-
1
-
-
0031278019
-
Perspectives in antisense therapeutics
-
Agrawal, S., and R. P. Iyer. 1997. Perspectives in antisense therapeutics. Pharmacol. Ther. 76:151-160.
-
(1997)
Pharmacol. Ther.
, vol.76
, pp. 151-160
-
-
Agrawal, S.1
Iyer, R.P.2
-
2
-
-
0029791763
-
Second-generation antisense oligonucleotides: Structure-activity relationships and the design of improved signal-transduction inhibitors
-
Altmann, K.-H., D. Fabbrot, N. M. Dean, T. Geigert, B. P. Monia, M. Müller, and P. Nicklin. 1997. Second-generation antisense oligonucleotides: structure-activity relationships and the design of improved signal-transduction inhibitors. Biochem. Soc. Trans. 24:630-637.
-
(1997)
Biochem. Soc. Trans.
, vol.24
, pp. 630-637
-
-
Altmann, K.-H.1
Fabbrot, D.2
Dean, N.M.3
Geigert, T.4
Monia, B.P.5
Müller, M.6
Nicklin, P.7
-
3
-
-
0034501041
-
Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: A molecular dynamics study using time-averaged restraints
-
Aramini, J. M., A. Mujeeb, N. B. Ulyanov, and M. W. Germann. 2000. Conformational dynamics in mixed alpha/beta-oligonucleotides containing polarity reversals: a molecular dynamics study using time-averaged restraints. J. Biomol. NMR. 18:287-302.
-
(2000)
J. Biomol. NMR
, vol.18
, pp. 287-302
-
-
Aramini, J.M.1
Mujeeb, A.2
Ulyanov, N.B.3
Germann, M.W.4
-
4
-
-
33750587438
-
Molecular dynamics with coupling to an external bath
-
Berendsen, H. J. C., J. P. M. Postma, W. F. van Gunsteren, A. Di Nola, and J. R. Haak. 1984. Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81:3684-3690.
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Di Nola, A.4
Haak, J.R.5
-
5
-
-
0029022355
-
Conformational variability of solution nuclear magnetic resonance structures
-
Bonvin, A. M. J. J., and A. T. Brünger. 1995. Conformational variability of solution nuclear magnetic resonance structures. J. Mol. Biol. 250:80-93.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 80-93
-
-
Bonvin, A.M.J.J.1
Brünger, A.T.2
-
6
-
-
0000425457
-
MARDIGRAS - Procedure for matrix analysis of relaxation for discerning geometry of an aqueous structure
-
Borgias, B. A., and T. L. James. 1990. MARDIGRAS - procedure for matrix analysis of relaxation for discerning geometry of an aqueous structure. J. Magn. Reson. 87:475-487.
-
(1990)
J. Magn. Reson.
, vol.87
, pp. 475-487
-
-
Borgias, B.A.1
James, T.L.2
-
7
-
-
0021763144
-
Complete assignment of the non-exchangeable proton NMR resonances of [d-(GGAATTCC)]2 using two-dimensional nuclear Overhauser effect spectra
-
Broido, M. S., G. Zon, and T. L. James. 1984. Complete assignment of the non-exchangeable proton NMR resonances of [d-(GGAATTCC)]2 using two-dimensional nuclear Overhauser effect spectra. Biochem. Biophys. Res. Commun. 119:663-670.
-
(1984)
Biochem. Biophys. Res. Commun.
, vol.119
, pp. 663-670
-
-
Broido, M.S.1
Zon, G.2
James, T.L.3
-
8
-
-
0003712431
-
-
University of California, San Francisco
-
Case, D. A., D. A. Pearlman, J. W. Caldwell, I. T. E. Cheatham, W. S. Ross, C. Simmerling, T. Darden, K. M. Merz, R. V. Stanton, A. Chen, J. J. Vincent, M. Crowley, V. Tsui, R. Radmer, Y. Duan, J. Pitera, I. Massova, and P. A. Kollman. 2000. Amber 6.0. University of California, San Francisco.
