Isolation and characterization of microsatellite loci in Swietenia humilis (Meliaceae): An endangered tropical hardwood species

Molecular Ecology

Volumn 6, Issue 9, 1997, Pages 851-860

  White, G ^a   Powell, W ^a  

^a SCOTTISH CROP RESEARCH INSTITUTE   (United Kingdom)

Author keywords

Conservation; Enriched library; Genetic variation; Meliaceae; Microsatellites; Swietenia humilis

Indexed keywords

MELIACEAE; SWIETENIA HUMILIS;

EID: 0030815601     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.1997.tb00139.x     Document Type: Article

References (40)

1. Allen PJ, Amos W, Pomeroy PP, Twiss SD (1995) Microsatellite variation in grey seals (Halichoerus grypus) shows evidence of genetic differentiation between two British breeding colonies. Molecular Ecology, 4, 653-662.
2. Allendorf FW (1983) Isolation, gene flow and genetic differentiation among populations. In: Genetics and Conservation (eds Schonewauld-Cox CM, Chambers SM, MacBryde B, Thomas L), pp. 51-65. Benjamin/Cumming, London.
3. Amos B, Schlötterer C, Tautz D (1993) Social structure of pilot whales revealed by analytical DNA profiling. Science, 260, 670-672.
4. Barton NH, Slatkin M (1986) A quasi-equilibrium theory of the distribution of rare alleles in a subdivided population. Heredity, 56, 409-416.
5. Bruford M, Wayne R (1993) Microsatellites and their applications to population genetic studies. Current Opinion in Genetics and Development, 3, 939-943.
6. Chalmers KJ, Newton AC, Waugh R, Wilson J, Powell W (1994) Evaluation of the extent of genetic variation in mahoganies (Meliaceae) using RAPD markers. Theoretical and Applied Genetics, 89, 504-508.
7. Condit R, Hubbell H (1991) Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. Genome, 34, 66-71.
8. Dallas JF, Dod B, Boursot P, Prager EM, Bonhomme F (1995) Population subdivision and gene flow in Danish house mice. Molecular Ecology, 4, 311-320.
9. Edwards KJ, Barker JHA, Daly A, Jones C, Karp A (1996) Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques, 20, 758-760.
10. Gawal NJ, Jarret RL (1991) A modified CTAB DNA extraction procedure for Musa and Ipomoea. Plant Molecular Biology Reporter, 9, 262-266.
11. Hall P, Orrel LC, Bawa KS (1994) Genetic diversity and mating system in a tropical tree, Carapa guianensis (Meliaceae). American Journal of Botany, 81 (9), 1104-1111.
12. Hamada H, Petrino MG, Kakunaga R (1982) A novel repeated element with z-DNA-forming potential is widely found in evolutionary diverse eukaryotic genomes. Proceedings of the National Academy of Sciences of the USA, 79, 6495-6469.
13. Hamrick JL, Godt MJW (1990) Allozyme diversity in plant species. In: Plant Population Genetics, Breeding and Genetic Resources (eds Brown AHD, Clegg MT, Kahler AL, Weir BS), pp. 43-46. Sinauer Associates Inc., Sunderland, MA.
14. Hamrick JL, Loveless MD (1989) The genetic structure of tropical tree popualtions: associations with reproductive biology. In: The Evolutionary Ecology of Plants (eds Bock JH, Linhart YB), pp. 129-146. Westview Press, Boulder, CO.
15. Karagyozov L, Kalcheva ID, Chapman VM (1993) Construction of random small-insert libraries highly enriched for simple sequence repeats. Nucleic Acids Research, 21, 3911-3912.
16. Kijas JMH, Fowler JCS, Garbett CA, Thomas MR (1994) Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin coated magnetic particles. Biotechniques, 16, 657-660.
17. Koorey DJ, Bishop GA, McCaughan GW (1993) Allele non-amplification - a source of confusion in linkage studies employing microsatellite polymorphisms. Human Molecular Genetics, 44, 397-401.
18. Levene H (1949) On a matching problem arising in genetics. Annals of Mathematics and Statistics, 20, 91-94.
19. Li CC, Horvitz DG (1953) Some methods estimating the inbreeding coefficient. American Journal of Human Genetics, 5, 107-117.
20. Litt M, Luty JA (1989) A hypervariable microsatellite revealed by in-vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. American Journal of Human Genetics, 44, 397-401.
21. Love JM, Knight AM, McAleer MA, Todd JA (1990) Toward construction of a high resolution map of the mouse genome using PCR-analysed microsatellites. Nucleic Acid Research, 18, 4123-4130.
22. n microsatellite repeat sequences directly from flow-sorted chromosomes. Nucleic Acids Research, 21, 4641-4642.
23. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. The Plant Journal, 3, 175-182.
24. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of indivduals. Genetics, 86, 187-198.
25. Pemberton JM, Slate J, Bancroft DR, Barrett JA (1995) Non-amplifying alleles at microsatellite loci: a caution for parentage studies. Molecular Ecology, 4, 249-252.
26. Powell W, Machray GC, Provan J (1996) Polymorphism revealed by simple sequence repeats. Trends in Plant Science, 1, 209-245.
27. Queller D, Strassmann J, Hughes C (1993) Microsatellites and kinship. Trends in Ecology and Evolution, 8, 285-288.
28. Raymond M, Rousset F (1995) GENEPOP (Version 1. 2). A population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
29. Saghai-Maroof MA, Biyashev RM, Yang GP, Khang Q, Allard RW (1994) Extraordinarily polymorphic microsatellite DNA in barley: species diversity, chromosomal locations and population dynamics. Proceedings of the National Academy of Sciences of the USA, 91, 5466-5470.
30. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbour Laboratory Press, Cold Spring Harbour, New York.
31. Slatkin M, Barton NH (1989) A comparison of three methods for estimating average levels of geneflow. Evolution, 43, 1349-1368.
32. Styles BT (1981) Swietenioideae. In: Flora Neotropica Monograph No. 28 (eds Pennington TD, Styles BT, Taylor DAH). New York Botanical Garden, New York, USA.
33. Swofford DL, Selander RB (1981) BIOSYS-1: a fortran program for the comprehensive analysis of electrophoretic data in population genetics and systematics. Journal of Heredity, 72, 281-283.
34. Tautz D, Renz M (1984) Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Research, 12, 4127-4138.
35. Wang Z, Weber JL, Zhong G, Tanksley SD (1994) Survey of plant short tandem repeats. Theoretical and Applied Genetics, 88, 1-6.
36. n polymorphisms. Genomics, 7, 524-530.
37. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. American Journal of Human Genetics, 44, 388-396.
38. Workman PL, Niswander JD (1970) Population studies on south-western Indian tribes. II. Local genetic differentiation in the Papago. American Journal of Human Genetics, 22, 24-49.
39. Wright S (1965) The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 19, 395-120.
40. Wright S (1978) Evolution and the Genetics of Populations, Vol. 4. Variability Within and Among Natural Populations. University of Chicago Press, Chicago, IL.