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Volumn 332, Issue 3, 2003, Pages 585-600

Slipped (CTG)·(CAG) repeats of the myotonic dystrophy locus: Surface probing with Anti-DNA antibodies

Author keywords

Anti DNA antibodies; DNA slipped structures; Electrophoresis; Myotonic dystrophy type 1; Trinucleotide repeat

Indexed keywords

CELL PROTEIN; CYTOSINE; DNA; DNA ANTIBODY; DNA HYBRID; DNA Z; DOUBLE STRANDED DNA; GUANINE; THYMINE; ANTINUCLEAR ANTIBODY; ATAXIN 1; ATAXIN-1; HETERODUPLEX; MAGNESIUM; NERVE PROTEIN; NUCLEAR PROTEIN; NUCLEOSIDE;

EID: 0141905026     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(03)00880-5     Document Type: Article
Times cited : (26)

References (43)
  • 1
    • 0042759661 scopus 로고    scopus 로고
    • The contribution of cis-elements to disease-associated repeat instability: Clinical and experimental evidence
    • In the press
    • Cleary J.D., Pearson C.E. The contribution of cis-elements to disease-associated repeat instability: clinical and experimental evidence. Cytogenet. Genome Res. 2003;. In the press.
    • (2003) Cytogenet. Genome Res.
    • Cleary, J.D.1    Pearson, C.E.2
  • 2
    • 0029883805 scopus 로고    scopus 로고
    • Alternative structures in duplex DNA formed within the trinucleotide repeats of the myotonic dystrophy and fragile X loci
    • Pearson C.E., Sinden R.R. Alternative structures in duplex DNA formed within the trinucleotide repeats of the myotonic dystrophy and fragile X loci. Biochemistry. 35:1996;5041-5053.
    • (1996) Biochemistry , vol.35 , pp. 5041-5053
    • Pearson, C.E.1    Sinden, R.R.2
  • 3
    • 0032562132 scopus 로고    scopus 로고
    • Interruptions in the triplet repeats of SCA1 and FRAXA reduce the propensity and complexity of slipped strand DNA (S-DNA) formation
    • Pearson C.E., Eichler E.E., Lorenzetti D., Kramer S.F., Zoghbi H.Y., Nelson D.L., Sinden R.R. Interruptions in the triplet repeats of SCA1 and FRAXA reduce the propensity and complexity of slipped strand DNA (S-DNA) formation. Biochemistry. 37:1998;2701-2708.
    • (1998) Biochemistry , vol.37 , pp. 2701-2708
    • Pearson, C.E.1    Eichler, E.E.2    Lorenzetti, D.3    Kramer, S.F.4    Zoghbi, H.Y.5    Nelson, D.L.6    Sinden, R.R.7
  • 5
    • 0036578758 scopus 로고    scopus 로고
    • Evidence of cis-acting factors in replication-mediated trinucleotide repeat instability in primate cells
    • Cleary J.D., Nichol K., Wang Y.H., Pearson C.E. Evidence of cis-acting factors in replication-mediated trinucleotide repeat instability in primate cells. Nature Genet. 31:2002;37-46.
    • (2002) Nature Genet. , vol.31 , pp. 37-46
    • Cleary, J.D.1    Nichol, K.2    Wang, Y.H.3    Pearson, C.E.4
  • 6
    • 0037133931 scopus 로고    scopus 로고
    • In vitro (CTG)(CAG) expansions and deletions by human cell extracts
    • Panigrahi G.B., Cleary J.D., Pearson C.E. In vitro (CTG)(CAG) expansions and deletions by human cell extracts. J. Biol. Chem. 277:2002;13926-13934.
    • (2002) J. Biol. Chem. , vol.277 , pp. 13926-13934
    • Panigrahi, G.B.1    Cleary, J.D.2    Pearson, C.E.3
  • 7
    • 2642689662 scopus 로고    scopus 로고
    • Structural analysis of slipped-strand DNA (S-DNA) formed in (CTG)n·(CAG)n repeats from the myotonic dystrophy locus
    • Pearson C.E., Wang Y.H., Griffith J.D., Sinden R.R. Structural analysis of slipped-strand DNA (S-DNA) formed in (CTG)n·(CAG)n repeats from the myotonic dystrophy locus. Nucl. Acids Res. 26:1998;816-823.
    • (1998) Nucl. Acids Res. , vol.26 , pp. 816-823
    • Pearson, C.E.1    Wang, Y.H.2    Griffith, J.D.3    Sinden, R.R.4
  • 8
    • 0032102835 scopus 로고    scopus 로고
    • Trinucleotide repeat DNA structures: Dynamic mutations from dynamic DNA
    • Pearson C.E., Sinden R.R. Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA. Curr. Opin. Struct. Biol. 8:1998;321-330.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 321-330
