Role of supersecondary structural elements in protein G folding

Journal of Chemical Physics

Volumn 119, Issue 9, 2003, Pages 4940-4944

  Derreumaux, Philippe ^a  

^a CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; COMPOSITION EFFECTS; COMPUTER SIMULATION; CONFORMATIONS; HYDROPHOBICITY; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; MOLECULAR STRUCTURE; MONTE CARLO METHODS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; THERMAL EFFECTS;

CLUSTER ANALYSIS; PROTEIN FOLDING MECHANISMS; SUPERSECONDARY STRUCTURAL ELEMENTS;

PROTEINS;

EID: 0141676022     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1596891     Document Type: Article

References (30)

1. L. Mirny and E. Shakhnovich, Annu. Rev. Biophys. Biomol. Struct. 30, 361 (2001).
2. S. B. Ozkan, I. Bahar, and K. A. Dill, Nat. Struct. Biol. 8, 765 (2001).
3. K. W. Plaxco, K. T. Simons, and D. Baker, J. Mol. Biol. 277, 985 (1998)
4. E. J. Miller, K. F. Fischer, and S. Marqusee, Proc. Natl. Acad. Sci. U.S.A. 99, 10359 (2002).
5. Y. Duan and P. A. Kollman, Science 282, 740 (1998).
6. B. Zagrovic, E. J. Sorin, and V. Pande, J. Mol. Biol. 313, 151 (2001).
7. A. R. Fersht, Proc. Natl. Acad. Sci. U.S.A. 99, 14122 (2002).
8. Y. Zhou and A. Linhananta, Proteins 47, 154 (2002).
9. J. Shimada and E. Shakhnovich, Proc. Natl. Acad. Sci. U.S.A. 99, 11175 (2002).
10. E. Paci, M. Vendruscolo, and M. Karplus, Proteins 47, 379 (2002).
11. C. L. Brooks III, Acc. Chem. Res. 35, 447 (2002).
12. N. A. Alves and U. H. E. Hansmann, J. Chem. Phys. 117, 2337 (2002).
13. A. Maritan, C. Micheletti, and J. R. Banavar, Phys. Rev. Lett. 84, 3009 (2000).
14. T. Gallagher, P. Alexander, P. Bryan, and G. L. Gilliland, Biochemistry 33, 4721 (1994).
15. F. J. Blanco and L. Serrano, Eur. J. Biochem. 230, 634 (1995).
16. D. Roccatano, A. Amadei, A. Di Nola, and H. J. Berendsen, Protein Sci. 8, 2130 (1999).
17. R. Zhou, R. J. Berne, and R. Germain, Proc. Natl. Acad. Sci. U.S.A. 98, 14931 (2001).
18. D. K. Klimov and D. Thirumalai, Proc. Natl. Acad. Sci. U.S.A. 97, 2544 (2000).
19. A. Kolinski, B. Ilkowski, and J. Skolnick, Biophys. J. 77, 2942 (1999).
20. P. Derreumaux, J. Chem. Phys. 117, 3499 (2002).
21. E. L. McCallister, E. Alm, and D. Baker, Nat. Struct. Biol. 7, 669 (2000).
22. P. Derreumaux, Phys. Rev. Lett. 85, 206 (2000).
23. F. Forcellino and P. Derreumaux, Proteins 45, 159 (2001).
24. P. Derreumaux, J. Chem. Phys. 111, 2301 (1999).
25. H. J. C. Berendsen, D. van der Spoel, and R. van Drunen, Comput. Phys. Commun. 91, 43 (1995).
26. W. Kabsch and C. Sander, Biopolymers 22, 2577 (1983).
27. R. L. Baldwin and G. D. Rose, Trends Biochem. Sci. 24, 77 (1999).
28. D. Cregut and L. Serrano, Protein Sci. 8, 271 (1999).
29. S. H. Park, K. T. O'Neal, and H. Roder, Biochemistry 36, 14277 (1997).
30. R. Koradi, M. Billeter, and K. Wuthrich, Biom. J. 14, 51 (1996).