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Volumn 17, Issue 4, 2000, Pages 601-615

Evolution of nucleotide substitutions and gene regulation in the amylase multigenes in Drosophila kikkawai and its sibling species

Author keywords

Adaptive evolution; Amylase (Amy) gene; Codon bias; Drosophila; Gene duplication; Gene expression

Indexed keywords

AMYLASE; ISOENZYME;

EID: 0034035023     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026339     Document Type: Article
Times cited : (29)

References (45)
  • 1
    • 0030878666 scopus 로고    scopus 로고
    • Crustacean appendage evolution associated with changes in Hox gene expression
    • AVEROF, M., and N. H. PATEL. 1997. Crustacean appendage evolution associated with changes in Hox gene expression. Nature 388:682-686.
    • (1997) Nature , vol.388 , pp. 682-686
    • Averof, M.1    Patel, N.H.2
  • 2
    • 0022483116 scopus 로고
    • Glucose repression of amylase gene expression in Drosophila melanogaster
    • BENKEL, B. F., and D. A. HICKEY. 1986. Glucose repression of amylase gene expression in Drosophila melanogaster. Genetics 114:137-144.
    • (1986) Genetics , vol.114 , pp. 137-144
    • Benkel, B.F.1    Hickey, D.A.2
  • 3
    • 0023047173 scopus 로고
    • The alpha-amylase gene in Drosophila melanogaster. Nucleotide sequence, gene structure and expression motifs
    • BORE, P. H., and D. A. HICKEY. 1986. The alpha-amylase gene in Drosophila melanogaster. Nucleotide sequence, gene structure and expression motifs. Nucleic Acids Res. 14: 8399-8411.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 8399-8411
    • Bore, P.H.1    Hickey, D.A.2
  • 4
    • 0025153495 scopus 로고
    • DNA sequence evolution of the amylase multigene family in Drosophila pseudoobscura
    • BROWN, C. J., C. F. AQUADRO, and W. W. ANDERSON. 1990. DNA sequence evolution of the amylase multigene family in Drosophila pseudoobscura. Genetics 126:131-138.
    • (1990) Genetics , vol.126 , pp. 131-138
    • Brown, C.J.1    Aquadro, C.F.2    Anderson, W.W.3
  • 5
    • 0028608149 scopus 로고
    • Molecular analysis of cis-regulatory sequences of the α-amylase gene in D. Melanogaster: A short 5′-flanking region of Amy distal gene is required for full expression of Amy proximal gene
    • CHOI, J. I., and T. YAMAZAKI. 1994. Molecular analysis of cis-regulatory sequences of the α-amylase gene in D. melanogaster: a short 5′-flanking region of Amy distal gene is required for full expression of Amy proximal gene. Jpn. J. Genet. 69:619-635.
    • (1994) Jpn. J. Genet. , vol.69 , pp. 619-635
    • Choi, J.I.1    Yamazaki, T.2
  • 6
    • 0026624828 scopus 로고
    • Multiple amylase genes in Drosophila ananassae and related species
    • DA LAGE, J. L., F. LEMEUNIER, M. L. CARIOU, and J. R. DAVID. 1992. Multiple amylase genes in Drosophila ananassae and related species. Genet. Res. 59:85-92.
    • (1992) Genet. Res. , vol.59 , pp. 85-92
    • Da Lage, J.L.1    Lemeunier, F.2    Cariou, M.L.3    David, J.R.4
  • 7
    • 13144251113 scopus 로고    scopus 로고
    • Amyrel, a paralogous gene of the amylase gene family in Drosophila melanogaster and the sophophora subgenus
    • DA LAGE, J. L., E. RENARD, F. CHARTOIS, F. LEMEUNIER, and M. L. CARIOU. 1998. Amyrel, a paralogous gene of the amylase gene family in Drosophila melanogaster and the Sophophora subgenus. Proc. Natl. Acad. Sci. USA 95:6848-6853.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 6848-6853
    • Da Lage, J.L.1    Renard, E.2    Chartois, F.3    Lemeunier, F.4    Cariou, M.L.5
  • 8
    • 0029837344 scopus 로고    scopus 로고
    • Distribution and evolution of introns in Drosophila amylase genes
    • DA LAGE, J. L., M. WEGNEZ, and M. L. CARIOU. 1996. Distribution and evolution of introns in Drosophila amylase genes. J. Mol. Evol. 43:334-347.
    • (1996) J. Mol. Evol. , vol.43 , pp. 334-347
    • Da Lage, J.L.1    Wegnez, M.2    Cariou, M.L.3
  • 9
    • 0000713679 scopus 로고
    • Evolution of regulatory genes and patterns in Drosophila
    • M. K. HECHT, B. WALLACE, and R. J. MACINTYRE, eds. Plenum Press, New York, London