    • Pearson, C.E.1    Sinden, R.R.2
  • 9
    • 0028846524 scopus 로고
    • Anomalous rapid electrophoretic mobility of DNA containing triplet repeats associated with human disease genes
    • Chastain P.D. II, Eichler E.E., Kang S., Nelson D.L., Levene S.D., Sinden R.R. Anomalous rapid electrophoretic mobility of DNA containing triplet repeats associated with human disease genes. Biochemistry. 34:1995;16125-16131.
    • (1995) Biochemistry , vol.34 , pp. 16125-16131
    • Chastain P.D. II1    Eichler, E.E.2    Kang, S.3    Nelson, D.L.4    Levene, S.D.5    Sinden, R.R.6
  • 10
    • 0032559372 scopus 로고    scopus 로고
    • CTG repeats associated with human genetic disease are inherently flexible
    • Chastain P.D., Sinden R.R. CTG repeats associated with human genetic disease are inherently flexible. J. Mol. Biol. 275:1998;405-411.
    • (1998) J. Mol. Biol. , vol.275 , pp. 405-411
    • Chastain, P.D.1    Sinden, R.R.2
  • 11
    • 0028278444 scopus 로고
    • Association of poly(CA)·poly(TG) DNA fragments into four-stranded complexes bound by HMG1 and 2
    • Gaillard C., Strauss F. Association of poly(CA)·poly(TG) DNA fragments into four-stranded complexes bound by HMG1 and 2. Science. 264:1994;433-436.
    • (1994) Science , vol.264 , pp. 433-436
    • Gaillard, C.1    Strauss, F.2
  • 13
    • 0025125851 scopus 로고
    • The role of metal ions in the conformation of the four-way DNA junction
    • Duckett D.R., Murchie A.I., Lilley D.M. The role of metal ions in the conformation of the four-way DNA junction. EMBO J. 9:1990;583-590.
    • (1990) EMBO J. , vol.9 , pp. 583-590
    • Duckett, D.R.1    Murchie, A.I.2    Lilley, D.M.3
  • 14
  • 15
    • 0014413352 scopus 로고
    • Kinetics of renaturation of DNA
    • Wetmur J.G., Davidson N. Kinetics of renaturation of DNA. J. Mol. Biol. 31:1968;349-370.
    • (1968) J. Mol. Biol. , vol.31 , pp. 349-370
    • Wetmur, J.G.1    Davidson, N.2
  • 16
    • 0021997474 scopus 로고
    • DNA bending induced by cruciform formation
    • Gough G.W., Lilley D.M. DNA bending induced by cruciform formation. Nature. 313:1985;154-156.
    • (1985) Nature , vol.313 , pp. 154-156
    • Gough, G.W.1    Lilley, D.M.2
  • 19
    • 0024543422 scopus 로고
    • Characterization of the binding specificity of two anticruciform DNA monoclonal antibodies
    • Frappier L., Price G.B., Martin R.G., Zannis-Hadjopoulos M. Characterization of the binding specificity of two anticruciform DNA monoclonal antibodies. J. Biol. Chem. 264:1989;334-341.
    • (1989) J. Biol. Chem. , vol.264 , pp. 334-341
    • Frappier, L.1    Price, G.B.2    Martin, R.G.3    Zannis-Hadjopoulos, M.4
  • 20
    • 0028811292 scopus 로고
    • Anti-cruciform monoclonal antibody and cruciform DNA interaction
    • Steinmetzer K., Zannis-Hadjopoulos M., Price G.B. Anti-cruciform monoclonal antibody and cruciform DNA interaction. J. Mol. Biol. 254:1995;29-37.
    • (1995) J. Mol. Biol. , vol.254 , pp. 29-37
    • Steinmetzer, K.1    Zannis-Hadjopoulos, M.2    Price, G.B.3
  • 22
    • 0022448650 scopus 로고
    • Binding of cis- and trans-diaminedichloroplatinum(II) to deoxyribonucleic acid exposes nucleosides as measured immunochemically with anti-nucleoside antibodies
    • Sundquist W.I., Lippard S.J., Stollar B.D. Binding of cis- and trans-diaminedichloroplatinum(II) to deoxyribonucleic acid exposes nucleosides as measured immunochemically with anti-nucleoside antibodies. Biochemistry. 25:1986;1520-1524.
    • (1986) Biochemistry , vol.25 , pp. 1520-1524
    • Sundquist, W.I.1    Lippard, S.J.2    Stollar, B.D.3
  • 23
    • 0043260787 scopus 로고
    • Immunological approaches to the definition of unusual nucleic acid structures
    • R.A. Wells. New York: Springer
