메뉴 건너뛰기




Volumn 60, Issue 1-2, 2003, Pages 97-106

Modeling of ionic relaxation around a biomembrane disk

Author keywords

Bacteriorhodopsin; Brownian dynamics; Diffuse double layer; Ionic relaxation

Indexed keywords

BROWNIAN MOVEMENT; COMPUTER SIMULATION; COMPUTER SOFTWARE; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; PROTEINS; RELAXATION PROCESSES;

EID: 0043172523     PISSN: 15675394     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1567-5394(03)00052-5     Document Type: Article
Times cited : (8)

References (27)
  • 1
    • 0032084499 scopus 로고    scopus 로고
    • Molecular dynamics simulations of ion channels: How far have we gone and where are we heading?
    • Roux B. Molecular dynamics simulations of ion channels: how far have we gone and where are we heading? Biophys. J. 74:1998;2744-2745.
    • (1998) Biophys. J. , vol.74 , pp. 2744-2745
    • Roux, B.1
  • 2
    • 0020212027 scopus 로고
    • Jumping frequencies in membrane channels: Comparison between stochastic, molecular dynamics and rate theory
    • Lauger P., Apell H. Jumping frequencies in membrane channels: comparison between stochastic, molecular dynamics and rate theory. Biophys. Chem. 16:1982;209.
    • (1982) Biophys. Chem. , vol.16 , pp. 209
    • Lauger, P.1    Apell, H.2
  • 3
    • 0023371196 scopus 로고
    • Stochastic theory of ion movement in channels with single-ion occupancy. Application to sodium permeation of gramicidin channels
    • Jakobsson E., Chiu S.W. Stochastic theory of ion movement in channels with single-ion occupancy. Application to sodium permeation of gramicidin channels. Biophys. J. 52:1987;33-45.
    • (1987) Biophys. J. , vol.52 , pp. 33-45
    • Jakobsson, E.1    Chiu, S.W.2
  • 4
    • 0031870447 scopus 로고    scopus 로고
    • Study of ionic currents across a model membrane channel using Brownian dynamics
    • Chung S.H., Hoyles M., Allen T., Kuyucak S. Study of ionic currents across a model membrane channel using Brownian dynamics. Biophys. J. 75:1998;793-809.
    • (1998) Biophys. J. , vol.75 , pp. 793-809
    • Chung, S.H.1    Hoyles, M.2    Allen, T.3    Kuyucak, S.4
  • 5
    • 0002786541 scopus 로고    scopus 로고
    • Brownian dynamics study of ion transport in the vestibule of membrane channels
    • Li S.C., Hoyles M., Kuyucak S., Chung S.H. Brownian dynamics study of ion transport in the vestibule of membrane channels. Biophys. J. 74:1998;37-47.
    • (1998) Biophys. J. , vol.74 , pp. 37-47
    • Li, S.C.1    Hoyles, M.2    Kuyucak, S.3    Chung, S.H.4
  • 6
    • 0033579482 scopus 로고    scopus 로고
    • Brownian dynamics simulation of ion flow through porin channels
    • Schirmer T., Phale P. Brownian dynamics simulation of ion flow through porin channels. J. Mol. Biol. 294:1999;1159-1168.
    • (1999) J. Mol. Biol. , vol.294 , pp. 1159-1168
    • Schirmer, T.1    Phale, P.2
  • 7
    • 0033884302 scopus 로고    scopus 로고
    • A grand canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels
    • Im W., Seefeld S., Roux B. A grand canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels. Biophys. J. 79:2000;788-801.
    • (2000) Biophys. J. , vol.79 , pp. 788-801
    • Im, W.1    Seefeld, S.2    Roux, B.3
  • 10
    • 0000134443 scopus 로고    scopus 로고
    • Adsorption of proteins onto charged surfaces: A Monte Carlo approach with explicit ions
    • Juffer A.H., de Vlieg J., Argos P. Adsorption of proteins onto charged surfaces: a Monte Carlo approach with explicit ions. J. Comput. Chem. 17:1996;1783-1803.
    • (1996) J. Comput. Chem. , vol.17 , pp. 1783-1803
    • Juffer, A.H.1    De Vlieg, J.2    Argos, P.3
  • 11
    • 0034106946 scopus 로고    scopus 로고
    • Tests of continuum theories as models of ion channels: I. Poisson-Boltzmann theory versus Brownian dynamics
    • Moy G., Corry B., Kuyucak S., Chung S.H. Tests of continuum theories as models of ion channels: I. Poisson-Boltzmann theory versus Brownian dynamics. Biophys. J. 78:2000;2349-2363.
    • (2000) Biophys. J. , vol.78 , pp. 2349-2363
    • Moy, G.1    Corry, B.2    Kuyucak, S.3    Chung, S.H.4