    • DICKINSON, W. J. 1991. Evolution of regulatory genes and patterns in Drosophila. Pp. 127-173 in M. K. HECHT, B. WALLACE, and R. J. MACINTYRE, eds. Evolutionary biology. Vol. 25. Plenum Press, New York, London.
    • (1991) Evolutionary Biology , vol.25 , pp. 127-173
    • Dickinson, W.J.1
  • 10
    • 84981878807 scopus 로고
    • Amylase variants in Drosophila melanogaster: Linkage studies and characterization of enzyme extracts
    • DOANE, W. W. 1969. Amylase variants in Drosophila melanogaster: linkage studies and characterization of enzyme extracts. J. Exp. Zool. 171:321-342.
    • (1969) J. Exp. Zool. , vol.171 , pp. 321-342
    • Doane, W.W.1
  • 11
    • 0021085263 scopus 로고
    • Lambda replacement vectors carrying polylinker sequences
    • FRICHAUF, A. M., H. LEHRACH, A. POUSTKA, and N. MURRAY. 1983. Lambda replacement vectors carrying polylinker sequences. J. Mol. Biol. 170:827-842.
    • (1983) J. Mol. Biol. , vol.170 , pp. 827-842
    • Frichauf, A.M.1    Lehrach, H.2    Poustka, A.3    Murray, N.4
  • 12
    • 0020448905 scopus 로고
    • Regulation of amylase activity in Drosophila melanogaster: Effects of dietary carbohydrate
    • HICKEY, D. A., and B. BENKEL. 1982. Regulation of amylase activity in Drosophila melanogaster: effects of dietary carbohydrate. Biochem. Genet. 20:1117-1129.
    • (1982) Biochem. Genet. , vol.20 , pp. 1117-1129
    • Hickey, D.A.1    Benkel, B.2
  • 14
    • 0027979266 scopus 로고
    • ODEN: A program package for molecular evolutionary analysis and database search of DNA and amino acid sequences
    • INA, Y. 1994. ODEN: a program package for molecular evolutionary analysis and database search of DNA and amino acid sequences. CABIOS 10:11-12.
    • (1994) CABIOS , vol.10 , pp. 11-12
    • Ina, Y.1
  • 15
    • 0029617214 scopus 로고
    • Evolution of the response pattern to dietary carbohydrates and the developmental differentiation of gene expression of α-amylase in Drosophila
    • INOMATA, N., K. KANDA, M. L. CARIOU, H. TACHIDA, and T. YAMAZAKI. 1995a. Evolution of the response pattern to dietary carbohydrates and the developmental differentiation of gene expression of α-amylase in Drosophila. J. Mol. Evol. 41:1076-1084.
    • (1995) J. Mol. Evol. , vol.41 , pp. 1076-1084
    • Inomata, N.1    Kanda, K.2    Cariou, M.L.3    Tachida, H.4    Yamazaki, T.5
  • 16
    • 0029152118 scopus 로고
    • Evolutionary relationships and sequence variation of α-amylase variants encoded by duplicated genes in the Amy locus of Drosophila melanogaster
    • INOMATA, N., H. SHIBATA, E. OKUYAMA, and T. YAMAZAKI. 1995b. Evolutionary relationships and sequence variation of α-amylase variants encoded by duplicated genes in the Amy locus of Drosophila melanogaster. Genetics 141:237-244.
    • (1995) Genetics , vol.141 , pp. 237-244
    • Inomata, N.1    Shibata, H.2    Okuyama, E.3    Yamazaki, T.4
  • 17
    • 0030729704 scopus 로고    scopus 로고
    • Molecular evolution of the Amy multigenes in the subgenus Sophophora of Drosophila
    • INOMATA, N., H. TACHIDA, and T. YAMAZAKI. 1997. Molecular evolution of the Amy multigenes in the subgenus Sophophora of Drosophila. Mol. Biol. Evol. 14:942-950.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 942-950
    • Inomata, N.1    Tachida, H.2    Yamazaki, T.3
  • 18
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. MUNRO, eds. Academic Press, New York
    • JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. N. MUNRO, eds. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 19
    • 84996273550 scopus 로고
    • An electrophoretic study on Amylase in Drosophila melanogaster
    • KIKKAWA, H. 1964. An electrophoretic study on Amylase in Drosophila melanogaster. Jpn. J. Genet. 39:401-411.
    • (1964) Jpn. J. Genet. , vol.39 , pp. 401-411
    • Kikkawa, H.1
  • 21
    • 0016669094 scopus 로고
    • Evolution at two levels in human and chimpanzees
    • KING, M.-C., and A. C. WILSON. 1975. Evolution at two levels in human and chimpanzees. Science 188:107-116.
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.-C.1    Wilson, A.C.2
  • 22
    • 0021947931 scopus 로고