    • Stollar B.D. Immunological approaches to the definition of unusual nucleic acid structures. Wells R.A. Unusual DNA Structures. 1988;253-265 Springer, New York.
    • (1988) Unusual DNA Structures , pp. 253-265
    • Stollar, B.D.1
  • 24
    • 0033395227 scopus 로고    scopus 로고
    • Left-handed Z-DNA: Structure and function
    • Herbert A., Rich A. Left-handed Z-DNA: structure and function. Genetica. 106:1999;37-47.
    • (1999) Genetica , vol.106 , pp. 37-47
    • Herbert, A.1    Rich, A.2
  • 25
    • 0023056961 scopus 로고
    • Conformational DNA transition in the in vitro torsionally strained chicken beta-globin 5′ region
    • Runkel L., Nordheim A. Conformational DNA transition in the in vitro torsionally strained chicken beta-globin 5′ region. Nucl. Acids Res. 14:1986;7143-7158.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 7143-7158
    • Runkel, L.1    Nordheim, A.2
  • 26
    • 0025089408 scopus 로고
    • Characterization of anti-Z-DNA antibody binding sites on Z-DNA by nuclear magnetic resonance spectroscopy
    • Sanford D.G., Stollar B.D. Characterization of anti-Z-DNA antibody binding sites on Z-DNA by nuclear magnetic resonance spectroscopy. J. Biol. Chem. 265:1990;18608-18614.
    • (1990) J. Biol. Chem. , vol.265 , pp. 18608-18614
    • Sanford, D.G.1    Stollar, B.D.2
  • 27
    • 0022966903 scopus 로고
    • A monoclonal anti-double stranded DNA antibody from an autoimmune MRL/Mp-lpr/lpr mouse: Specificity and idiotype in serum immunoglobulins
    • Kubota T., Akatsuka T., Kanai Y. A monoclonal anti-double stranded DNA antibody from an autoimmune MRL/Mp-lpr/lpr mouse: specificity and idiotype in serum immunoglobulins. Immunol. Letters. 14:1986;53-58.
    • (1986) Immunol. Letters , vol.14 , pp. 53-58
    • Kubota, T.1    Akatsuka, T.2    Kanai, Y.3
  • 28
    • 0030752987 scopus 로고    scopus 로고
    • Human MSH2 binds to trinucleotide repeat DNA structures associated with neurodegenerative diseases
    • Pearson C.E., Ewel A., Acharya S., Fishel R.A., Sinden R.R. Human MSH2 binds to trinucleotide repeat DNA structures associated with neurodegenerative diseases. Hum. Mol. Genet. 6:1997;1117-1123.
    • (1997) Hum. Mol. Genet. , vol.6 , pp. 1117-1123
    • Pearson, C.E.1    Ewel, A.2    Acharya, S.3    Fishel, R.A.4    Sinden, R.R.5
  • 29
    • 0025862101 scopus 로고
    • Effect of sequence on the structure of three-arm DNA junctions
    • Lu M., Guo Q., Kallenbach N.R. Effect of sequence on the structure of three-arm DNA junctions. Biochemistry. 30:1991;5815-5820.
    • (1991) Biochemistry , vol.30 , pp. 5815-5820
    • Lu, M.1    Guo, Q.2    Kallenbach, N.R.3
  • 30
    • 0034388126 scopus 로고    scopus 로고
    • Solution structure of a DNA three-way junction containing two unpaired thymidine bases. Identification of sequence features that decide conformer selection
    • van Buuren B.N., Overmars F.J., Ippel J.H., Altona C., Wijmenga S.S. Solution structure of a DNA three-way junction containing two unpaired thymidine bases. Identification of sequence features that decide conformer selection. J. Mol. Biol. 304:2000;371-383.
    • (2000) J. Mol. Biol. , vol.304 , pp. 371-383
    • Van Buuren, B.N.1    Overmars, F.J.2    Ippel, J.H.3    Altona, C.4    Wijmenga, S.S.5
  • 31
    • 0022871002 scopus 로고
    • A dominant influence of flanking sequences on a local structural transition in DNA
    • Sullivan K.M., Lilley D.M. A dominant influence of flanking sequences on a local structural transition in DNA. Cell. 47:1986;817-827.
    • (1986) Cell , vol.47 , pp. 817-827
    • Sullivan, K.M.1    Lilley, D.M.2
  • 32
    • 0026703204 scopus 로고
    • GC-rich flanking tracts decrease the kinetics of intramolecular DNA triplex formation
    • Kang S., Wohlrab F., Wells R.D. GC-rich flanking tracts decrease the kinetics of intramolecular DNA triplex formation. J. Biol. Chem. 267:1992;19435-19442.
