A phylogenetic hypothesis for the Aizoaceae (Caryophyllales) based on four plastid DNA regions

American Journal of Botany

Volumn 90, Issue 10, 2003, Pages 1433-1445

  Klak, Cornelia ^a   Khunou, Angeline ^b   Reeves, Gail ^b   Hedderson, Terry ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

^b SOUTH AFRICAN NATIONAL BIODIVERSITY INSTITUTE   (South Africa)

Author keywords

Aizoaceae; atpB rbcL; Caryophyllales; Phylogeny; psbA trnH; rps16; trnL F

Indexed keywords

DNA; ENDEMIC SPECIES; PHYLOGENY;

(SOUTHERN); AFRICA;

AIZOACEAE; CARYOPHYLLALES; EMBRYOPHYTA; MESEMBRYANTHEMUM; PHYLLOBOLUS; TETRAGONIA; TRIBULOCARPUS;

EID: 0142038865     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.90.10.1433     Document Type: Article

References (70)

1. ADAMSON, R. S. 1955. The South African species of Aizoaceae. II. Tetragonia. Journal of South African Botany 21: 109-154.
2. ADAMSON, R. S. 1959. The South African species of Aizoaceae VII. Aizoon. Journal of South African Botany 25: 29-51.
3. APG [ANGIOSPERM PHYLOGENY GROUP]. 1998. An ordinal classification for the families of flowering plants. Annals of the Missouri Botanical Garden 85: 531-553.
4. BAKKER, F. T., A. CULHUM, L. C. DAUGHERTY, AND M. GRIBBY. 1999. A trnL-F based phylogeny for species of Pelargonium (Geraniaceae) with small chromosomes. Plant Systematics and Evolution 216: 309-324.
5. BITTRICH, V. 1986. Untersuchungen zu Merkmalsbestand, Gliederung und Abgrenzung der Unterfamilie Mesembryanthemoideae (Mesembryanthemaceae Fenzl.). Mitteilungen aus dem Institut für Allgemeine Botanik Hamburg 21: 5-116.
6. BITTRICH, V. 1990. Systematic studies in Aizoaceae. Mitteilungen aus dem Institut für Allgemeine Botanik Hamburg 23b: 491-507.
7. BITTRICH, V., AND H. E. K. HARTMANN. 1988. The Aizoaceae - a new approach. Botanical Journal of the Linnean Society 97: 239-254.
8. BITTRICH, V., AND M. STRUCK. 1989. What is primitive in Mesembryanthemaceae? An analysis of evolutionary polarity of character states. South African Journal of Botany 55: 321-331.
9. CHASE, M. W., ET AL. 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Annals of the Missouri Botanical Garden 80: 528-580.
10. CHESSELET, P., G. F. SMITH, P. M. BURGOYNE, C. KLAK, S. A. HAMMER, H. E. K. HARTMANN, H. KURZWEIL, E. J. VAN JAARSVELD, B.-E. VAN WYK, AND O. A. LEISTNER. 2000. Mesembryanthemaceae. In O. A. Leistner [ed.], Seed plants of southern Africa: families and genera. Strelitzia 10: 360-410.
11. CHESSELET, P., G. F. SMITH, AND A. E. VAN WYK. 2002. A new tribal classification of Mesembryanthemaceae: evidence from floral nectaries. Taxon 51: 295-308.
12. CUÉNOUD, P., V. SAVOLAINEN, L. W. CHATROU, M. POWELL, R. J. GRAYER, AND M. W. CHASE. 2002. Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK DNA sequences. American Journal of Botany 89: 132-144.
13. DOWNIE, S. R., D. S. KATZ-DOWNIE, AND K.-Y. CHO. 1997. Relationships in the Caryophyllales as suggested by phylogenetic analyses of partial chloroplast DNA ORF 2280 homolog sequences. American Journal of Botany 84: 253-273.
14. DOWNIE, S. R., AND J. D. PALMER. 1994. A chloroplast DNA phylogeny of the Caryophyllales based on structural and inverted repeat restriction site variation. Systematic Botany 19: 236-252.
15. DOYLE, J. J., AND J. S. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
16. ECKHARDT, T. 1976. Classical morphological features of centrospennous families. Plant Systematics and Evolution 126: 27-30.
17. FELSENSTEIN, J. 1985. Confidence limits on phytogenies: an approach using the bootstrap. Evolution 39: 783-791.
18. FITCH, W. M. 1971. Toward defining the course of evolution: minimal change for a specific tree topology. Systematic Zoology 20: 406-416.
19. FORDE, N. 1986. Relationships between birds and fruits in temperate Australia. In H. A. Ford and D. C. Paton [eds.], The dynamic partnership. Birds and plants in Southern Australia, 42-58. Woolman, Government Printer, Adelaide, South Australia, Australia.