    • Molecular cloning of alpha-amylase genes from Drosophila melanogaster. II. Clone organization and verification
    • LEVY, J. N., R. M. GEMMILL, and W. W. DOANE. 1985. Molecular cloning of alpha-amylase genes from Drosophila melanogaster. II. Clone organization and verification. Genetics 110:313-324.
    • (1985) Genetics , vol.110 , pp. 313-324
    • Levy, J.N.1    Gemmill, R.M.2    Doane, W.W.3
  • 23
    • 0027407596 scopus 로고
    • Functional conservation of a glucose-repressible amylase gene promoter from Drosophila virilis in Drosophila melanogaster
    • MAGOULAS, C., A. LOVERRE-CHYURLIA, S. ABUKASHAWA, L. BALLY-CUIF, and D. A. HICKEY. 1993. Functional conservation of a glucose-repressible amylase gene promoter from Drosophila virilis in Drosophila melanogaster. J. Mol. Evol. 36:234-242.
    • (1993) J. Mol. Evol. , vol.36 , pp. 234-242
    • Magoulas, C.1    Loverre-Chyurlia, A.2    Abukashawa, S.3    Bally-Cuif, L.4    Hickey, D.A.5
  • 25
    • 0033405579 scopus 로고    scopus 로고
    • Evolution of the amylase isozymes in Drosophila melanogaster species subgroup
    • MATSUO, Y., N. INOMATA, and T. YAMAZAKI. 1999. Evolution of the amylase isozymes in Drosophila melanogaster species subgroup. Biochem. Genet. 37:289-300.
    • (1999) Biochem. Genet. , vol.37 , pp. 289-300
    • Matsuo, Y.1    Inomata, N.2    Yamazaki, T.3
  • 26
    • 0021703197 scopus 로고
    • Genetic analysis of natural populations of Drosophila melanogaster in Japan. IV. Natural selection on the inducibility, but not on the structural genes, of amylase loci
    • MATSUO, Y., and T. YAMAZAKI. 1984. Genetic analysis of natural populations of Drosophila melanogaster in Japan. IV. Natural selection on the inducibility, but not on the structural genes, of amylase loci. Genetics 108:879-896.
    • (1984) Genetics , vol.108 , pp. 879-896
    • Matsuo, Y.1    Yamazaki, T.2
  • 27
    • 0023449236 scopus 로고
    • A short 5′-flanking DNA region is sufficient for developmentally correct expression of moth chorion genes in Drosophila
    • MITSIALIS, S. A., N. SPOEREL, M. LEVITEN, and F. C. KAFATOS. 1987. A short 5′-flanking DNA region is sufficient for developmentally correct expression of moth chorion genes in Drosophila. Proc. Natl. Acad. Sci. USA 84:7987-7991.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 7987-7991
    • Mitsialis, S.A.1    Spoerel, N.2    Leviten, M.3    Kafatos, F.C.4
  • 28
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • NEI, M., and T. GOJOBORI. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 30
    • 0003160625 scopus 로고
    • Multigene and supergene families
    • P. H. HARVEY and L. PARTRIDGE, eds. Oxford University Press, Oxford, England
    • OHTA, T. 1988. Multigene and supergene families. Pp. 41-65 in P. H. HARVEY and L. PARTRIDGE, eds. Oxford surveys in evolutionary biology. Vol 5. Oxford University Press, Oxford, England.
    • (1988) Oxford Surveys in Evolutionary Biology , vol.5 , pp. 41-65
    • Ohta, T.1
  • 31
    • 0025936264 scopus 로고
    • Multigene and families and evolution of complexity
    • _. 1991. Multigene and families and evolution of complexity. J. Mol. Evol. 33:34-41.
    • (1991) J. Mol. Evol. , vol.33 , pp. 34-41
  • 32
    • 0029913914 scopus 로고    scopus 로고
    • Molecular evolution of the 5′-flanking regions of the duplicated Amy genes in Drosophila melanogaster species subgroup
    • OKUYAMA, E., H. SHIBATA, H. TACHIDA, and T. YAMAZAKI. 1996. Molecular evolution of the 5′-flanking regions of the duplicated Amy genes in Drosophila melanogaster species subgroup. Mol. Biol. Evol. 13:574-583.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 574-583
    • Okuyama, E.1    Shibata, H.2    Tachida, H.3    Yamazaki, T.4
  • 33
    • 0029000324 scopus 로고
    • Evidence for gene conversion in the amylase multigene family of Drosophila pseudoobscura
    • POPADIC, A., and W. W. ANDERSON. 1995. Evidence for gene conversion in the amylase multigene family of Drosophila pseudoobscura. Mol. Biol. Evol. 12:564-572.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 564-572
    • Popadic, A.1    Anderson, W.W.2
  • 34
    • 0029943217 scopus 로고    scopus 로고