    • (1992) J. Biol. Chem. , vol.267 , pp. 19435-19442
    • Kang, S.1    Wohlrab, F.2    Wells, R.D.3
  • 33
    • 0022580389 scopus 로고
    • Mismatches in DNA double strands: Thermodynamic parameters and their correlation to repair efficiencies
    • Werntges H., Steger G., Riesner D., Fritz H.J. Mismatches in DNA double strands: thermodynamic parameters and their correlation to repair efficiencies. Nucl. Acids Res. 14:1986;3773-3790.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 3773-3790
    • Werntges, H.1    Steger, G.2    Riesner, D.3    Fritz, H.J.4
  • 34
    • 0023054131 scopus 로고
    • Structures of mismatched base pairs in DNA and their recognition by the Escherichia coli mismatch repair system
    • Fazakerley G.V., Quignard E., Woisard A., Guschlbauer W., van der Marel G.A., van Boom J.H., et al. Structures of mismatched base pairs in DNA and their recognition by the Escherichia coli mismatch repair system. EMBO J. 5:1986;3697-3703.
    • (1986) EMBO J. , vol.5 , pp. 3697-3703
    • Fazakerley, G.V.1    Quignard, E.2    Woisard, A.3    Guschlbauer, W.4    Van der Marel, G.A.5    Van Boom, J.H.6
  • 35
    • 0023008661 scopus 로고
    • Structural features and hydration of d(C-G-C-G-A-A-T-T-A-G-C-G); A double helix containing two G·A mispairs
    • Hunter W.N., Brown T., Kennard O. Structural features and hydration of d(C-G-C-G-A-A-T-T-A-G-C-G); a double helix containing two G·A mispairs. J. Biomol. Struct. Dynam. 4:1986;173-191.
    • (1986) J. Biomol. Struct. Dynam. , vol.4 , pp. 173-191
    • Hunter, W.N.1    Brown, T.2    Kennard, O.3
  • 36
    • 0029936463 scopus 로고    scopus 로고
    • Enhancement of oxidative cleavage of DNA by the binding sites of two anti-double-stranded DNA antibodies
    • Kubota T., Watanabe N., Kanai Y., Stollar B.D. Enhancement of oxidative cleavage of DNA by the binding sites of two anti-double-stranded DNA antibodies. J. Biol. Chem. 271:1996;6555-6561.
    • (1996) J. Biol. Chem. , vol.271 , pp. 6555-6561
    • Kubota, T.1    Watanabe, N.2    Kanai, Y.3    Stollar, B.D.4
  • 39
    • 0029825332 scopus 로고    scopus 로고
    • Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro
    • Paull T.T., Carey M., Johnson R.C. Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro. Genes Dev. 10:1996;2769-2781.
    • (1996) Genes Dev. , vol.10 , pp. 2769-2781
    • Paull, T.T.1    Carey, M.2    Johnson, R.C.3
  • 40
    • 0021984352 scopus 로고
    • Left-handed DNA and the synaptic pairing reaction promoted by Ustilago rec1 protein
    • Kmiec E.B., Angelides K.J., Holloman W.K. Left-handed DNA and the synaptic pairing reaction promoted by Ustilago rec1 protein. Cell. 40:1985;139-145.
    • (1985) Cell , vol.40 , pp. 139-145
    • Kmiec, E.B.1    Angelides, K.J.2    Holloman, W.K.3
  • 41
    • 0023673236 scopus 로고
    • Identification of homologous pairing and strand-exchange activity from a human tumor cell line based on Z-DNA affinity chromatography
    • Fishel R.A., Detmer K., Rich A. Identification of homologous pairing and strand-exchange activity from a human tumor cell line based on Z-DNA affinity chromatography. Proc. Natl Acad. Sci. USA. 85:1988;36-40.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 36-40
    • Fishel, R.A.1    Detmer, K.2    Rich, A.3
  • 42
    • 0029762817 scopus 로고    scopus 로고
    • Inverted repeats, stem-loops, and cruciforms: Significance for initiation of DNA replication
    • Pearson C.E., Zorbas H., Price G.B., Zannis-Hadjopoulos M. Inverted repeats, stem-loops, and cruciforms: significance for initiation of DNA replication. J. Cell. Biochem. 63:1996;1-22.
    • (1996) J. Cell. Biochem. , vol.63 , pp. 1-22
    • Pearson, C.E.1    Zorbas, H.2    Price, G.B.3    Zannis-Hadjopoulos, M.4


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