-
1
-
-
0036166744
-
Dragon Promoter Finder: Recognition of vertebrate RNA polymerase II promoters
-
Bajic, V. B., Seah, S. H., Chong, A., Zhang, G., Koh, J. L. and Brusic, V. (2002). Dragon Promoter Finder: Recognition of vertebrate RNA polymerase II promoters. Bioinformatics 18, 198-199.
-
(2002)
Bioinformatics
, vol.18
, pp. 198-199
-
-
Bajic, V.B.1
Seah, S.H.2
Chong, A.3
Zhang, G.4
Koh, J.L.5
Brusic, V.6
-
2
-
-
0036081345
-
GenBank
-
Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., Rapp, B. A. and Wheeler D. L. (2002). GenBank. Nucleic Acids Res. 30, 17-20.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 17-20
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
3
-
-
0028784743
-
MATRIX SEARCH 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices
-
Chen, Q. K., Hertz, G. Z. and Stormo, G. D. (1995). MATRIX SEARCH 1.0: A computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. Comput. Appl. Biosci. 11, 563-566.
-
(1995)
Comput. Appl. Biosci.
, vol.11
, pp. 563-566
-
-
Chen, Q.K.1
Hertz, G.Z.2
Stormo, G.D.3
-
4
-
-
0035735265
-
Computational identification of promoters and first exons in the human genome
-
Davuluri, R. V., Grosse, I. and Zhang, M. Q. (2001). Computational identification of promoters and first exons in the human genome. Nat. Genet. 29, 412-417.
-
(2001)
Nat. Genet.
, vol.29
, pp. 412-417
-
-
Davuluri, R.V.1
Grosse, I.2
Zhang, M.Q.3
-
6
-
-
0031214793
-
A novel method to develop highly specific models for regulatory units detects a new LTR in GenBank which contains a functional promoter
-
Frech, K., Danescu-Mayer, J. and Werner, T. (1997). A novel method to develop highly specific models for regulatory units detects a new LTR in GenBank which contains a functional promoter. J. Mol. Biol. 270, 674-687.
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 674-687
-
-
Frech, K.1
Danescu-Mayer, J.2
Werner, T.3
-
7
-
-
4243406081
-
Muscle actin genes: A first step towards computational classification of tissue specific promoters
-
Frech, K., Quandt, K. and Werner, T. (1998). Muscle actin genes: A first step towards computational classification of tissue specific promoters. In Silico Biol. 1, 0005. http://www.bioinfo.de/isb/1998/01/0005/
-
(1998)
In Silico Biol.
, vol.1
, pp. 0005
-
-
Frech, K.1
Quandt, K.2
Werner, T.3
-
8
-
-
0041856821
-
MATCH™ - A tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes
-
Wingender, E., Hofestädt, R. and Liebich, I. (eds.), Braunschweig
-
Goessling, E., Kel-Margoulis, O.V., Kel, A. E. and Wingender, E. (2001) MATCH™ - A tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes. In: Proceedings of the German Conference on Bioinformatics GCB 2001, Wingender, E., Hofestädt, R. and Liebich, I. (eds.), Braunschweig, pp. 158-161. http://www.bioinfo.de/isb/gcb01/poster/goessling.html
-
(2001)
Proceedings of the German Conference on Bioinformatics GCB 2001
, pp. 158-161
-
-
Goessling, E.1
Kel-Margoulis, O.V.2
Kel, A.E.3
Wingender, E.4
-
9
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium (2001). Initial sequencing and analysis of the human genome. Nature 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
10
-
-
0028863819
-
A compilation of composite regulatory elements affecting gene transcription in vertebrates
-
Kel, O. V., Romaschenko, A. G., Kel, A. E., Wingender, E. and Kolchanov, N. A. (1995). A compilation of composite regulatory elements affecting gene transcription in vertebrates. Nucleic Acids Res. 23, 4097-4103.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4097-4103
-
-
Kel, O.V.1
Romaschenko, A.G.2
Kel, A.E.3
Wingender, E.4
Kolchanov, N.A.5
-
11
-
-
0033532171
-
Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells
-
Kel, A., Kel-Margoulis, O., Babenko, V. and Wingender, E. (1999). Recognition of NFATp/AP-1 composite elements within genes induced upon the activation of immune cells. J. Mol. Biol. 288, 353-376.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 353-376
-
-
Kel, A.1
Kel-Margoulis, O.2
Babenko, V.3
Wingender, E.4
-
12
-
-
0035946917
-
Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors
-
Kel, A. E., Kel-Margoulis, O. V., Farnham, P. J., Bartley, S. M., Wingender, E. and Zhang, M. Q. (2001). Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors. J. Mol. Biol. 309, 99-120.