20. FRIEDRICH. H. C. 1955. Beiträge zur Kenntnis einiger Familien der Centrospermae. Mitteilungen der Botanischen Staatssammlung München 2: 56- 66.
21. GERBAULET, M. 1995. Phyllobolus N.E.Br. emend. Bittrich (Aizoaceae): a reassessment of generic boundaries. Botanische Jahrbücher für Systematik 117: 385-399.
22. GERBAULET, M. 1996a. Revision of the genus Sceletium N.E.Br. (Aizoaceae). Botanische Jahrbücher für Systematik 118: 9-24.
23. GERBAULET, M. 1996b. Revision of the genus Prenia N.E.Br. (Aizoaceae). Botanische Jahrbücher für Systematik 118: 25-40.
24. GERBAULET, M. 1996c. Revision of the genus Aridaria N.E.Br. (Aizoaceae). Botanische Jahrbücher für Systematik 118: 41-58.
25. GERBAULET, M. 1997. Revision of the genus Phyllobolus N.E.Br. (Aizoaceae). Botanische Jahrbücher für Systematik 119: 145-211.
26. GERBAULET, M. 2001. Mesembryanthemum. In H. E. K. Hartmann [ed.], Illustrated handbook of succulent plants: Aizoaceae F-Z. Springer, Berlin, Germany.
27. GIELLY, L., Y.-M. YUAN, P. KÜPFER, AND P. TABERLET. 1996. Phylogenetic use of noncoding regions in the genus Gentiana L.: chloroplast trnL (UAA) intron versus nuclear ribosomal internal transcribed spacer sequences. Molecular Phylogenetics and Evolution 5: 460-466.
28. HARTMANN, H. E. K. 1988. Fruit types in Mesembryanthema. Beiträge zur Biologie der Pflanzen 63: 313-349.
29. HARTMANN, H. E. K. 1991. Mesembryanthema. Contributions from the Bolus Herbarium 13: 75-157.
30. HARTMANN, H. E. K. 1993. Aizoaceae. In K. Kubitzki, J. G. Rohwer, and V. Bittrich [eds.], The families and genera of vascular plants, vol. 2, 37-69. Springer, Berlin, Germany.
31. HARTMANN, H. E. K. 1998. Groupings in Ruschioideae (Aizoaceae). Mesemb Study Group Bulletin 13: 35-36.
32. HARTMANN, H. E. K. 2001a. Illustrated handbook of succulent plants: Aizoaceae A-E. Springer, Berlin, Germany.
33. HARTMANN, H. E. K. 2001b. Illustrated handbook of succulent plants: Aizoaceae F-Z. Springer, Berlin, Germany.
34. HARTMANN, H. E. K., AND C. BRUCKMANN. 2000. The capsules of Drosanthemum Schwantes (Ruschioideae, Aizoaceae). Bradleya 18: 75-112.
35. HOFMANN, U. 1973. Centrospermen-Studien 6. Morphologische Untersuchungen zur Umgrenzung und Gliederung der Aizoaceen. Botanische Jahrbücher für Systematik 93: 247-324.
36. HUTCHINSON, J. 1926. The families of flowering plants I. Dicotyledons. 128-129. MacMillan, London, U.K.
37. IHLENFELDT, H.-D. 1960. Entwicklungsgeschichtliche, morphologische und systematische Untersuchungen an Mesembryanthemen. Feddes Repertorium specierum novarum regni vegetabilis 63: 1-104.
38. IHLENFELDT, H.-D. 1994. Diversification in an arid world: the Mesembryanthemaceae. Annual Review of Ecology and Systematics 25: 521-46.
39. IHLENFELDT, H.-D., AND V. BITTRICH. 1985. Morphologie, Gliederung und Abgrenzung der Gattung Psilocaulon N.E.Br. s. l. (Mesembryanthemaceae). Botanische Jahrbücher für Systematik 105: 289-322.
40. IHLENFELDT, H.-D., AND H. STRAKA. 1962. Über die systematische Stellung und Gliederung der Mesembryanthemen. Berichte der Deutschen Botanischen Gesellschaft 74: 485-492.
41. JÜRGENS, N. 1986. Untersuchungen zur Ökologie sukkulenter Pflanzen des südlichen Afrika. Mitteilungen aus dem Institut für Allgemeine Botanik Hamburg 21: 139-365.
42. KIM, J. H., H. T'HART, AND T. H. M. MES. 1996. The phylogenetic position of East Asian Sedum species (Crassulaceae) based on chloroplast DNA trnL (UAA)-trnF (GAA) intergenic spacer sequence variation. Acta Botanica Neerlandica 45: 309-321.
43. KLAK, C., T. A. HEDDERSON, AND H. P. LINDER. 2003. A molecular systematic study of the Lampranthus group (Aizoaceae) based on the chloroplast trnL-trnF and nuclear ITS and 5S NTS sequence data. Systematic Botany. 28: 70-85.
44. KLAK, C., AND H. P. LINDER. 1998. Systematics of Psilocaulon N.E.Br. and Caulipsolon Klak gen. nov. (Mesembryanthemoideae, Aizoaceae). Botanische Jahrbücher für Systematik 120: 301-375.
