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Volumn 5, Issue 9, 2003, Pages 754-764

Diversity of Bacteria and Archaea in sulphate-reducing enrichment cultures inoculated from serial dilution of Zostera noltii rhizosphere samples

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); DESULFOBACTERACEAE; DESULFOVIBRIO; DESULFOVIBRIO BASTINII; DESULFOVIBRIO DECHLORACETIVORANS; DESULFOVIBRIO SALEXIGENS; DESULFOVIBRIO ZOSTERAE; DESULFOVIBRIONACEAE; ZOSTERA; ZOSTERA NOLTII;

EID: 0042853316     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1470-2920.2003.00470.x     Document Type: Article
Times cited : (21)

References (42)
  • 1
    • 0342506808 scopus 로고    scopus 로고
    • Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA
    • Acinas, S.G., Rodríguez-Valera, F., and Pedrós-Alió, C. (1997) Spatial and temporal variation in marine bacterioplankton diversity as shown by RFLP fingerprinting of PCR amplified 16S rDNA. FEMS Microbiol Ecol 24: 27-40.
    • (1997) FEMS Microbiol Ecol , vol.24 , pp. 27-40
    • Acinas, S.G.1    Rodríguez-Valera, F.2    Pedrós-Alió, C.3
  • 2
    • 0032974993 scopus 로고    scopus 로고
    • Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA
    • Acinas, S.G., Antón, J., and Rodríguez-Valera, F. (1999) Diversity of free-living and attached bacteria in offshore Western Mediterranean waters as depicted by analysis of genes encoding 16S rRNA. Appl Environ Microbiol 65: 514-522.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 514-522
    • Acinas, S.G.1    Antón, J.2    Rodríguez-Valera, F.3
  • 3
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R.I., Ludwig, W., and Schleifer, K.-H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 43-169.
    • (1995) Microbiol Rev , vol.59 , pp. 43-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 4
    • 0030304837 scopus 로고    scopus 로고
    • Seasonal dynamics of Zostera noltii Hornem in the Bay of Arcachon (France)
    • Auby, I., and Labourg, P.J. (1996) Seasonal dynamics of Zostera noltii Hornem in the Bay of Arcachon (France). J Sea Res 35: 269-277.
    • (1996) J Sea Res , vol.35 , pp. 269-277
    • Auby, I.1    Labourg, P.J.2
  • 5
    • 0008070627 scopus 로고
    • Studies on Cytophaga fermentans, n. sp., a facultatively anaerobic lower myxobacteirum
    • Bachmann, B.J. (1955) Studies on Cytophaga fermentans, n. sp., a facultatively anaerobic lower myxobacteirum. J Gen Microbiol 13: 541-551.
    • (1955) J Gen Microbiol , vol.13 , pp. 541-551
    • Bachmann, B.J.1
  • 6
    • 0022917399 scopus 로고
    • Anaerobic degradation of phenol and phenol derivates by Desulfobacterium phenolicum sp. nov.
    • Bak, F., and Widdel, F. (1986) Anaerobic degradation of phenol and phenol derivates by Desulfobacterium phenolicum sp. nov. Arch Microbiol 146: 177-180.
    • (1986) Arch Microbiol , vol.146 , pp. 177-180
    • Bak, F.1    Widdel, F.2
  • 8
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganisms and microbial populations shifts associated with deforestation
    • Borneman, J., and Triplett, E.W. (1997) Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial populations shifts associated with deforestation. Appl Environ Microbiol 63: 2647-2653.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 12
    • 0028026970 scopus 로고
    • A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment
    • Devereux, R., and Mundfrom, G.W. (1994) A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment. Appl Environ Microbiol 60: 3437-3439.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 3437-3439
    • Devereux, R.1    Mundfrom, G.W.2
  • 13
    • 0030809390 scopus 로고    scopus 로고
    • Desulfospira joergensenii, gen nov., sp. nov., a new sulfate-reducing bacterium isolated from marine surface sediment
    • Finster, K., Liesack, W., and Tindall, B.J. (1997a) Desulfospira joergensenii, gen nov., sp. nov., a new sulfate-reducing bacterium isolated from marine surface sediment. Syst Appl Microbiol 20: 201-208.
    • (1997) Syst Appl Microbiol , vol.20 , pp. 201-208
    • Finster, K.1    Liesack, W.2    Tindall, B.J.3
  • 14
    • 0041625073 scopus 로고    scopus 로고
    • Sulfurospirillum arcachonense sp. nov., a new microaerophilic sulfur-reducing bacterium
    • Finster, K., Liesack, W., and Tindall, B.J. (1997b) Sulfurospirillum arcachonense sp. nov., a new microaerophilic sulfur-reducing bacterium. Int J Syst Bacteriol 39: 159-167.