-
(2001)
J. Mol. Biol.
, vol.309
, pp. 99-120
-
-
Kel, A.E.1
Kel-Margoulis, O.V.2
Farnham, P.J.3
Bartley, S.M.4
Wingender, E.5
Zhang, M.Q.6
-
13
-
-
0041853625
-
MATCH™: A tool for searching transcription factor binding sites in DNA sequences
-
Kel, A. E., Gössling, E., Reuter, I., Cheremushkin, E., Kel-Margoulis, O. V. and Wingender, E. (2003). MATCH™: A tool for searching transcription factor binding sites in DNA sequences. Nucleic Acids Res. 31, 3576-3579.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3576-3579
-
-
Kel, A.E.1
Gössling, E.2
Reuter, I.3
Cheremushkin, E.4
Kel-Margoulis, O.V.5
Wingender, E.6
-
14
-
-
0035998754
-
TRANSCompel: A database on composite regulatory elements in eukaryotic genes
-
Kel-Margoulis, O. V., Kel, A. E., Reuter, I., Deineko, I. V., Wingender, E. (2002). TRANSCompel: A database on composite regulatory elements in eukaryotic genes. Nucleic Acids Res. 30, 332-334.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 332-334
-
-
Kel-Margoulis, O.V.1
Kel, A.E.2
Reuter, I.3
Deineko, I.V.4
Wingender, E.5
-
15
-
-
18444387984
-
Transcription Regulatory Regions Database (TRRD): Its status in 2002
-
Kolchanov, N. A., Ignatieva, E. V., Ananko, E. A., Podkolodnaya, O. A., Stepanenko, I. L., Merkulova, T. I., Pozdnyakov, M. A., Podkolodny, N. L., Naumochkin, A. N. and Romashchenko, A. G. (2002). Transcription Regulatory Regions Database (TRRD): Its status in 2002. Nucleic Acids Res. 30, 312-317.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 312-317
-
-
Kolchanov, N.A.1
Ignatieva, E.V.2
Ananko, E.A.3
Podkolodnaya, O.A.4
Stepanenko, I.L.5
Merkulova, T.I.6
Pozdnyakov, M.A.7
Podkolodny, N.L.8
Naumochkin, A.N.9
Romashchenko, A.G.10
-
16
-
-
0037208166
-
TRANSFAC: Transcriptional regulation, from patterns to profiles
-
Matys, V., Fricke, E., Geffers, R., Goessling, E., Haubrock, M., Hehl, R., Hornischer, K., Karas, D., Kel, A. E., Kel-Margoulis, O. V., Kloos, D.-U., Land, S., Lewicki-Potapov, B., Michael, H., Münch, R., Reuter, I., Rotert, S., Saxel, H., Scheer, M., Thiele, S., Wingender, E. (2003). TRANSFAC: Transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 31, 374-378.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 374-378
-
-
Matys, V.1
Fricke, E.2
Geffers, R.3
Goessling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
Kloos, D.-U.11
Land, S.12
Lewicki-Potapov, B.13
Michael, H.14
Münch, R.15
Reuter, I.16
Rotert, S.17
Saxel, H.18
Scheer, M.19
Thiele, S.20
Wingender, E.21
more..