-
(2000)
Amber 6.0
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham, I.T.E.4
Ross, W.S.5
Simmerling, C.6
Darden, T.7
Merz, K.M.8
Stanton, R.V.9
Chen, A.10
Vincent, J.J.11
Crowley, M.12
Tsui, V.13
Radmer, R.14
Duan, Y.15
Pitera, J.16
Massova, I.17
Kollman, P.A.18
-
10
-
-
0030000245
-
Progress in antisense oligonucleotide therapeutics
-
Crooke, S. T., and C. F. Bennett. 1996. Progress in antisense oligonucleotide therapeutics. Annu. Rev. Pharmacol. Toxicol. 36:107-129.
-
(1996)
Annu. Rev. Pharmacol. Toxicol.
, vol.36
, pp. 107-129
-
-
Crooke, S.T.1
Bennett, C.F.2
-
11
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer, and A. Bax. 1995. NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR. 6:277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
12
-
-
0030943935
-
Comparative pharmacokinetics, tissue distribution, and tumor accumulation of phosphorothioate, phosphorodithioate, and methylphosphonate oligonucleotides in nude mice
-
DeLong, R. K., A. Nolting, M. Fisher, Q. Chen, E. Wickstrom, M. Kligshteyn, S. Demirdji, M. Caruthers, and R. L. Juliano. 1997. Comparative pharmacokinetics, tissue distribution, and tumor accumulation of phosphorothioate, phosphorodithioate, and methylphosphonate oligonucleotides in nude mice. Antisense Nucleic Acid Drug Dev. 7:71-77.
-
(1997)
Antisense Nucleic Acid Drug Dev.
, vol.7
, pp. 71-77
-
-
DeLong, R.K.1
Nolting, A.2
Fisher, M.3
Chen, Q.4
Wickstrom, E.5
Kligshteyn, M.6
Demirdji, S.7
Caruthers, M.8
Juliano, R.L.9
-
13
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essmann, U., L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
14
-
-
0031556022
-
Solution structure of r(gaggacug):d(CAGTCCTC) hybrid: Implications for the initiation of HIV-1 (+)-strand synthesis
-
Fedoroff, O. Y., Y. Ge, and B. R. Reid. 1997. Solution structure of r(gaggacug):d(CAGTCCTC) hybrid: implications for the initiation of HIV-1 (+)-strand synthesis. J. Mol. Biol. 269:225-239.
-
(1997)
J. Mol. Biol.
, vol.269
, pp. 225-239
-
-
Fedoroff, O.Y.1
Ge, Y.2
Reid, B.R.3
-
15
-
-
0029365350
-
Structure refinement with molecular dynamics and a Boltzmann-weighted ensemble
-
Fennen, J., A. E. Torda, and W. F. v. Gunsteren. 1995. Structure refinement with molecular dynamics and a Boltzmann-weighted ensemble. J. Biomol. NMR. 6:163-170.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 163-170
-
-
Fennen, J.1
Torda, A.E.2
Gunsteren, W.F.V.3
-
16
-
-
0023977089
-
The MIDAS display system
-
Ferrin, T. E., C. C. Huang, L. E. Jarvis, and R. Langridge. 1988. The MIDAS display system. J. Mol. Graph. 6:13-27.
-
(1988)
J. Mol. Graph.
, vol.6
, pp. 13-27
-
-
Ferrin, T.E.1
Huang, C.C.2
Jarvis, L.E.3
Langridge, R.4
-
17
-
-
0030727765
-
The ups and downs of nucleic acid duplex stability: Structure-stability studies on chemically-modified DNA:RNA duplexes
-
Freier, S. M., and K. H. Altmann. 1997. The ups and downs of nucleic acid duplex stability: structure-stability studies on chemically-modified DNA:RNA duplexes. Nucleic Acids Res. 25:4429-4443.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4429-4443
-
-
Freier, S.M.1
Altmann, K.H.2
-
18
-
-
0033613999
-
Structural effect of complete Rp phosphorothioate and phosphorodithioate substitutions in the DNA strand of a model antisense inhibitor-target RNA complex
-
Furrer, P., T. M. Billeci, A. Donati, C. Kojima, B. Karwowski, A. Sierzchala, W. Stec, and T. L. James. 1999. Structural effect of complete Rp phosphorothioate and phosphorodithioate substitutions in the DNA strand of a model antisense inhibitor-target RNA complex. J. Mol. Biol. 285:1609-1622.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1609-1622
-
-
Furrer, P.1
Billeci, T.M.2
Donati, A.3
Kojima, C.4
Karwowski, B.5
Sierzchala, A.6
Stec, W.7
James, T.L.8
-
19
-
-
0003784346
-
-
University of California, San Francisco
-
Goddard, T. D., and D. G. Kneller. 1998. SPARKY 3.0. University of California, San Francisco.
