메뉴 건너뛰기




Volumn 490, Issue 1-2, 2003, Pages 365-378

Validation of consensus between proteomic and clinical chemistry datasets by applying a new randomisation F-test for generalised procrustes analysis

Author keywords

Consensus; F test; Generalised procrustes analysis; Predictive toxicology; Protein expression; Proteomics; Randomisation test; SELDI ToF; Significant factors; Validation

Indexed keywords

DESORPTION; IONIZATION; MASS SPECTROMETRY; TOXICITY;

EID: 0142039078     PISSN: 00032670     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2670(03)00336-2     Document Type: Conference Paper
Times cited : (4)

References (42)
  • 3
    • 0032504193 scopus 로고    scopus 로고
    • Identification of the hepatic protein targets of reactive metabolites of acetaminophen in vivo in mice using two-dimensional gel electrophoresis and mas spectrometry
    • Qiu Y., Benet L.Z., Burlingame A.L. Identification of the hepatic protein targets of reactive metabolites of acetaminophen in vivo in mice using two-dimensional gel electrophoresis and mas spectrometry. J. Biol. Chem. 273(28):1998;17940-17953.
    • (1998) J. Biol. Chem. , vol.273 , Issue.28 , pp. 17940-17953
    • Qiu, Y.1    Benet, L.Z.2    Burlingame, A.L.3
  • 4
    • 0034825987 scopus 로고    scopus 로고
    • The use of genomics technology to investigate gene expression changes in cultured human liver cells
    • Harries H.M., Fletcher S.T., Duggan C.M., Baker V.A. The use of genomics technology to investigate gene expression changes in cultured human liver cells. Toxicol. In Vitro. 15:2001;399-405.
    • (2001) Toxicol. In Vitro , vol.15 , pp. 399-405
    • Harries, H.M.1    Fletcher, S.T.2    Duggan, C.M.3    Baker, V.A.4
  • 7
    • 0035977845 scopus 로고    scopus 로고
    • Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity
    • Waring J.F., Ciurlionis R., Jolly R.A., Heindel M., Ulrich R.G. Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity. Toxicol. Lett. 120:2001;359-368.
    • (2001) Toxicol. Lett. , vol.120 , pp. 359-368
    • Waring, J.F.1    Ciurlionis, R.2    Jolly, R.A.3    Heindel, M.4    Ulrich, R.G.5
  • 8
    • 0031807743 scopus 로고    scopus 로고
    • Development of mini-gel technology in two-dimensional electrophoresis for mass-screening of samples: Application to tears
    • Glasson M.J., Molloy M.P., Walsh B.J., Willcox M.D.P., Morris C.A., Williams K.L. Development of mini-gel technology in two-dimensional electrophoresis for mass-screening of samples: application to tears. Electrophoresis. 19:1998;852-855.
    • (1998) Electrophoresis , vol.19 , pp. 852-855
    • Glasson, M.J.1    Molloy, M.P.2    Walsh, B.J.3    Willcox, M.D.P.4    Morris, C.A.5    Williams, K.L.6
  • 13
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi J.L., Iyer V.R., Brown P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278:1997;680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 14
    • 0032762991 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
    • ter Linde J.J.M., Liang H., Davis R.W., Steensma H.Y., van Dijken J.P., Pronk J.T. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J. Bacteriol. 181:1999;7409-7413.
    • (1999) J. Bacteriol. , vol.181 , pp. 7409-7413
    • Ter Linde, J.J.M.1    Liang, H.2    Davis, R.W.3    Steensma, H.Y.4    Van Dijken, J.P.5    Pronk, J.T.6
  • 15
    • 0033000676 scopus 로고    scopus 로고
    • Differences in brain gene expression between sleep and waking as revealed by mRNA differential display and cDNA microarray technology
    • Cirelli C., Tononi G. Differences in brain gene expression between sleep and waking as revealed by mRNA differential display and cDNA microarray technology. J. Sleep Res. 8:1999;44-52.
    • (1999) J. Sleep Res. , vol.8 , pp. 44-52
    • Cirelli, C.1    Tononi, G.2
  • 17
    • 0033637841 scopus 로고    scopus 로고
    • Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex
    • Mirnics K., Middleton F.A., Marquez A., Lewis D.A., Levitt P. Molecular characterization of schizophrenia viewed by microarray analysis of gene expression in prefrontal cortex. Neuron. 28:2000;53-67.