    • (1997) Int J Syst Bacteriol , vol.39 , pp. 159-167
    • Finster, K.1    Liesack, W.2    Tindall, B.J.3
  • 15
    • 0031965087 scopus 로고    scopus 로고
    • Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment
    • Finster, K., Liesack, W., and Thamdrup, B. (1998) Elemental sulfur and thiosulfate disproportionation by Desulfocapsa sulfoexigens sp. nov., a new anaerobic bacterium isolated from marine surface sediment. Appl Environ Microbiol 64: 119-125.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 119-125
    • Finster, K.1    Liesack, W.2    Thamdrup, B.3
  • 17
    • 0033929777 scopus 로고    scopus 로고
    • Microdiversity of uncultured marine prokaryotes: The SAR11 cluster and the marine Archaea of Group I
    • García-Martínez, J., and Rodríguez-Valera, F. (2000) Microdiversity of uncultured marine prokaryotes: the SAR11 cluster and the marine Archaea of Group I. Mol Ecol 9: 935-948.
    • (2000) Mol Ecol , vol.9 , pp. 935-948
    • García-Martínez, J.1    Rodríguez-Valera, F.2
  • 18
    • 0001920286 scopus 로고
    • Carbon metabolism of sulfate-reducing bacteria
    • Odom, J.M., and Singleton, R., Jr, (eds). Springer, New York
    • Hansen, T.A. (1993) Carbon metabolism of sulfate-reducing bacteria. In The Sulfate-Reducing Bacteria: Contemporary Perspectives, Odom, J.M., and Singleton, R., Jr, (eds). Springer, New York, pp. 21-40.
    • (1993) The Sulfate-Reducing Bacteria: Contemporary Perspectives , pp. 21-40
    • Hansen, T.A.1
  • 19
    • 33846547311 scopus 로고
    • Spirochaeta litoralis sp. n., a strickly anaerobic marine spirochaeta
    • Hespell, R.B., and Canale-Parola, E. (1970) Spirochaeta litoralis sp. n., a strickly anaerobic marine spirochaeta. Arch Microbiol 74: 1-18.
    • (1970) Arch Microbiol , vol.74 , pp. 1-18
    • Hespell, R.B.1    Canale-Parola, E.2
  • 20
    • 0031912606 scopus 로고    scopus 로고
    • Novel division level bacterial diversity in a Yellow-stone hot spring
    • Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. (1998) Novel division level bacterial diversity in a Yellow-stone hot spring. J Bacteriol 180: 366-376.
    • (1998) J Bacteriol , vol.180 , pp. 366-376
    • Hugenholtz, P.1    Pitulle, C.2    Hershberger, K.L.3    Pace, N.R.4
  • 21
    • 0036136673 scopus 로고    scopus 로고
    • Phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria inhabiting an oxic-anoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization
    • Ito, T., Nielsen, J.L., Okabe, S., Watanabe, Y., and Nielsen, P.H. (2002) Phylogenetic identification and substrate uptake patterns of sulfate-reducing bacteria inhabiting an oxic-anoxic sewer biofilm determined by combining microautoradiography and fluorescent in situ hybridization. Appl Environ Microbiol 68: 356-364.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 356-364
    • Ito, T.1    Nielsen, J.L.2    Okabe, S.3    Watanabe, Y.4    Nielsen, P.H.5
  • 22
    • 0035155010 scopus 로고    scopus 로고
    • Reclassification of Desulfobacterium phenolicum as Desulfobacula phenolica comb. nov. and description of strain SaxT as Desulfotignum balticum gen nov., sp. nov.
    • Kuever, J., Könneke, M., Galushko, A., and Drzyzga, O. (2001) Reclassification of Desulfobacterium phenolicum as Desulfobacula phenolica comb. nov. and description of strain SaxT as Desulfotignum balticum gen nov., sp. nov. Int J Syst Evol Microbiol 51: 171-177.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 171-177
    • Kuever, J.1    Könneke, M.2    Galushko, A.3    Drzyzga, O.4
  • 23
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt, E and Goofellow, M. (eds). Chinchester, UK: John Wiley and Sons
    • Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt, E and Goofellow, M. (eds). Chinchester, UK: John Wiley and Sons.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics
    • Lane, D.J.1
  • 24
    • 0036795787 scopus 로고    scopus 로고
    • Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
    • Loy, A., Lehner, A., Lee, N., Adamczyk, J., Meier, H., Ernst, J., Schleifer, K.-H., and Wagner, M. (2002) Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl Environ Microbiol 68: 5064-5081.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 5064-5081
    • Loy, A.1    Lehner, A.2    Lee, N.3    Adamczyk, J.4    Meier, H.5    Ernst, J.6    Schleifer, K.-H.7    Wagner, M.8
  • 25
    • 0031973278 scopus 로고    scopus 로고
    • Abundance and spatial organization of Gram-negative sulfate-reducing bacteria in activated sludge investigated by in situ probing with specific 16S rRNA targeted oligonucleotides
    • Manz, W., Eisenbrecher, M., Neu, T.R., and Szewzyk, U. (1998) Abundance and spatial organization of Gram-negative sulfate-reducing bacteria in activated sludge investigated by in situ probing with specific 16S rRNA targeted oligonucleotides. FEMS Microbiol Ecol 25: 43-61.