-
(1998)
SPARKY 3.0
-
-
Goddard, T.D.1
Kneller, D.G.2
-
20
-
-
0027990236
-
Structural study of a DNA-RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: Extraction of distance and torsion angle constraints and imino proton exchange rates
-
Gonzàlez, C., W. Stec, A. Kobylanska, R. Hogrefe, M. Reynolds, and T. L. James. 1994. Structural study of a DNA-RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: extraction of distance and torsion angle constraints and imino proton exchange rates. Biochemistry. 33:11062-11072.
-
(1994)
Biochemistry
, vol.33
, pp. 11062-11072
-
-
Gonzàlez, C.1
Stec, W.2
Kobylanska, A.3
Hogrefe, R.4
Reynolds, M.5
James, T.L.6
-
21
-
-
0028921962
-
Structure and dynamics of a DNA-RNA hybrid duplex with a chiral phosphorothioate moiety. NMR and molecular dynamics with conventional and time-averaged restraints
-
Gonzàlez, C., W. Stec, M. Reynolds, and T. L. James. 1995. Structure and dynamics of a DNA-RNA hybrid duplex with a chiral phosphorothioate moiety. NMR and molecular dynamics with conventional and time-averaged restraints. Biochemistry. 34:4969-4982.
-
(1995)
Biochemistry
, vol.34
, pp. 4969-4982
-
-
Gonzàlez, C.1
Stec, W.2
Reynolds, M.3
James, T.L.4
-
22
-
-
0343550557
-
Determination of the populations and structures of multiple conformers in an ensemble from NMR data: Multiple-copy refinement of nucleic acid structures using floating weights
-
Görler, A., N. B. Ulyanov, and T. L. James. 2000. Determination of the populations and structures of multiple conformers in an ensemble from NMR data: multiple-copy refinement of nucleic acid structures using floating weights. J. Biomol. NMR. 16:147-164.
-
(2000)
J. Biomol. NMR
, vol.16
, pp. 147-164
-
-
Görler, A.1
Ulyanov, N.B.2
James, T.L.3
-
23
-
-
0032488608
-
Solution structures of DNA-RNA hybrids with purine-rich and pyrimidine-rich strands: Comparison with the homologous DNA and RNA duplexes
-
Gyi, J. I., A. N. Lane, G. L. Conn, and T. Brown. 1998. Solution structures of DNA-RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexes. Biochemistry. 37:73-80.
-
(1998)
Biochemistry
, vol.37
, pp. 73-80
-
-
Gyi, J.I.1
Lane, A.N.2
Conn, G.L.3
Brown, T.4
-
24
-
-
0000577528
-
Chimera: An extensible molecular modeling application constructed using standard components
-
Huang, C. C., G. S. Couch, E. F. Pettersen, and T. E. Ferrin. 1996. Chimera: an extensible molecular modeling application constructed using standard components. Pac. Symp. Biocomp. 1:724.
-
(1996)
Pac. Symp. Biocomp.
, vol.1
, pp. 724
-
-
Huang, C.C.1
Couch, G.S.2
Pettersen, E.F.3
Ferrin, T.E.4
-
25
-
-
0028866812
-
Solution structure of the CUUG hairpin loop: A novel RNA tetraloop motif
-
Jucker, F. M., and A. Pardi. 1995. Solution structure of the CUUG hairpin loop: a novel RNA tetraloop motif. Biochemistry. 34:14416-14427.
-
(1995)
Biochemistry
, vol.34
, pp. 14416-14427
-
-
Jucker, F.M.1
Pardi, A.2
-
26
-
-
0001053688
-
A theoretical study of distance determinations from NMR. Two-dimensional nuclear Overhauser effect spectra
-
Keepers, J. W., and T. L. James. 1984. A theoretical study of distance determinations from NMR. Two-dimensional nuclear Overhauser effect spectra. J. Magn. Reson. 57:404-426.
-
(1984)
J. Magn. Reson.
, vol.57
, pp. 404-426
-
-
Keepers, J.W.1
James, T.L.2
-
27
-
-
0029334378
-
Dynamic modelling of a helical peptide in solution using NMR data: Multiple conformations and multispin effects
-
Kemmink, J., and R. M. Scheek. 1995. Dynamic modelling of a helical peptide in solution using NMR data: multiple conformations and multispin effects. J. Biomol. NMR. 5:33-40.