    • The evolutionary history of the amylase multigene family in Drosophila pseudoobscura
    • POPADIC, A., R. A. NORMAN, W. W. DOANE, and W. W. ANDERSON. 1996. The evolutionary history of the amylase multigene family in Drosophila pseudoobscura. Mol. Biol. Evol. 13:883-888.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 883-888
    • Popadic, A.1    Norman, R.A.2    Doane, W.W.3    Anderson, W.W.4
  • 35
    • 0018448569 scopus 로고
    • Replication in Drosophila chromosomes: Part II - Unusual replicative behaviour of two puff sites in polytene nuclei of Drosophila kikkawai
    • ROY, S., and S. C. LAKHOTIA. 1979. Replication in Drosophila chromosomes: part II - unusual replicative behaviour of two puff sites in polytene nuclei of Drosophila kikkawai. Indian J. Exp. Biol. 17:231-238.
    • (1979) Indian J. Exp. Biol. , vol.17 , pp. 231-238
    • Roy, S.1    Lakhotia, S.C.2
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 37
    • 0029154609 scopus 로고
    • Molecular evolution of the duplicated Amy locus in Drosophila melanogaster species subgroup: Concerted evolution only in coding region and excess of nonsynonymous substitutions in speciation
    • SHIBATA, H., and T YAMAZAKI. 1995. Molecular evolution of the duplicated Amy locus in Drosophila melanogaster species subgroup: concerted evolution only in coding region and excess of nonsynonymous substitutions in speciation. Genetics 141:223-236.
    • (1995) Genetics , vol.141 , pp. 223-236
    • Shibata, H.1    Yamazaki, T.2
  • 38
    • 0023652058 scopus 로고
    • Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases
    • SHIELDS, D. C., and P. M. SHARP. 1987. Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res. 15:8023-8040.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8023-8040
    • Shields, D.C.1    Sharp, P.M.2
  • 39
    • 0024116811 scopus 로고
    • Silent" sites in Drosophila genes are not neutral: Evidence of selection among synonymous codons
    • SHIELDS, D. C., P. M. SHARP, D. G. HIGGINS, and F. WRIGHT. 1988. "Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol. Biol. Evol. 5:704-716.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 704-716
    • Shields, D.C.1    Sharp, P.M.2    Higgins, D.G.3    Wright, F.4
  • 40
    • 0032928124 scopus 로고    scopus 로고
    • The amylase gene cluster on the evolving sex chromosomes of Drosophila miranda
    • STEINEMANN, S., and M. STEINEMANN. 1999. The amylase gene cluster on the evolving sex chromosomes of Drosophila miranda. Genetics 151:151-161.
    • (1999) Genetics , vol.151 , pp. 151-161
    • Steinemann, S.1    Steinemann, M.2
  • 41
    • 0027453388 scopus 로고
    • Simple methods for testing the molecular evolutionary clock hypothesis
    • TAJIMA, F. 1993. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics 135:599-607.
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 42
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0033399854 scopus 로고    scopus 로고
    • Is the difference in α-amylase activity in the strains of Drosophila melanogaster with different allozymes due to transcriptional control?
    • YAMATE, N., and T. YAMAZAKI. 1999. Is the difference in α-amylase activity in the strains of Drosophila melanogaster with different allozymes due to transcriptional control? Biochem. Genet. 37:345-356.
    • (1999) Biochem. Genet. , vol.37 , pp. 345-356
    • Yamate, N.1    Yamazaki, T.2
  • 44
    • 0021135397 scopus 로고
    • Genetic analysis of natural populations of Drosophila melanogaster in Japan. III. Genetic variability of inducing factors of amylase and fitness
    • YAMAZAKI, T., and Y. MATSUO. 1984. Genetic analysis of natural populations of Drosophila melanogaster in Japan. III. Genetic variability of inducing factors of amylase and fitness. Genetics 108:223-235.
    • (1984) Genetics , vol.108 , pp. 223-235
    • Yamazaki, T.1    Matsuo, Y.2
  • 45
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • ZHANG, J., H. F. ROSENBERG, and M. NEI. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. USA 95:3708-3713.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3


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