45. LANDRUM, J. V. 2001. Wide-band tracheids in leaves of genera in Aizoaceae: the systematic occurrence of a novel cell type and its implications for the monophyly of the subfamily Ruschioideae. Plant Systematics and Evolution 221: 49-61.
46. LIDÉN, M., T. FUKUHARA, J. RYLANDER, AND B. OXELMAN. 1997. Phylogeny and classification of Fumariaceae, with emphasis on Dicentra s.l., based on the plastid gene rps16 intron. Plant Systematics and Evolution 206: 411-420.
47. MANEN, J.-F., A. NATALI, AND F. EHRENDORFER. 1994. Phylogeny of Rubiaceae-Rubieae inferred from the sequence of a cpDNA intergene region. Plant Systematics and Evolution 190: 195-211.
48. MCCARTHY, C. 1996-1997. Chromas version 1.43. School of Biomolecular and Biomedical Science, Brisbane, Queensland, Australia.
49. MES, T. H. M., G. J. WIEJERS, AND H. T'HART. 1997. Phylogenetic relationhips in Monanthes (Crassulaceae) based on morphological, chloroplast and nuclear DNA variation. Journal of Evolutionary Biology 10: 193-216.
50. MOORE, S. 1921. Alabastra diversa 34.1. Plantae Rogersianae - V1. Journal of Botany 59: 226-232.
51. NICHOLAS, K. B., AND H. B. NICHOLAS, JR. 1997. GeneDoc, version 2.6.002: a tool for editing and annotating multiple sequence alignments. Available at www.psc.edu/biomed/genedoc/index.html.
52. OXELMAN, B., M. LIDÉN, AND D. BERGLUND. 1997. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution 206: 393-410.
53. PAX, F. 1889. Aizoaceae. In A. Engler and K. Prantl [eds.], Die natürlichen Pflanzenfamilien, part 3 (I.b.). 33-51. W. Engelmann, Leipzig, Germany.
54. RETTIG, J. H., H. D. WILSON, AND J. R. MANHART. 1992. Phylogeny of Caryophyllales - gene sequence data. Taxon 41: 201-209.
55. RICHARDSON, J. E., R. T. PENNINGTON, T. D. PENNINGTON, AND P. M. HOLLONGSWORTH. 2001. Rapid diversification of a species-rich genus of neotropical rain forest trees. Science 293: 2242-2245.
56. SAGHAI-MAROOF, M. A., K. M. SOLIMAN, R. A. JORGENSEN, AND R. W. ALLARD. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. Proceedings of the National Academy of Sciences, USA 81: 8014-8018.
57. SANG, T., D. J. CRAWFORD, AND T. F. STUESSY. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136.
58. SAVOLAINEN, V., ET AL. 2000. Phylogeny of the eudicots: a nearly complete familial analysis based on rbcL gene sequences. Kew Bulletin 55: 257-309.
59. SCHWANTES, G. 1927. Zur Systematik der Mesembrianthemen. Zeitschrift für Sukkulentenkunde 3: 14-30.
60. SCHWANTES, G. 1947. System der Mesembryanthemaceen. Sukkulentenkunde 1: 34-40.
61. SCHWANTES, G. 1957. Flowering stones and mid-day flowers. Ernest Benn, London, UK.
62. SCHWANTES, G. 1971. The classification of the Mesembryanthemaceae. In H. Herre [ed.], The genera of the Mesembryanthemaceae. Tafelberg, Cape Town, South Africa.
63. SHMIDA, A. 1985. Biogeography of the Desert Flora. In M. Evenary, D. W. Goodall, and I. Noy-Meir [eds.], Ecosystems of the world 12A. Hot deserts and arid shrublands. 23-77. Elsevier, Amsterdam, Netherlands.
64. SIMMONS, M. P., AND H. OCHOTERENA. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
65. SOLTIS, D. E., ET AL. 1997. Angiosperm phylogeny inferred from 18S ribosomal DNA sequences. Annals of the Missouri Botanical Garden 84: 1-49.
66. SOLTIS, D. E., ET AL. 2000. Angiosperm phylogeny inferred from a combined data set of 18S rDNA, rbcL, and atpB sequences. Botanical Journal of the Linnean Society 133: 381-461.
67. SWOFFORD, D. L. 2000. PAUP*: phylogenetic analysis using parsimony (and other methods), version 4.0b4. Sinauer Associates, Sunderland, Massachusetts, USA.
68. TABERLET, P., L. GIELLY, G. PAUTOU, AND J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
69. THULIN, M. 1993. Notes on Tetragonia (Aizoaceae - Tetragonioideae) in Somalia. Nordic Journal of Botany 13: 165-167.
70. TROLL, W., AND F. WEBERLING. 1981. Infloreszenzstudien an Aizoaceen, Mesembryanthemaceen und Tetragoniaceen. Tropische und Subtropische Pflanzenwelt 35: 195-289.