-
(1995)
J. Biomol. NMR
, vol.5
, pp. 33-40
-
-
Kemmink, J.1
Scheek, R.M.2
-
29
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
Koradi, R., M. Billeter, and K. Wüthrich. 1996. MOLMOL: a program for display and analysis of macromolecular structures. J. Mol. Graph. 14:29-32.
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 29-32
-
-
Koradi, R.1
Billeter, M.2
Wüthrich, K.3
-
30
-
-
0037011599
-
Stereochemical course of Escherichia coli RNase H
-
Krakowiak, A., A. Owczarek, M. Koziolkiewicz, and W. J. Stec. 2002. Stereochemical course of Escherichia coli RNase H. Chem. Biochem. 3:1242-1250.
-
(2002)
Chem. Biochem.
, vol.3
, pp. 1242-1250
-
-
Krakowiak, A.1
Owczarek, A.2
Koziolkiewicz, M.3
Stec, W.J.4
-
32
-
-
0031019342
-
Binding affinity and specificity of Escherichia coli RNase H1: Impact on the kinetics of catalysis of antisense oligonucleotide-RNA hybrids
-
Lima, W. F., and S. T. Crooke. 1997. Binding affinity and specificity of Escherichia coli RNase H1: impact on the kinetics of catalysis of antisense oligonucleotide-RNA hybrids. Biochemistry. 36:390-398.
-
(1997)
Biochemistry
, vol.36
, pp. 390-398
-
-
Lima, W.F.1
Crooke, S.T.2
-
33
-
-
0029450044
-
Interproton distance bounds from 2D-NOE intensities: Effect of experimental noise and peak integration errors
-
Liu, H., H. P. Spielmann, N. B. Ulyanov, D. E. Wemmer, and T. L. James. 1995. Interproton distance bounds from 2D-NOE intensities: effect of experimental noise and peak integration errors. J. Biomol. NMR. 6:390-402.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 390-402
-
-
Liu, H.1
Spielmann, H.P.2
Ulyanov, N.B.3
Wemmer, D.E.4
James, T.L.5
-
34
-
-
1642633533
-
Toxicological evaluation of oligonucleotide therapeutics
-
Marquis, J. K., and J. M. Grindel. 2000. Toxicological evaluation of oligonucleotide therapeutics. Curr. Opin. Mol. Ther. 2:258-263.
-
(2000)
Curr. Opin. Mol. Ther.
, vol.2
, pp. 258-263
-
-
Marquis, J.K.1
Grindel, J.M.2
-
35
-
-
0028804849
-
The effects of sequence context on base dynamics at TpA steps in DNA studied by NMR
-
McAteer, K., P. D. Ellis, and M. A. Kennedy. 1995. The effects of sequence context on base dynamics at TpA steps in DNA studied by NMR. Nucleic Acids Res. 23:3962-3966.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 3962-3966
-
-
McAteer, K.1
Ellis, P.D.2
Kennedy, M.A.3
-
36
-
-
0033928295
-
NMR evidence for base dynamics at all TpA steps in DNA
-
McAteer, K., and M. A. Kennedy. 2000. NMR evidence for base dynamics at all TpA steps in DNA. J. Biomol. Struct. Dyn. 17:1001-1009.
-
(2000)
J. Biomol. Struct. Dyn.
, vol.17
, pp. 1001-1009
-
-
McAteer, K.1
Kennedy, M.A.2
-
37
-
-
0033555551
-
Characterization of a potent and specific class of antisense oligonucleotide inhibitor of human protein kinase C-alpha expression
-
McKay, R. A., L. J. Miraglia, L. L. Cummins, S. R. Owens, H. Sasmor, and N. M. Dean. 1999. Characterization of a potent and specific class of antisense oligonucleotide inhibitor of human protein kinase C-alpha expression. J. Biol. Chem. 274:1715-1722.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 1715-1722
-
-
McKay, R.A.1
Miraglia, L.J.2
Cummins, L.L.3
Owens, S.R.4
Sasmor, H.5
Dean, N.M.6
-
38
-
-
0030760355
-
First- and second-generation antisense inhibitors targeted to human c-raf kinase: In vitro and in vivo studies
-
Monia, B. P. 1997. First- and second-generation antisense inhibitors targeted to human c-raf kinase: in vitro and in vivo studies. Anticancer Drug Des. 12:327-339.