    • (2000) Neuron , vol.28 , pp. 53-67
    • Mirnics, K.1    Middleton, F.A.2    Marquez, A.3    Lewis, D.A.4    Levitt, P.5
  • 20
    • 18344396961 scopus 로고    scopus 로고
    • An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers
    • Ball G., Mian S., Holding F., Allibone R.O., Lowe J., Ali S., Li G., McCardle S., Ellis I.O., Creaser C., Rees R.C. An integrated approach utilizing artificial neural networks and SELDI mass spectrometry for the classification of human tumours and rapid identification of potential biomarkers. Bioinformatics. 18:2002;395-404.
    • (2002) Bioinformatics , vol.18 , pp. 395-404
    • Ball, G.1    Mian, S.2    Holding, F.3    Allibone, R.O.4    Lowe, J.5    Ali, S.6    Li, G.7    McCardle, S.8    Ellis, I.O.9    Creaser, C.10    Rees, R.C.11
  • 21
    • 85030967123 scopus 로고    scopus 로고
    • Ciphergen Biosystems Inc., ProteinChip® System Publications List
    • Ciphergen Biosystems Inc., ProteinChip® System Publications List, http://www.ciphergen.com/F2_news4.html, 2002.
    • (2002)
  • 22
    • 0036259673 scopus 로고    scopus 로고
    • Randomisation test for the number of dimensions of the group average space in generalised procrustes analysis
    • Wu W., Guo Q., de Jong S., Massart D.L. Randomisation test for the number of dimensions of the group average space in generalised procrustes analysis. Food Qual. Pref. 13:2002;191-200.
    • (2002) Food Qual. Pref. , vol.13 , pp. 191-200
    • Wu, W.1    Guo, Q.2    De Jong, S.3    Massart, D.L.4
  • 23
    • 85030972460 scopus 로고    scopus 로고
    • G.M. Arnold, A.A. Williams, The use of generalised procrustes techniques in sensory analysis, in: J.R. Piggott (Ed.), Statistical Procedures in Food Research, Elsevier, London, 1986, pp. 233-253
    • G.M. Arnold, A.A. Williams, The use of generalised procrustes techniques in sensory analysis, in: J.R. Piggott (Ed.), Statistical Procedures in Food Research, Elsevier, London, 1986, pp. 233-253.
  • 24
    • 0001886818 scopus 로고
    • Generalised procrustes analysis
    • Gower J.C. Generalised procrustes analysis. Psychometrika. 40:1975;33-51.
    • (1975) Psychometrika , vol.40 , pp. 33-51
    • Gower, J.C.1
  • 25
    • 0031969799 scopus 로고    scopus 로고
    • Generalised procrustes analysis of coffee brands tested by five European sensory panels
    • de Jong S., Heidema J., van der Knaap H.C.M. Generalised procrustes analysis of coffee brands tested by five European sensory panels. Food Qual. Pref. 9:1998;111-114.
    • (1998) Food Qual. Pref. , vol.9 , pp. 111-114
    • De Jong, S.1    Heidema, J.2    Van Der Knaap, H.C.M.3
  • 26
    • 0031718002 scopus 로고    scopus 로고
    • Evaluation of an international ring trial for sensory profiling of hard cheese
    • Hunter E.A., MacEwan J.A. Evaluation of an international ring trial for sensory profiling of hard cheese. Food Qual. Pref. 9:1998;343-354.
    • (1998) Food Qual. Pref. , vol.9 , pp. 343-354
    • Hunter, E.A.1    MacEwan, J.A.2
  • 27
    • 0002183570 scopus 로고    scopus 로고
    • Raw hop aroma qualities by trained panel free-choice profiling
    • Stucky G.J., McDaniel M.R. Raw hop aroma qualities by trained panel free-choice profiling. Am. Soc. Brew. Chem. 55:1997;65-72.
    • (1997) Am. Soc. Brew. Chem. , vol.55 , pp. 65-72
    • Stucky, G.J.1    McDaniel, M.R.2
  • 28
    • 58149321922 scopus 로고
    • The role of permutation tests in exploratory multivariate data analysis
    • Dijksterhuis G., Heiser W.J. The role of permutation tests in exploratory multivariate data analysis. Food Qual. Pref. 6:1995;263-270.
    • (1995) Food Qual. Pref. , vol.6 , pp. 263-270
    • Dijksterhuis, G.1    Heiser, W.J.2
  • 29
    • 84977708474 scopus 로고
    • A statistical test of consensus obtained from generalised procrustes analysis of sensory data
    • King B.M., Arents P. A statistical test of consensus obtained from generalised procrustes analysis of sensory data. J. Sens. Stud. 6:1991;37-48.
    • (1991) J. Sens. Stud. , vol.6 , pp. 37-48
    • King, B.M.1    Arents, P.2
  • 30
    • 0009210815 scopus 로고
    • Problem with procrustes analysis
