Analysis of Sweet Cherry (Prunus avium L.) Cultivars Using SSR and AFLP Markers

Journal of the American Society for Horticultural Science

Volumn 128, Issue 6, 2003, Pages 904-909

  Struss, Darush ^a   Ahmad, Riaz ^a   Southwick, Stephen M ^a   Boritzki, Manuela ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

Author keywords

Cultivar identification; Microsatellites; Molecular markers; Prunus

Indexed keywords

ARMENIACA; EMBRYOPHYTA; PRUNUS; PRUNUS ARMENIACA; PRUNUS AVIUM; PRUNUS DOMESTICA; PRUNUS PERSICA; PRUNUS SALICINA;

EID: 0242340362     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.128.6.0904     Document Type: Article

References (38)

1. Aranzana, M. J., M.C. de Vicente, and P. Arus. 2001. Comparison of fruit and leaf DNA extracts for AFLP and SSR analysis in peach (prunus persica (L.) Batsch. Acta. Hort. 546:297-300.
2. Brooks, R. and H. Olmo. 1997. The Brooks and Olmo register of fruit and nut varieties. 3rd ed. ASHS Press, Alex., Va.
3. Boritzki, M., J. Plieske, and D. Struss. 2000. Cultivar identification in sweet cherry (Prunus avium L.) using AFLP and micro-satellite markers. Acta Hort. P538: 505-510.
4. Cantini, C., A.F. Iezzoni, W. F. Lamboy, M. Boritzki, and D. Struss. 2001. DNA Fingerprinting of tetraploid cherry germplasm using simple sequence repeats. J. Amer. Soc. Hort. Sci. 126:205-209.
5. Conditt, R. and S.P. Hubble. 1991. Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome 34:66-71.
6. Cipriani, G., G. Lot., W.G. Huang, M.T. Marrazzo, E. Peterlunger, and R. Testolin. 1999. AC/GT and AG/CT microsatellite repeats in peach (Prunus persica): Isolation, characterization and cross-species amplification in Prunus. Theor. Appl. Genet. 99:65-72.
7. Dirlewanger, E. and C. Bodo. 1994. Molecular genetic mapping of peach Euphytica 77:101-103.
8. Dirlewanger E., V. Pronier, C. Parvery,. C. Rothan, A. Guye, and R. Monet. 1998. Genetic linkage map of peach (Prunus persica L. Batsch) using morphological and molecular markers. Theor. Appl. Genet. 97:888-895.
9. Dirlewanger E., P. Cosson, M. Tavaud, M.J. Aranzana, C. Poizat, A. Zanetto, P. Arus, and F. Laigret. 2002. Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry. Theor. Appl. Genet. 105:127-138.
10. Downey, S.L. and A.F. Iezzoni. 2000. Polymorphic DNA markers in black cherry (Prunus serotina) are identified using sequences from sweet cherry, peach and sour cherry. J. Amer. Soc. Hort. Sci. 125:76-80.
11. Echt, C.S. and P. May-Marquardt. 1997. Survey of microsatellite DNA in pine. Genome 40:9-17.
12. Feinberg, A.P. and B. Vogelstein. 1983. A technique for radiolabelling DNA restriction fragments to high specific activity. Anal. Biochem. 132:6-13.
13. Gerlach, H.K. and R. Stosser. 1998. Sweet cherry cultivar identification using RAPD-derived DNA fingerprints. Acta Hort. 468:63-69.
14. Guilford, P., S. Prakash, J. M. Zhu, F., Rikkerink, S. Gardiner, H. Bassett, and R. Forster. 1997. Microsatellites in Malus x domestica (apple): abundance, polymorphism and cultivar identification. Theor. Appl. Genet. 94:249-254.
15. Joobeur T., M.A. Viruel, M.C. de Vicente, B. Jauregui, J. Ballester, M.T. Dettori, I. Verde, M.J. Truco, R. Messeguer, I. Batelle, R. Quarta, E. Dirlwanger, and P. Arus. 1998. Constuction of a saturated linkage map for Prunus using an almond X peach F2 progeny. Theor. Appl. Genet. 97:1034-1041.
16. Li, C.D., B.C. Rossnagel, and G.J. Scoles. 2000. The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars. Theor. Appl. Genet. 101:1259-1268.
17. McCouch, R.S., X. Chen, O. Panaud, S. Temnykh, Y. Xu, Y. G. Cho, N. Huang, T. Ishii, and M. Blair. 1997. Microsatellite marker development, mapping and applications in rice genetics and breeding. Plant Mol. Biol 35:89-99.
18. Mohanty, A., J.P. Martin, and I. Aguinagalde. 2001. Chloroplast DNA study in wild populations and some cultivars of Prunus avium L. Theor. Appl. Genet. 103:112-117.