-
(1997)
Anticancer Drug Des.
, vol.12
, pp. 327-339
-
-
Monia, B.P.1
-
39
-
-
0026788541
-
A potential gene target in HIV-1: Rationale, selection of a conserved sequence, and determination of NMR distance and torsion angle constraints
-
Mujeeb, A., S. M. Kerwin, W. Egan, G. L. Kenyon, and T. L. James. 1992. A potential gene target in HIV-1: rationale, selection of a conserved sequence, and determination of NMR distance and torsion angle constraints. Biochemistry. 31:9325-9338.
-
(1992)
Biochemistry
, vol.31
, pp. 9325-9338
-
-
Mujeeb, A.1
Kerwin, S.M.2
Egan, W.3
Kenyon, G.L.4
James, T.L.5
-
40
-
-
0027751258
-
Solution structure of a conserved DNA sequence from the HIV-1 genome: Restrained molecular dynamics simulation with distance and torsion angle restraints derived from 2D NMR spectra
-
Mujeeb, A., S. M. Kerwin, G. L. Kenyon, and T. L. James. 1993. Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from 2D NMR spectra. Biochemistry. 32:13419-13431.
-
(1993)
Biochemistry
, vol.32
, pp. 13419-13431
-
-
Mujeeb, A.1
Kerwin, S.M.2
Kenyon, G.L.3
James, T.L.4
-
41
-
-
0001843949
-
FINGAR: A new genetic algorithm-based method for fitting NMR data
-
Pearlman, D. A. 1996. FINGAR: a new genetic algorithm-based method for fitting NMR data. J. Biomol. NMR. 8:49-66.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 49-66
-
-
Pearlman, D.A.1
-
42
-
-
0025778738
-
Are time-averaged restraints necessary for NMR refinement? A model study for DNA
-
Pearlman, D. A., and P. A. Kollman. 1991. Are time-averaged restraints necessary for NMR refinement? A model study for DNA. J. Mol. Biol. 220:457-479.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 457-479
-
-
Pearlman, D.A.1
Kollman, P.A.2
-
43
-
-
0023111788
-
Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: A graphical analysis
-
Rinkel, L. J., and C. Altona. 1987. Conformational analysis of the deoxyribofuranose ring in DNA by means of sums of proton-proton coupling constants: a graphical analysis. J. Biomol. Struct. Dyn. 4:621-649.
-
(1987)
J. Biomol. Struct. Dyn.
, vol.4
, pp. 621-649
-
-
Rinkel, L.J.1
Altona, C.2
-
44
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J. P., G. Cicotti, and H. J. C. Berendsen. 1977. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comput. Phys. 233:327-341.
-
(1977)
J. Comput. Phys.
, vol.233
, pp. 327-341
-
-
Ryckaert, J.P.1
Cicotti, G.2
Berendsen, H.J.C.3
-
45
-
-
0035868713
-
Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA
-
Sarafianos, S. G., K. Das, C. Tantillo, A. D. Clark, Jr., J. Ding, J. M. Whitcomb, P. L. Boyer, S. H. Hughes, and E. Arnold. 2001. Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA. EMBO J. 20:1449-1461.
-
(2001)
EMBO J.
, vol.20
, pp. 1449-1461
-
-
Sarafianos, S.G.1
Das, K.2
Tantillo, C.3
Clark A.D., Jr.4
Ding, J.5
Whitcomb, J.M.6
Boyer, P.L.7
Hughes, S.H.8
Arnold, E.9
-
46
-
-
0032189738
-
Small structural ensembles for a 17-nucleotide mimic of the mRNA T psi C-loop via fitting dipolar relaxation rates with the quadratic programming algorithm
-
Schmitz, U., A. Donati, T. L. James, N. B. Ulyanov, and L. Yao. 1998. Small structural ensembles for a 17-nucleotide mimic of the mRNA T psi C-loop via fitting dipolar relaxation rates with the quadratic programming algorithm. Biopolymers. 46:329-342.