    • Huitson A. Problem with procrustes analysis. J. Appl. Stat. 16:1989;39-45.
    • (1989) J. Appl. Stat. , vol.16 , pp. 39-45
    • Huitson, A.1
  • 31
    • 0009288059 scopus 로고
    • Comments on problem with procrustes analysis
    • G.M. Arnold (Ed.), Letters to the editor
    • A. Huitson, Comments on problem with procrustes analysis, in: G.M. Arnold (Ed.), Letters to the editor, J. Appl. Stat. 17 (1990) 451-452.
    • (1990) J. Appl. Stat. , vol.17 , pp. 451-452
    • Huitson, A.1
  • 32
    • 0009274779 scopus 로고
    • Problem with procrustes analysis
    • Letters to the editor
    • G.M. Arnold, Problem with procrustes analysis, in: Letters to the editor, J. Appl. Stat. 17 (1990) 449-451.
    • (1990) J. Appl. Stat. , vol.17 , pp. 449-451
    • Arnold, G.M.1
  • 33
    • 84977716941 scopus 로고
    • A new significance test for consensus in generalised procrustes analysis
    • Wakeling I.N., Raats M.M., MacFie H.J.H. A new significance test for consensus in generalised procrustes analysis. J. Sens. Stud. 7:1992;91-96.
    • (1992) J. Sens. Stud. , vol.7 , pp. 91-96
    • Wakeling, I.N.1    Raats, M.M.2    MacFie, H.J.H.3
  • 34
    • 0002898477 scopus 로고
    • Multidimensional rotation and scaling of configurations to optimal agreement
    • Peay E.R. Multidimensional rotation and scaling of configurations to optimal agreement. Psychometrika. 53:1988;199-208.
    • (1988) Psychometrika , vol.53 , pp. 199-208
    • Peay, E.R.1
  • 35
    • 0001851799 scopus 로고
    • The interpretation of generalised procrustes analysis and allied methods
    • Dijksterhuis G.B., Gower J.C. The interpretation of generalised procrustes analysis and allied methods. Food Qual. Pref. 3:1991/1992;67-87.
    • (1991) Food Qual. Pref. , vol.3 , pp. 67-87
    • Dijksterhuis, G.B.1    Gower, J.C.2
  • 36
    • 0000280417 scopus 로고
    • Interpreting generalised procrustes analysis 'analysis of variance' tables
    • Dijksterhuis G., Punter P. Interpreting generalised procrustes analysis 'analysis of variance' tables. Food Qual. Pref. 2:1990;255-265.
    • (1990) Food Qual. Pref. , vol.2 , pp. 255-265
    • Dijksterhuis, G.1    Punter, P.2
  • 37
    • 0000598864 scopus 로고
    • Orthogonal procrustes rotation for two or more matrices
    • ten Berge J.M.F. Orthogonal procrustes rotation for two or more matrices. Psychometrika. 42:1977;267-276.
    • (1977) Psychometrika , vol.42 , pp. 267-276
    • Ten Berge, J.M.F.1
  • 38
    • 0002329063 scopus 로고
    • Orthogonal rotations to maximal agreement for two or more matrices of different column orders
    • ten Berge J.M.F., Knol D.L. Orthogonal rotations to maximal agreement for two or more matrices of different column orders. Psychometrika. 49:1984;49-55.
    • (1984) Psychometrika , vol.49 , pp. 49-55
    • Ten Berge, J.M.F.1    Knol, D.L.2
  • 40
    • 0021091051 scopus 로고
    • Steroid D-ring glucuronides: Characterization of a new class of cholestatic agents
    • Vore M., Montgomery C., Meyers M. Steroid D-ring glucuronides: characterization of a new class of cholestatic agents. Drug Metab. Rev. 14(5):1983;1005-1019.
    • (1983) Drug Metab. Rev. , vol.14 , Issue.5 , pp. 1005-1019
    • Vore, M.1    Montgomery, C.2    Meyers, M.3
  • 41
    • 0023216959 scopus 로고
    • Drug-induced intrahepatic cholestasis: Characterization of different pathomechanisms
    • Krell H., Metz J., Jaeschke H., Höke H., Pfaff E. Drug-induced intrahepatic cholestasis: characterization of different pathomechanisms. Arch. Toxicol. 60:1987;124-130.
    • (1987) Arch. Toxicol. , vol.60 , pp. 124-130
    • Krell, H.1    Metz, J.2    Jaeschke, H.3    Höke, H.4    Pfaff, E.5
  • 42
    • 0030772692 scopus 로고    scopus 로고
    • Gene expression in liver after toxic injury: Analysis of heat shock response and oxidative stress-inducible genes
    • Schiaffonati L., Tiberio L. Gene expression in liver after toxic injury: analysis of heat shock response and oxidative stress-inducible genes. Liver. 17:1997;183-191.
    • (1997) Liver , vol.17 , pp. 183-191
    • Schiaffonati, L.1    Tiberio, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.