-
17
-
-
0001619859
-
High-quality protein knowledge resource: SWISS-PROT and TrEMBL
-
O'Donovan, C., Martin, M.J., Gattiker, A., Gasteiger, E., Bairoch, A. and Apweiler, R. (2002). High-quality protein knowledge resource: SWISS-PROT and TrEMBL. Brief Bioinform. 3, 275-284.
-
(2002)
Brief Bioinform.
, vol.3
, pp. 275-284
-
-
O'Donovan, C.1
Martin, M.J.2
Gattiker, A.3
Gasteiger, E.4
Bairoch, A.5
Apweiler, R.6
-
18
-
-
0035224747
-
Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition
-
Ohler, U., Niemann, H., Liao, G.-C. and Rubin, G. M. (2001). Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition. Bioinformatics 17, S199-S206.
-
(2001)
Bioinformatics
, vol.17
-
-
Ohler, U.1
Niemann, H.2
Liao, G.-C.3
Rubin, G.M.4
-
19
-
-
0031854546
-
Transcription regulatory region analysis using signal detection and fuzzy clustering
-
Pickert, L., Reuter, I., Klawonn, F. and Wingender, E. (1998). Transcription regulatory region analysis using signal detection and fuzzy clustering. Bioinformatics 14, 244-251.
-
(1998)
Bioinformatics
, vol.14
, pp. 244-251
-
-
Pickert, L.1
Reuter, I.2
Klawonn, F.3
Wingender, E.4
-
20
-
-
0035680324
-
The HUGO Gene Nomenclature Committee (HGNC)
-
Povey, S., Lovering, R., Bruford, E., Wright, M., Lush, M. and Wain, H. (2001). The HUGO Gene Nomenclature Committee (HGNC). Hum. Genet. 109, 678-680.
-
(2001)
Hum. Genet.
, vol.109
, pp. 678-680
-
-
Povey, S.1
Lovering, R.2
Bruford, E.3
Wright, M.4
Lush, M.5
Wain, H.6
-
21
-
-
0036089483
-
The Eukaryotic Promoter Database, EPD: New entry types and links to gene expression data
-
Praz, V., Perier, R., Bonnard, C. and Bucher, P. (2002). The Eukaryotic Promoter Database, EPD: New entry types and links to gene expression data. Nucleic Acids Res. 30, 322-324.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 322-324
-
-
Praz, V.1
Perier, R.2
Bonnard, C.3
Bucher, P.4
-
22
-
-
0028971143
-
MatInd and MatInspector - New fast and sensitive tools for detection of consensus matches in nucleotide sequence data
-
Quandt, K., Frech, K., Karas, H., Wingender, E. and Werner, T. (1995). MatInd and MatInspector - New fast and sensitive tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23, 4878-4884.
-
(1995)
Nucleic Acids Res.
, vol.23
, pp. 4878-4884
-
-
Quandt, K.1
Frech, K.2
Karas, H.3
Wingender, E.4
Werner, T.5
-
23
-
-
0042357727
-
-
Dissertation, TU Braunschweig
-
Reuter, I. (2000). Dissertation, TU Braunschweig. http://www.biblio.tu-bs.de/ediss/data/20000317a/20000317a.html.