-
(1998)
Biopolymers
, vol.46
, pp. 329-342
-
-
Schmitz, U.1
Donati, A.2
James, T.L.3
Ulyanov, N.B.4
Yao, L.5
-
47
-
-
0001094253
-
Dynamic interpretation of NMR structural data: Molecular dynamics with weighted time-averaged restraints and ensemble R-factor
-
Schmitz, U., A. Kumar, and T. L. James. 1992a. Dynamic interpretation of NMR structural data: molecular dynamics with weighted time-averaged restraints and ensemble R-factor. J. Am. Chem. Soc. 114:10654-10656.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 10654-10656
-
-
Schmitz, U.1
Kumar, A.2
James, T.L.3
-
48
-
-
0026758712
-
Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from 2D NMR spectral fitting
-
Schmitz, U., I. Sethson, W. Egan, and T. L. James. 1992b. Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from 2D NMR spectral fitting. J. Mol. Biol. 227:510-531.
-
(1992)
J. Mol. Biol.
, vol.227
, pp. 510-531
-
-
Schmitz, U.1
Sethson, I.2
Egan, W.3
James, T.L.4
-
49
-
-
0027432486
-
Molecular dynamics with weighted time-averaged restraints of a DNA octamer: Dynamic interpretation of NMR data
-
Schmitz, U., N. B. Ulyanov, A. Kumar, and T. L. James. 1993. Molecular dynamics with weighted time-averaged restraints of a DNA octamer: dynamic interpretation of NMR data. J. Mol. Biol. 234:373-389.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 373-389
-
-
Schmitz, U.1
Ulyanov, N.B.2
Kumar, A.3
James, T.L.4
-
50
-
-
0025260868
-
2: Evaluation of sugar pucker by simulation of double-quantum-filtered COSY cross-peaks
-
2: evaluation of sugar pucker by simulation of double-quantum-filtered COSY cross-peaks. Biochemistry. 29:2357-2368.
-
(1990)
Biochemistry
, vol.29
, pp. 2357-2368
-
-
Schmitz, U.1
Zon, G.2
James, T.L.3
-
51
-
-
0003023614
-
MOIL-View - A program for visualization of structure and dynamics of biomolecules and STO - A program for computing stochastic paths
-
A. Pullman, editor. Academic Press, Kluwer, Netherlands
-
Simmerling, C., R. Elber, and J. Zhang. 1995. MOIL-View - a program for visualization of structure and dynamics of biomolecules and STO - a program for computing stochastic paths. In Modeling of Biomolecular Structures and Mechanisms. A. Pullman, editor. Academic Press, Kluwer, Netherlands. 241-65.
-
(1995)
Modeling of Biomolecular Structures and Mechanisms
, pp. 241-265
-
-
Simmerling, C.1
Elber, R.2
Zhang, J.3
-
52
-
-
0032578199
-
Deoxyribonucleoside 3′-O-(2-Thio- and 2-Oxo-"spiro" -4,4-pentamethylene-1,3,2-oxathiaphospholane)s: Monomers for stereocontrolled synthesis of oligo(deoxyribonucleoside phosphorothioate)s and chimeric PS/PO oligonucleotides
-
Stec, W. J., B. Karwowski, M. Boczkowska, P. Guga, M. Koziokiewicz, M. Sochacki, M. W. Wieczorek, and J. Baszczyk. 1998. Deoxyribonucleoside 3′-O-(2-Thio- and 2-Oxo-"spiro" -4,4-pentamethylene-1,3,2-oxathiaphospholane)s: monomers for stereocontrolled synthesis of oligo(deoxyribonucleoside phosphorothioate)s and chimeric PS/PO oligonucleotides. J. Am. Chem. Soc. 120:7156-7167.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 7156-7167
-
-
Stec, W.J.1
Karwowski, B.2
Boczkowska, M.3
Guga, P.4
Koziokiewicz, M.5
Sochacki, M.6
Wieczorek, M.W.7
Baszczyk, J.8
-
53
-
-
0030819086
-
Antisense oligonucleotides: A new therapeutic approach
-
Temsamani, J., and P. Gunot. 1997. Antisense oligonucleotides: a new therapeutic approach. Biotechnol. Appl. Biochem. 26:65-71.
-
(1997)
Biotechnol. Appl. Biochem.