19. Myburg, A.A., D.L. Remington, D.M. O'Malley, R.R. Sederoff, and R.W. Whetten. 2001. High-throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer. Biotechniques 30:348-357.
20. Peakall, R., S. Gilmore, W. Keys, M. Morgante, and A. Rafalski. 1998. Cross-species amplification of soybean (Glycine max) simple-sequeuce-repeats (SSRs) within the genus and other legume genera. Mol. Bio. Evol. 15:1275-1287.
21. Plaschke, J., M.W. Ganel, and M.S. Roder. 1995. Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor. Appl. Genet. 91:1001-1007.
22. Provan, J., W. Powell, and R. Waugh. 1996. Microsatellite analysis of relationships within cultivated potato (Solanum tubersum). Theor. Appl. Genet. 92: 1078-1084.
23. Raffaele, T., T. Marrazzo, G. Cipriani, R. Quarta, I. Verde, M. T. Dettori, M. Pancalli, and S. Sansavini. 2000. Microsatellite DNA in peach [Prunus persica (L.) Batsch] and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43:512-520.
24. Saghai Maroof, M.A., R.M. Biyashev, G.P. Yang, Q. Zang, and R.W. Allard. 1994. Extraordinarily polymorphic microsatellite DNA in barley: Species diversity, chromosomal locations, and population dynamics. Proc. Natl. Acad. Sci., USA 91:5466-5670.
25. Shimada, T., H. Hayama, T. Haji, M. Yamaguchi, and M. Yoshida. 1999. Genetic diversity of plums characterized by random amplified polymorphic DNA(RAPD) analysis. Euphytica 109:143-147.
26. Sosinski, B., M. Gannavarapu, L.D. Hager, L.E. Beck, G.J. King, C.D. Ryder, S. Rajapakse, W.V. Baird, R.E. Ballard, and A.G. Abbott. 2000. Characterization of microsatellite markers in peach |Prunus persica (L.) Batsch|. Theor. Appl. Genet. 101:421-428.
27. Sosinski, B., Z.X. Lu, A. Tabb, K. Sossey-Alaoui, S. Rajapakse, K. Glassmoyer, R. Seorza, G. Reighard, R.E. Ballard, W.V. Baird, and A.G. Abbott. 1998. Use of AFLP and RFLP markers to create a combined linkage map in peach [Prunus persica (L.) Batsch] for use in marker assisted selection. Acta Hort. 465:61-68.
28. Struss, D. and J. Plieske. 1998. The use of microsatellite markers for detection of genetic diversity in barley populations. Theor. Appl. Genet. 97:308-315.
29. Struss, D., M. Boritzki, K. Glozer, and S.M. Southwick. 2001. Detection of genetic diversity among populations of sweet cherry (Prunus avium L.) by AFLPs. J. Hort. Sci Biotechnol. 76:362-367.
30. Swofford, D.L. 1999. PAUP: Phylogenetic analysis using parsimony beta test version 4.0 b2. Sinauer Assoc., Sunderland, Mass.
31. Szewe-McFadden, A.K., S. Kresovich, S.M. Bliek, S.E. Mitchell, and E.R. McFerson. 1996. Identification of polymorphic, conserved simple sequence repeats (SSRs) in cultivated Brassica species. Theor. Appl. Genet. 43:534-538.
32. Tobutt, K.R. and R. Boskovic. 1996. A cherry gene database. Acta Hort. 410: 147-153.
33. Tavaud, M., A. Zanetto, F. Santi, and B. Dirlewanger. 2001. Structuration of genetic diversity in cultivated and wild cherry varieties using molecular markers. Acta Hort. 546:263-269.
34. Valdes, A.M., M. Slatkin, and N.B. Freimer. 1993. Allele frequencies of microsatellite loci: The stepwise mutation model revised. Genetics 133:737-749.
35. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucl. Acids Res. 23:4407-4414.
36. Wang, Z., J.L. Weber, G. Zhong, and S.D. Tanksley. 1994. Survey of plant short tandem DNA repeats. Theor. Appl. Genet. 88:1-6.
37. Warburton, M.L. and F.A. Bliss. 1996. Genetic diversity in peach (Prunus persica L. batch) revealed by randomly amplified polymorphic DNA (RAPD) markers and compared to inbreeding co-efficient. J. Amer. Soc. Hort. Sci. 121:1012-1019
38. Zhou, L., F. Kappel, C. Hampson, P.A. Wiersma, and G. Bakkeren. 2002. Genetic analysis and discrimination of sweet cherry cultivars and selections using amplified fragment length polymorphism fingerprints. J. Amer. Soc. Hort. Sci. 127:786-792.