  • 12
    • 0034033431 scopus 로고    scopus 로고
    • Tests of continuum theories as models of ion channels: II. Poisson-Nernst-Planck Theory versus Brownian dynamics
    • Corry B., Kuyucak S., Chung S.H. Tests of continuum theories as models of ion channels: II. Poisson-Nernst-Planck Theory versus Brownian dynamics. Biophys. J. 78:2000;2364-2381.
    • (2000) Biophys. J. , vol.78 , pp. 2364-2381
    • Corry, B.1    Kuyucak, S.2    Chung, S.H.3
  • 13
    • 0036585605 scopus 로고    scopus 로고
    • Theory of electric signals of membrane proteins in three dimensions
    • Oroszi L., Dér A., Ormos P. Theory of electric signals of membrane proteins in three dimensions. Eur. Biophys. J. 31:2002;136-144.
    • (2002) Eur. Biophys. J. , vol.31 , pp. 136-144
    • Oroszi, L.1    Dér, A.2    Ormos, P.3
  • 14
    • 0029123221 scopus 로고
    • Introduction of a method for three-dimensional mapping of the charge motion in bacteriorhodopsin
    • Dér A., Ormos P. Introduction of a method for three-dimensional mapping of the charge motion in bacteriorhodopsin. Biophys. Chem. 56:1995;159-163.
    • (1995) Biophys. Chem. , vol.56 , pp. 159-163
    • Dér, A.1    Ormos, P.2
  • 16
    • 0024335154 scopus 로고
    • Protein electric response signals from dielectrically polarized systems
    • Keszthelyi L., Ormos P. Protein electric response signals from dielectrically polarized systems. J. Membr. Biol. 109:1989;193-200.
    • (1989) J. Membr. Biol. , vol.109 , pp. 193-200
    • Keszthelyi, L.1    Ormos, P.2
  • 17
    • 36749114960 scopus 로고
    • A computer simulation of charged particles in solution: I. Technique and equilibrium properties
    • Ermak D.L. A computer simulation of charged particles in solution: I. Technique and equilibrium properties. J. Chem. Phys. 62:1975;4162-4196.
    • (1975) J. Chem. Phys. , vol.62 , pp. 4162-4196
    • Ermak, D.L.1
  • 19
    • 0001166734 scopus 로고
    • Zur Theorie der Elektrolyte
    • Debye P., Hückel E. Zur Theorie der Elektrolyte. Physik. Zeitschr. 24:1923;185-206.
    • (1923) Physik. Zeitschr. , vol.24 , pp. 185-206
    • Debye, P.1    Hückel, E.2
  • 20
    • 8944227986 scopus 로고
    • Electric signals associated with the photocycle of bacteriorhodopsin
    • Keszthelyi L., Ormos P. Electric signals associated with the photocycle of bacteriorhodopsin. FEBS Lett. 109:1980;189-193.
    • (1980) FEBS Lett. , vol.109 , pp. 189-193
    • Keszthelyi, L.1    Ormos, P.2
  • 22
    • 0026709294 scopus 로고
    • Charge displacements during the photocycle of halorhodopsin
    • Dér A., Száraz S., Keszthelyi L. Charge displacements during the photocycle of halorhodopsin. J. Photochem. Photobiol. B. 15:1992;299-306.
    • (1992) J. Photochem. Photobiol. B. , vol.15 , pp. 299-306
    • Dér, A.1    Száraz, S.2    Keszthelyi, L.3
  • 25
    • 0034075676 scopus 로고    scopus 로고
    • Charge motions during the photocycle of pharaonis halorhodopsin
    • Ludmann K., Ibron G., Lanyi J.K., Varo G. Charge motions during the photocycle of pharaonis halorhodopsin. Biophys. J. 78:2000;959-966.
    • (2000) Biophys. J. , vol.78 , pp. 959-966
    • Ludmann, K.1    Ibron, G.2    Lanyi, J.K.3    Varo, G.4
  • 26
    • 0036213143 scopus 로고    scopus 로고
    • Characterization of the azide-dependent bacteriorhodopsin-like photocycle of salinarum halorhodopsin
    • Lakatos M., Groma G.I., Ganea C., Lanyi J.K., Varo G. Characterization of the azide-dependent bacteriorhodopsin-like photocycle of salinarum halorhodopsin. Biophys. J. 82:2002;1687-1695.
    • (2002) Biophys. J. , vol.82 , pp. 1687-1695
    • Lakatos, M.1    Groma, G.I.2    Ganea, C.3    Lanyi, J.K.4    Varo, G.5
  • 27
    • 0342657187 scopus 로고    scopus 로고
    • Buffer effects on electric signals of light-excited bacteriorhodopsin
    • Tóth-Boconádi R., Dér A., Keszthelyi L. Buffer effects on electric signals of light-excited bacteriorhodopsin. Biophys. J. 78:2000;3170-3177.
    • (2000) Biophys. J. , vol.78 , pp. 3170-3177
    • Tóth-Boconádi, R.1    Dér, A.2    Keszthelyi, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.