    • (1998) FEMS Microbiol Ecol , vol.25 , pp. 43-61
    • Manz, W.1    Eisenbrecher, M.2    Neu, T.R.3    Szewzyk, U.4
  • 26
    • 0028981814 scopus 로고
    • Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments
    • Martínez-Murcia, A., Acinas, S.G., and Rodríguez-Valera, F. (1995) Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments. FEMS Microbiol Ecol 17: 247-255.
    • (1995) FEMS Microbiol Ecol , vol.17 , pp. 247-255
    • Martínez-Murcia, A.1    Acinas, S.G.2    Rodríguez-Valera, F.3
  • 27
    • 0032929312 scopus 로고    scopus 로고
    • Desulfovibrio zosterae sp. nov., a new sulfate reducer isolated from surface-sterilized roots of the seagrass Zostera marina
    • Nielsen, J.T., Liesack, W., and Finster, K. (1999) Desulfovibrio zosterae sp. nov., a new sulfate reducer isolated from surface-sterilized roots of the seagrass Zostera marina. Int J Syst Bacteriol 49: 859-865.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 859-865
    • Nielsen, J.T.1    Liesack, W.2    Finster, K.3
  • 28
    • 0035194159 scopus 로고    scopus 로고
    • Sulphate reduction and nitrogen fixation rates associated with roots, rhizomes and sediments from Zostera noltii and Spartina maritima meadows
    • Nielsen, L.P., Finster, K., Welsh, D.T., Donellly, A., Herbert, R.A., de Wit, R., and Lomstein, B.A. (2001) Sulphate reduction and nitrogen fixation rates associated with roots, rhizomes and sediments from Zostera noltii and Spartina maritima meadows. Environ Microbiol 3: 63-71.
    • (2001) Environ Microbiol , vol.3 , pp. 63-71
    • Nielsen, L.P.1    Finster, K.2    Welsh, D.T.3    Donellly, A.4    Herbert, R.A.5    De Wit, R.6    Lomstein, B.A.7
  • 30
    • 0001832094 scopus 로고
    • The family Chromatiaceae
    • Balows, A., Trüper, H.G., Dworkin, M., Harder, M., and Schleifer, K. H. (eds). New York: Springer-Verlag
    • Pfennig, N., and Trüper, H.G. (1991) The family Chromatiaceae. In The Prokaryotes. Vol. 4. Balows, A., Trüper, H.G., Dworkin, M., Harder, M., and Schleifer, K. H. (eds). New York: Springer-Verlag, pp. 3200-3222.
    • (1991) The Prokaryotes , vol.4 , pp. 3200-3222
    • Pfennig, N.1    Trüper, H.G.2
  • 31
    • 0005515407 scopus 로고
    • Nitrogen fixation by Desulfovibrio
    • Cole, J.A., and Ferguson, S.J., (eds). Cambridge University Press, Cambridge: Society for General Microbiology Symposium
    • Postgate, J.R., Kent, H.M., and Robson, R.L. (1988) Nitrogen fixation by Desulfovibrio. In The Nitrogen and Sulphur Cycles. Cole, J.A., and Ferguson, S.J., (eds). Cambridge University Press, Cambridge: Society for General Microbiology Symposium 42, pp. 457-471.
    • (1988) The Nitrogen and Sulphur Cycles , vol.42 , pp. 457-471
    • Postgate, J.R.1    Kent, H.M.2    Robson, R.L.3
  • 32
    • 15844365305 scopus 로고    scopus 로고
    • A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen nov., sp. nov.
