-
1
-
-
0004161838
-
-
New York: Cambridge University Press
-
Press WH, Teukolsky SA, Vetterling WT, Flannery BP. Numerical recipes in C, 2nd ed. New York: Cambridge University Press; 1992. p 420-430.
-
(1992)
Numerical Recipes in C, 2nd Ed.
, pp. 420-430
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
2
-
-
0023430366
-
Monte Carlo-minimization approach to the multiple-minima problem in protein folding
-
Li Z, Scheraga HA. Monte Carlo-minimization approach to the multiple-minima problem in protein folding. Proc Natl Acad Sci USA 1987;84:6611-6615.
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 6611-6615
-
-
Li, Z.1
Scheraga, H.A.2
-
3
-
-
0031000510
-
Direct measurement of angles between bond vectors in high-resolution NMR
-
Reif B, Hennig M, Griesinger C. Direct measurement of angles between bond vectors in high-resolution NMR. Science 1997;276: 1230-1233.
-
(1997)
Science
, vol.276
, pp. 1230-1233
-
-
Reif, B.1
Hennig, M.2
Griesinger, C.3
-
4
-
-
0034916650
-
Cross-correlated relaxation for measurement of angles between tensorial interactions
-
Schwalbe H, Carlomagno T, Hennig M, Junker J, Reif B, Richter C, Griesinger C. Cross-correlated relaxation for measurement of angles between tensorial interactions. Methods Enzymol 2001;338: 35-81.
-
(2001)
Methods Enzymol
, vol.338
, pp. 35-81
-
-
Schwalbe, H.1
Carlomagno, T.2
Hennig, M.3
Junker, J.4
Reif, B.5
Richter, C.6
Griesinger, C.7
-
5
-
-
0029050883
-
Nuclear magnetic dipole interactions in field-oriented proteins: Information for structure determination in solution
-
Tolman JR, Flanagan JM, Kennedy MA, Prestegard JH. Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution. Proc Natl Acad Sci USA 1995;92:9279-9283.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 9279-9283
-
-
Tolman, J.R.1
Flanagan, J.M.2
Kennedy, M.A.3
Prestegard, J.H.4
-
6
-
-
0034480326
-
NMR structures of biomolecules using field oriented media and residual dipolar couplings
-
Prestegard JH, Al-Hashimi HM, Tolman JR. NMR structures of biomolecules using field oriented media and residual dipolar couplings. Quart Rev Biophys 2000;33:371-424.
-
(2000)
Quart Rev Biophys
, vol.33
, pp. 371-424
-
-
Prestegard, J.H.1
Al-Hashimi, H.M.2
Tolman, J.R.3
-
7
-
-
0034919243
-
Dipolar couplings in macromolecular structure determination
-
Bax A, Kontaxis G, Tjandra N. Dipolar couplings in macromolecular structure determination. Methods Enzymol 2001;339:127-174.
-
(2001)
Methods Enzymol
, vol.339
, pp. 127-174
-
-
Bax, A.1
Kontaxis, G.2
Tjandra, N.3
-
8
-
-
0021586472
-
Rapid calculation of 1st and 2nd derivatives of conformational energy with respect to dihedral angles for proteins-general recurrent equations
-
Abe H, Braun W, Noguti T, Go N. Rapid calculation of 1st and 2nd derivatives of conformational energy with respect to dihedral angles for proteins-general recurrent equations. Comput Chem 1984;8:239-247.
-
(1984)
Comput Chem
, vol.8
, pp. 239-247
-
-
Abe, H.1
Braun, W.2
Noguti, T.3
Go, N.4
-
9
-
-
0022336792
-
Calculation of protein conformations by proton proton distance constraints - A new efficient algorithm
-
Braun W, Gō N. Calculation of protein conformations by proton proton distance constraints-a new efficient algorithm. J Mol Biol 1985;186:611-626.
-
(1985)
J Mol Biol
, vol.186
, pp. 611-626
-
-
Braun, W.1
Go, N.2
-
11
-
-
0034004003
-
A new approach for applying residual dipolar couplings as restraints in structure elucidation
-
Meiler J, Blomberg N, Nilges M, Griesinger C. A new approach for applying residual dipolar couplings as restraints in structure elucidation. J Biomol NMR 2000;16:245-252.
-
(2000)
J Biomol NMR
, vol.16
, pp. 245-252
-
-
Meiler, J.1
Blomberg, N.2
Nilges, M.3
Griesinger, C.4
-
12
-
-
0033636451
-
Assessment of molecular structure using frame-independent orientational restraints derived from residual dipolar couplings
-
Skrynnikov NR, Kay LE. Assessment of molecular structure using frame-independent orientational restraints derived from residual dipolar couplings. J Biomol NMR 2000;18:239-252.
