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Volumn 11, Issue 6, 2002, Pages 1415-1423

An improved hydrogen bond potential: Impact on medium resolution protein structures

Author keywords

Crystallography; Force field; Hydrogen bond restraint; Hydrogen bonds

Indexed keywords

CARBONYL DERIVATIVE; HYDROGEN; PROTEIN;

EID: 0036100338     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.4890102     Document Type: Article
Times cited : (105)

References (58)
  • 4
    • 0027988211 scopus 로고
    • The role of side-chain hydrogen bonds in the formation and stabilization of secondary structure in soluble proteins
    • (1994) J. Mol. Biol. , vol.243 , pp. 504-519
    • Bordo, D.1    Argos, P.2
  • 8
    • 0026597444 scopus 로고
    • Free R value: A novel statistical quantity for assessing the accuracy of crystal structures
    • (1992) Nature , vol.355 , pp. 472-475
  • 9
    • 0030767713 scopus 로고    scopus 로고
    • The free R value: A more objective statistic for crystallography
    • (1997) Meth. Enzymol. , vol.277 , pp. 366-396
  • 21
    • 0000809197 scopus 로고
    • Hydrogen-bond distances and angles in the structures of amino acids and peptides
    • (1989) Acta Cryst. B , vol.45 , pp. 390-395
    • Gorbitz, C.H.1
  • 23
    • 6344256147 scopus 로고
    • Consistent force field studies of intermolecular forces in hydrogen bonded crystals, II: A benchmark for the objective comparison of alternative force fields
    • (1979) J. Am. Chem. Soc. , vol.101 , pp. 5122-5130
    • Hagler, A.T.1    Lifson, S.2    Dauber, P.3
  • 30
    • 0000562754 scopus 로고
    • The OPLS (optimized potential for liquid simulations) potential functions for proteins, energy minimization for crystals of cyclic peptides and crambin
    • (1988) J. Am. Chem. Soc. , vol.110 , pp. 657-666
    • Jorgensen, W.L.1    Rives, J.T.2
  • 31
    • 4243867857 scopus 로고
    • The prediction and analysis of mutant structures
    • (eds. D.L. Oxender and C.F. Fox). Alan R. Liss, New York, NY
    • (1987) Protein engineering , pp. 35-44
    • Karplus, M.1
  • 34
    • 0039139534 scopus 로고
    • Born-Oppenheimer energy surfaces of similar molecules: Interrelations between bond lengths, bond angles, and frequencies of normal vibrations in alkanes
    • (1982) J. Comput. Phys. , vol.77 , pp. 4542-4550
    • Lifson, S.1    Stern, P.2
  • 45
    • 33845550595 scopus 로고
    • Energy parameters in polypeptides, 9: Updating of geometric parameters, nonbonded interactions and hydrogen bond interactions for the naturally occurring amino acids
    • (1983) J. Phys. Chem. , vol.87 , pp. 1883-1887
    • Nemethy, G.1    Potle, M.S.2    Scheraga, H.A.3
  • 53
    • 0032128272 scopus 로고    scopus 로고
    • Rfree and the rfree ratio, I: Derivation of expected values of cross-validation residuals used in macromolecular least-squares refinement
    • (1998) Acta Cryst. D , vol.54 , pp. 547-557


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.