A., Wang Y., Griffith J., Timberlake W. E., Arnold J. On the consistency of a physical mapping method to reconstruct a chromosomein Vitro. Genetics. 142:1996;267-284.
42. Xu J-R., Hamer J. E. MAP kinase and cAMP signaling regulate infection structure formation and pathogenic growth in the rice blast fungusMagnaporthe grisea. Genes Dev. 10:1996;2696-2706.
43. Zhang H., Choi S.-D., Woo S.-S., Li Z., Wing R. A. Construction and characterization of two rice bacterial artificial chromosome libraries from parents of a permanent recombinant inbred mapping population. Mol. Breeding. 2:1996a;11-24.
44. Zhang H., Woo S-S., Wing R. A. BAC, YAC, and cosmid library construction. Foster G. D., Twell T. Plant Gene Isolation: Principles and Practice. 1996b;75-99 Wiley, New York.
45. Zhu H., Whitehead D. S., Lee Y-H., Dean R. A. Genetic analysis of developmental mutants and rapid chromosome mapping ofAPP1,Magnaporthe grisea. Mol. Plant-Microbe Interact. 9:1996;767-774.