-
(2000)
J Biomol NMR
, vol.18
, pp. 239-252
-
-
Skrynnikov, N.R.1
Kay, L.E.2
-
13
-
-
0001838028
-
The hydrogen bond
-
Hadži D, editor. New York: Pergamon Press
-
Coulson CA. The hydrogen bond. In: Hadži D, editor. Hydrogen bonding. New York: Pergamon Press; 1959. p 339-360.
-
(1959)
Hydrogen Bonding
, pp. 339-360
-
-
Coulson, C.A.1
-
14
-
-
0006483132
-
Van der Waals interaction and the stability ofhelical polypeptide chains
-
de Santis P, Giglio E, Liquori AM, Ripamonti A. van der Waals interaction and the stability ofhelical polypeptide chains. Nature 1965;206:456-458.
-
(1965)
Nature
, vol.206
, pp. 456-458
-
-
De Santis, P.1
Giglio, E.2
Liquori, A.M.3
Ripamonti, A.4
-
15
-
-
0032929780
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
-
Simons KT, Ruczinski I, Kooperberg C, Fox BA, Bystroff C, Baker D. Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins 1999;34:82-95.
-
(1999)
Proteins
, vol.34
, pp. 82-95
-
-
Simons, K.T.1
Ruczinski, I.2
Kooperberg, C.3
Fox, B.A.4
Bystroff, C.5
Baker, D.6
-
17
-
-
84953654693
-
Moments and distribution functions for polymer chains of finite length. I. Theory
-
Flory PJ, Yoon DY. Moments and distribution functions for polymer chains of finite length. I. Theory. J Chem Phys 1974;61: 5358-5365.
-
(1974)
J Chem Phys
, vol.61
, pp. 5358-5365
-
-
Flory, P.J.1
Yoon, D.Y.2
-
18
-
-
0036180645
-
Exact solutions for chemical bond orientations from residual dipolar couplings
-
Wedemeyer WJ, Rohl CA, Scheraga HA. Exact solutions for chemical bond orientations from residual dipolar couplings. J Biomol NMR 2002;22:137-151.
-
(2002)
J Biomol NMR
, vol.22
, pp. 137-151
-
-
Wedemeyer, W.J.1
Rohl, C.A.2
Scheraga, H.A.3
-
20
-
-
0033620446
-
Identification of the hydrogen bonding network in a protein by scalar couplings
-
Cornilescu G, Hu JS, Bax A. Identification of the hydrogen bonding network in a protein by scalar couplings. J Am Chem Soc 1999;121:2949-2950.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 2949-2950
-
-
Cornilescu, G.1
Hu, J.S.2
Bax, A.3
-
22
-
-
0015920746
-
Stagewise mechanism of self-organization of protein molecules
-
Ptitsyn OB. Stagewise mechanism of self-organization of protein molecules. Dokl Akad Nauk SSSR 1973;210:1213-1215.
-
(1973)
Dokl Akad Nauk SSSR
, vol.210
, pp. 1213-1215
-
-
Ptitsyn, O.B.1
-
23
-
-
0016610491
-
Computer simulation of protein folding
-
Levitt M, Warshel A. Computer simulation of protein folding. Nature 1975;253:694-698.
-
(1975)
Nature
, vol.253
, pp. 694-698
-
-
Levitt, M.1
Warshel, A.2
-
26
-
-
0002504475
-
Nuclear magnetic resonance: Structure of the amino group. II
-
Moulton WG, Kromhout RA. Nuclear magnetic resonance: structure of the amino group. II. J Chem Phys 1956;25:34-37.
-
(1956)
J Chem Phys
, vol.25
, pp. 34-37
-
-
Moulton, W.G.1
Kromhout, R.A.2
-
27
-
-
0002507170
-
Potential function model of hydrogen bonds. II
-
Schroeder R, Lippincott ER. Potential function model of hydrogen bonds. II. J Phys Chem 1957;61:921-928.
-
(1957)
J Phys Chem
, vol.61
, pp. 921-928
-
-
Schroeder, R.1
Lippincott, E.R.2
-
28
-
-
0141821477
-
Conformational analysis of macromolecules. III. Helical structures of polyglycine and poly-L-alanine
-
Scott RA, Scheraga HA. Conformational analysis of macromolecules. III. Helical structures of polyglycine and poly-L-alanine. J Chem Phys 1966;45:2091-2101.