    • Preston, C.M., Wu, K.Y., Molinsky, T.F., and DeLong, E.F. (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen nov., sp. nov. Proc Natl Acad Sci USA 93: 6241-6246.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 6241-6246
    • Preston, C.M.1    Wu, K.Y.2    Molinsky, T.F.3    DeLong, E.F.4
  • 33
    • 0027180582 scopus 로고
    • Complete oxidation of toluene under strictly anoxic conditions by a new sulfate-reducing bacterium
    • Rabus, R., Nordhaus, R., Ludwig, W., and Widdel, F. (1993) Complete oxidation of toluene under strictly anoxic conditions by a new sulfate-reducing bacterium. Appl Environ Microbiol 59: 1444-1451.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1444-1451
    • Rabus, R.1    Nordhaus, R.2    Ludwig, W.3    Widdel, F.4
  • 34
    • 0032863408 scopus 로고    scopus 로고
    • High bacterial diversity in permanently cold, marine sediments
    • Ravenschlag, K., Sahm, K., Pernthaler, J., and Amann, R. (1999) High bacterial diversity in permanently cold, marine sediments. Appl Environ Microbiol 65: 3982-3989.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3982-3989
    • Ravenschlag, K.1    Sahm, K.2    Pernthaler, J.3    Amann, R.4
  • 35
    • 0034045262 scopus 로고    scopus 로고
    • Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol
    • Sun, B., Cole, J.R., Sanford, R.A., and Tiedje, J.M. (2000) Isolation and characterization of Desulfovibrio dechloracetivorans sp. nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Appl Environ Microbiol 66: 2408-2413.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2408-2413
    • Sun, B.1    Cole, J.R.2    Sanford, R.A.3    Tiedje, J.M.4
  • 37
    • 0025260132 scopus 로고
    • Isolation of a carbohydrate-degrading sulfate-reducing bacterium, Desulfovibrio termitidis sp. nov., from the hindgut of the termite Heterotermes indicola (Wasman)
    • Trinkerl, M., Breunig, A., Schauder, R., and König, H. (1990) Isolation of a carbohydrate-degrading sulfate-reducing bacterium, Desulfovibrio termitidis sp. nov., from the hindgut of the termite Heterotermes indicola (Wasman). System Appl Microbiol 13: 372-377.
    • (1990) System Appl Microbiol , vol.13 , pp. 372-377
    • Trinkerl, M.1    Breunig, A.2    Schauder, R.3    König, H.4
  • 38
    • 0029660418 scopus 로고    scopus 로고
    • Seasonal variation in nitrogen fixation (acetylene reduction) and sulphate reduction rates in the rhizosphere of Zostera noltii: Nitrogen fixation by sulphate reducing bacteria
    • Welsh, D.T., Bourguès, S., Herbert, R.A., and De Wit, R. (1996) Seasonal variation in nitrogen fixation (acetylene reduction) and sulphate reduction rates in the rhizosphere of Zostera noltii: nitrogen fixation by sulphate reducing bacteria. Mar Biol 125: 619-628.
    • (1996) Mar Biol , vol.125 , pp. 619-628
    • Welsh, D.T.1    Bourguès, S.2    Herbert, R.A.3    De Wit, R.4
  • 39
    • 0000797814 scopus 로고    scopus 로고
    • Effect of plant photosynthesis, carbon sources and ammonium availability on nitrogen fixation in the rhizosphere of Zostera noltii
    • Welsh, D.T., Bourguès, S., De Wit, R., and Auby, I. (1997) Effect of plant photosynthesis, carbon sources and ammonium availability on nitrogen fixation in the rhizosphere of Zostera noltii. Aquat Microb Ecol 12: 285-290.
    • (1997) Aquat Microb Ecol , vol.12 , pp. 285-290
    • Welsh, D.T.1    Bourguès, S.2    De Wit, R.3    Auby, I.4
  • 40
    • 0001614967 scopus 로고
    • The dissimilatory sulfate- and sulfur-reducing bacteria
    • Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K. H, (eds). New York: Springer-Verlag
    • Widdel, F., and Hansen, T.A. (1991) The dissimilatory sulfate- and sulfur-reducing bacteria. In The Prokaryotes. Vol. 1, Balows, A., Trüper, H.G., Dworkin, M., Harder, W., and Schleifer, K. H, (eds). New York: Springer-Verlag, pp. 583-624.
    • (1991) The Prokaryotes , vol.1 , pp. 583-624
    • Widdel, F.1    Hansen, T.A.2
  • 42
    • 0036151759 scopus 로고    scopus 로고
    • Identification of a bacterium that specifically catalyzes the reductive dechlorination of polychlorinated biphenyls with doubly flanked chlorines
    • Wu, Q., Watts, J.E., Sowers, K.R., and May, H. (2002) Identification of a bacterium that specifically catalyzes the reductive dechlorination of polychlorinated biphenyls with doubly flanked chlorines. Appl Environ Microbiol 68: 807-812.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 807-812
    • Wu, Q.1    Watts, J.E.2    Sowers, K.R.3    May, H.4


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