, vol.26
, pp. 65-71
-
-
Temsamani, J.1
Gunot, P.2
-
54
-
-
0032819496
-
Hybrid-hybrid matrix structural refinement of a DNA three-way junction from 3D NOESY-NOESY
-
Thiviyanathan, V., B. A. Luxon, N. B. Leontis, N. Illangasekare, D. G. Donne, and D. G. Gorenstein. 1999. Hybrid-hybrid matrix structural refinement of a DNA three-way junction from 3D NOESY-NOESY. J. Biomol. NMR. 14:209-221.
-
(1999)
J. Biomol. NMR
, vol.14
, pp. 209-221
-
-
Thiviyanathan, V.1
Luxon, B.A.2
Leontis, N.B.3
Illangasekare, N.4
Donne, D.G.5
Gorenstein, D.G.6
-
55
-
-
0032544177
-
Insights into the dynamic nature of DNA duplex structure via analysis of nuclear Overhauser effect intensities
-
Tonelli, M., and T. L. James. 1998. Insights into the dynamic nature of DNA duplex structure via analysis of nuclear Overhauser effect intensities. Biochemistry. 37:11478-11487.
-
(1998)
Biochemistry
, vol.37
, pp. 11478-11487
-
-
Tonelli, M.1
James, T.L.2
-
57
-
-
0025367860
-
Time-average nuclear Overhauser effect distance restraints applied to tendamistat
-
Torda, A. E., R. M. Scheek, and W. F. van Gunsteren. 1990. Time-average nuclear Overhauser effect distance restraints applied to tendamistat. J. Mol. Biol. 214:223-235.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 223-235
-
-
Torda, A.E.1
Scheek, R.M.2
Van Gunsteren, W.F.3
-
58
-
-
0028815252
-
Probability assessment of conformational ensembles: Sugar repuckering in a DNA duplex in solution
-
Ulyanov, N. B., U. Schmitz, A. Kumar, and T. L. James. 1995. Probability assessment of conformational ensembles: sugar repuckering in a DNA duplex in solution. Biophys. J. 68:13-24.
-
(1995)
Biophys. J.
, vol.68
, pp. 13-24
-
-
Ulyanov, N.B.1
Schmitz, U.2
Kumar, A.3
James, T.L.4
-
59
-
-
0026785555
-
The octamer motif in immunoglobulin genes: Extraction of structural constraints from two-dimensional NMR studies
-
Weisz, K., R. H. Shafer, W. Egan, and T. L. James. 1992. The octamer motif in immunoglobulin genes: extraction of structural constraints from two-dimensional NMR studies. Biochemistry. 31:7477-7487.
-
(1992)
Biochemistry
, vol.31
, pp. 7477-7487
-
-
Weisz, K.1
Shafer, R.H.2
Egan, W.3
James, T.L.4
-
60
-
-
0028013525
-
Solution structure of the octamer motif in immunoglobulin genes via restrained molecular dynamics calculations
-
Weisz, K., R. H. Shafer, W. Egan, and T. L. James. 1994. Solution structure of the octamer motif in immunoglobulin genes via restrained molecular dynamics calculations. Biochemistry. 33:354-366.
-
(1994)
Biochemistry
, vol.33
, pp. 354-366
-
-
Weisz, K.1
Shafer, R.H.2
Egan, W.3
James, T.L.4
-
62
-
-
0031113361
-
The dynamic NMR structure of the TΨC-loop: Implications for the specificity of tRNA methylation
-
Yao, L. J., T. L. James, J. T. Kealey, D. V. Santi, and U. Schmitz. 1997. The dynamic NMR structure of the TΨC-loop: implications for the specificity of tRNA methylation. J. Biomol. NMR. 9:229-244.
-
(1997)
J. Biomol. NMR
, vol.9
, pp. 229-244
-
-
Yao, L.J.1
James, T.L.2
Kealey, J.T.3
Santi, D.V.4
Schmitz, U.5
-
63
-
-
0025800219
-
Static and statistical bending of DNA evaluated by Monte Carlo simulations
-
Zhurkin, V. B., N. B. Ulyanov, A. A. Gorin, and R. L. Jemigan. 1991. Static and statistical bending of DNA evaluated by Monte Carlo simulations. Proc. Natl. Acad. Sci. USA. 88:7046-7050.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 7046-7050
-
-
Zhurkin, V.B.1
Ulyanov, N.B.2
Gorin, A.A.3
Jemigan, R.L.4
|