-
(1966)
J Chem Phys
, vol.45
, pp. 2091-2101
-
-
Scott, R.A.1
Scheraga, H.A.2
-
29
-
-
0014098265
-
Conformational analysis of macromolecules. IV. Helical structures of poly-L-alanine, poly-L-valine, poly-β-methyl-L-aspartate, poly-γ-methyl-L-glutamate, and poly-L-tyrosine
-
Ooi T, Scott RA, Vanderkooi G, Scheraga HA. Conformational analysis of macromolecules. IV. Helical structures of poly-L-alanine, poly-L-valine, poly-β-methyl-L-aspartate, poly-γ-methyl-L-glutamate, and poly-L-tyrosine. J Chem Phys 1967;46:4410-4426.
-
(1967)
J Chem Phys
, vol.46
, pp. 4410-4426
-
-
Ooi, T.1
Scott, R.A.2
Vanderkooi, G.3
Scheraga, H.A.4
-
30
-
-
0016399124
-
Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from amide crystals
-
Hagler AT, Huler E, Lifson S. Energy functions for peptides and proteins. I. Derivation of a consistent force field including the hydrogen bond from amide crystals. J Am Chem Soc 1974;96:5319-5327.
-
(1974)
J Am Chem Soc
, vol.96
, pp. 5319-5327
-
-
Hagler, A.T.1
Huler, E.2
Lifson, S.3
-
31
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks BR, Bruccoleri RE, Olafson BD, States DJ, Swaminathan S, Karplus M. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J Comput Chem 1983;4: 187-217.
-
(1983)
J Comput Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
32
-
-
9144240095
-
DREIDING a generic force field for molecular simulations
-
Mayo SL, Olafson BD, Goddard WA III. DREIDING: a generic force field for molecular simulations. J Phys Chem 1990;94:8897-8909.
-
(1990)
J Phys Chem
, vol.94
, pp. 8897-8909
-
-
Mayo, S.L.1
Olafson, B.D.2
Goddard W.A. III3
-
34
-
-
0036100338
-
An improved hydrogen bond potential: Impact on medium resolution protein structures
-
Fabiola F, Bertram R, Korostelev A, Chapman MS. An improved hydrogen bond potential: impact on medium resolution protein structures. Protein Sci 2002;11:1415-1423.
-
(2002)
Protein Sci
, vol.11
, pp. 1415-1423
-
-
Fabiola, F.1
Bertram, R.2
Korostelev, A.3
Chapman, M.S.4
-
35
-
-
0037019550
-
Hydrogen bonding in high-resolution protein structures: A new method to assess NMR protein geometry
-
Lipsitz RS, Sharma Y, Brooks BR, Tjandra N. Hydrogen bonding in high-resolution protein structures: a new method to assess NMR protein geometry. J Am Chem Soc 2002;124:10621-10626.
-
(2002)
J Am Chem Soc
, vol.124
, pp. 10621-10626
-
-
Lipsitz, R.S.1
Sharma, Y.2
Brooks, B.R.3
Tjandra, N.4
-
36
-
-
0037470581
-
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
-
Kortemme T, Morozov AV, Baker D. An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. J Mol Biol 2003;326:1239-1259.
-
(2003)
J Mol Biol
, vol.326
, pp. 1239-1259
-
-
Kortemme, T.1
Morozov, A.V.2
Baker, D.3
-
38
-
-
0033145058
-
Order matrix analysis of residual dipolar couplings using singular value decomposition
-
Losonczi JA, Andrec M, Fischer MWF, Prestegard JH. Order matrix analysis of residual dipolar couplings using singular value decomposition. J Magn Reson 1999;138:334-342.
-
(1999)
J Magn Reson
, vol.138
, pp. 334-342
-
-
Losonczi, J.A.1
Andrec, M.2
Fischer, M.W.F.3
Prestegard, J.H.4
-
40
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi R, Billeter M, Wüthrich K. MOLMOL: a program for display and analysis of macromolecular structures. J Mol Graphics 1996;14:51-55.
-
(1996)
J Mol Graphics
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
42
-
-
0015492519
-
Energy parameters in polypeptides. V. An empirical hydrogen bond potential function based on molecular orbital calculations
-
McGuire RF, Momany FA, Scheraga HA. Energy parameters in polypeptides. V. An empirical hydrogen bond potential function based on molecular orbital calculations. J Phys Chem 1972;76:375-393.
-
(1972)
J Phys Chem
, vol.76
, pp. 375-393
-
-
McGuire, R.F.1
Momany, F.A.2
Scheraga, H.A.3
|