-
(2000)
-
-
Reuter, I.1
-
24
-
-
0034737325
-
Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach
-
Scherf, M., Klingenhoff, A. and Werner, T. (2000). Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: A novel context analysis approach. J. Mol. Biol. 297, 599-606.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 599-606
-
-
Scherf, M.1
Klingenhoff, A.2
Werner, T.3
-
25
-
-
18444410747
-
The EMBL Nucleotide Sequence Database
-
Stoesser, G., Baker, W., Van Den Broek, A., Camon, E., Garcia-Pastor, M., Kanz, C., Kulikova, T., Leinonen, R., Lin, Q., Lombard, V., Lopez, R., Redaschi, N., Stoehr, P., Tuli, M.A., Tzouvara, K. and Vaughan, R. (2002). The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 30, 21-26.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 21-26
-
-
Stoesser, G.1
Baker, W.2
Van Den Broek, A.3
Camon, E.4
Garcia-Pastor, M.5
Kanz, C.6
Kulikova, T.7
Leinonen, R.8
Lin, Q.9
Lombard, V.10
Lopez, R.11
Redaschi, N.12
Stoehr, P.13
Tuli, M.A.14
Tzouvara, K.15
Vaughan, R.16
-
26
-
-
0036081146
-
DBTSS: DataBase of human transcriptional start sites and full-length cDNAs
-
Suzuki, Y., Yamashita, R., Nakai, K. and Sugano, S. (2002). DBTSS: DataBase of human transcriptional start sites and full-length cDNAs. Nucleic Acids Res. 30, 328-331.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 328-331
-
-
Suzuki, Y.1
Yamashita, R.2
Nakai, K.3
Sugano, S.4
-
27
-
-
0036081078
-
DNA Data Bank of Japan (DDBJ) for genome scale research in life science
-
Tateno, Y., Imanishi, T., Miyazaki, S., Fukami-Kobayashi, K., Saitou, N., Sugawara, H., and Gojobori, T. (2002). DNA Data Bank of Japan (DDBJ) for genome scale research in life science. Nucleic Acids Res. 30, 27-30.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 27-30
-
-
Tateno, Y.1
Imanishi, T.2
Miyazaki, S.3
Fukami-Kobayashi, K.4
Saitou, N.5
Sugawara, H.6
Gojobori, T.7
-
28
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
The Gene Ontology Consortium. (2001). Creating the gene ontology resource: Design and implementation. Genome Res. 11, 1425-1433.
-
(2001)
Genome Res
, vol.11
, pp. 1425-1433
-
-
-
29
-
-
18444384216
-
Database resources of the National Center for Biotechnology Information: 2002 update
-
Wheeler, D. L., Church, D. M., Lash, A. E., Leipe, D. D., Madden, T. L., Pontius, J. U., Schuler, G. D., Schriml, L. M., Tatusova, T. A., Wagner, L. and Rapp, B. A. (2002). Database resources of the National Center for Biotechnology Information: 2002 update. Nucleic Acids. Res. 30, 13-16.
-
(2002)
Nucleic Acids. Res.
, vol.30
, pp. 13-16
-
-
Wheeler, D.L.1
Church, D.M.2
Lash, A.E.3
Leipe, D.D.4
Madden, T.L.5
Pontius, J.U.6
Schuler, G.D.7
Schriml, L.M.8
Tatusova, T.A.9
Wagner, L.10
Rapp, B.A.11
-
30
-
-
0031323575
-
Classification scheme of eukaryotic transcription factors
-
Wingender, E. (1997). Classification scheme of eukaryotic transcription factors. Mol. Biol. Engl. Tr. 31, 483-497.
-
(1997)
Mol. Biol. Engl. Tr.
, vol.31
, pp. 483-497
-
-
Wingender, E.1
-
31
-
-
0031309914
-
TRANSFAC Database as a Bridge between Sequence Data Libraries and Biological Function
-
R. B. Altman, A. K. Dunker, L. Hunter, T. E. Klein (eds.). World Scientific, Singapore - New Jersey - London - Hong Kong 1996
-
Wingender, E., Karas, H. and Knüppel, R. (1996). TRANSFAC Database as a Bridge between Sequence Data Libraries and Biological Function. Pacific Symposium on Biocomputing '97 (PSB'97), R. B. Altman, A. K. Dunker, L. Hunter, T. E. Klein (eds.). World Scientific, Singapore - New Jersey - London - Hong Kong 1996, pp. 477-485.
-
(1996)
Pacific Symposium on Biocomputing '97 (PSB'97)
, pp. 477-485
-
-
Wingender, E.1
Karas, H.2
Knüppel, R.3
|