A comparative analysis of two cDNA clones of the cellulase gene family from anaerobic fungus Piromyces rhizinflata

Anaerobe

Volumn 9, Issue 3, 2003, Pages 131-140

  Tsai, Cheng Fang ^a,c   Qiu, Xiao ^a,d   Liu, Jin Hao ^a,b  

^a AGRICULTURAL BIOTECHNOLOGY RESEARCH CENTER   (Taiwan)

^b INSTITUTE FOR RESEARCH IN IMMUNOLOGY AND CANCER   (Canada)

^c ASIA UNIVERSITY   (Taiwan)

^d Bioriginal Food and Science Corporation   (Canada)

Author keywords

Cellulase clones; Endoglucanase; Expression; Rumimal fungus

Indexed keywords

BETA GLUCAN; CARBOXYMETHYLCELLULOSE; GLUCAN SYNTHASE; MICROCRYSTALLINE CELLULOSE; PROTEIN; PROTEIN CEL5B; PROTEIN CEL6A; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CONTROLLED STUDY; DNA DETERMINATION; DNA LIBRARY; DNA SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PIROMYCES; PIROMYCES RHIZINFLATA; PRIORITY JOURNAL; RUMEN MICROORGANISM; SEQUENCE HOMOLOGY; UNINDEXED SEQUENCE;

FUNGI; HORDEUM VULGARE SUBSP. VULGARE; PIROMYCES RHIZINFLATA; PIROMYCES RHIZINFLATUS; TRITICUM AESTIVUM SUBSP. SPELTA;

EID: 0042661226     PISSN: 10759964     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1075-9964(03)00087-8     Document Type: Article

References (29)

1. Teunissen M.J., de Kort G.V., Op den Camp H.J., Huis in't Veld J.H. Production of cellulolytic and xylanolytic enzymes during growth of the anaerobic fungus Piromyces sp. on different substrates. J Gen Microbiol. 138:1992;1657-1664.
2. Dijkerman R., Op den Camp H.J.M., van der Drift C. Cultivation of anaerobic fungi in a 10-1 fermenter system for the production of (hemi)cellulolytic enzymes. Appl Microbiol Biotechnol. 46:1996;85-91.
3. Ali B.R.S., Zhou L., Graves F.M., Freedman R.B., Black G.W., Gilbert H.J., Hazlewood G.P. Cellulases and hemicellulases of the anaerobic fungus Piromyces constitute a multiprotein cellulose-binding complex and are encoded by multigene families. FEMS Microbiol Lett. 125:1995;15-22.
4. Selinger L.B., Forsberg C.W., Cheng K-.J. The rumen. a unique source of enzymes for enhancing livestock production Anaerobe. 2:1996;263-284.
5. Eberhardt R.Y., Gilbert H.J., Hazlewood G.P. Primary sequence and enzymic properties of two modular endoglucanases, Cel5A and Cel45A, from the anaerobic fungus Piromyces equi. Microbiology. 146:2000;1999-2008.
6. Zhou L., Xue G-.P., Orpin C.G., Black G.W., Gilbert H.J., Hazlewood G.P. Intronless celB from the anaerobic fungus Neocallimastix patriciarum encodes a modular family A endoglucanase. Biochem J. 297:1994;359-364.
7. Fanutti C., Ponyi T., Black G.W., Hazlewood G.P., Gilbert H.J. The conserved noncatalytic 40-residue sequence in cellulases and hemicellulases from anaerobic fungi functions as a protein docking domain. J Biol Chem. 270:1995;29314-29322.
8. Durand R., Rascle C., Fevre M. Molecular characterization of xyn3, a member of the endoxylanase multigene family of the rumen anaerobic fungus Neocallimastix frontalis. Curr Genet. 30:1996;531-540.
9. Millward-Sadler S.J., Hall J., Black G.W., Hazlewood G.P., Gilbert H.J. Evidence that Piromyces gene family encoding endo-1,4-mannanases arose through gene duplication. FEMS Microbiol Lett. 241:1996;183-188.
10. Dalrymple B.P., Cybinski D.H., Layton I., McSweeney C.S., Xue G.P., Swadling Y.J., Lowry J.B. Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases. Microbiology. 143:1997;2605-2614.
11. Li X.L., Chen H., Ljungdahl L.G. Monocentric and polycentric anaerobic fungi produce structurally related cellulases and xylanases. Appl Environ Microbiol. 63:1997;628-635.
12. Li X-.L., Chen H., Ljungdahl L.G. Two cellulases, CelA and CelC, from the polycentric anaerobic fungus Orpinomyces strain PC-2 contain N-terminal docking domains for a cellulase-hemicellulase complex. Appl Environ Microbiol. 63:1997;4721-4728.
13. Chen H., Li X.L., Blum D.L., Ljungdahl L.G. Two genes of the anaerobic fungus Orpinomyces sp. Strain PC-2 encoding cellulases with endoglucanase activities may have arisen by gene duplication. FEMS Microbiol Lett. 159:1998;63-68.
14. Fujino Y., Ogata K., Nagamine T., Ushida K. Cloning, sequencing, and expression of an endoglucanase gene from the rumen anaerobic fungus Neocallimastix frontalis MCH3. Biosci Biotechnol Biochem. 62:1998;1795-1798.
15. Qiu X., Selinger B., Yanke L.J., Cheng K-.J. Isolation and analysis of two cellulase cDNAs from Orpinomyces joyonii. Gene. 245:2000;119-126.
16. Black G.W., Hazlewood G.P., Xue G.P., Orpin C.G., Gilbert H.J. Xylanase B from Neocallimastix patriciarum contains a non-catalytic 455-residue linker sequence comprised of 57 repeats of an octopeptide. Biochem J. 299:1994;381-387.
17. Liu J-.H., Selinger L.B., Tsai C-.F., Cheng K-.J. Characterization of a Neocallimastix patriciarum xylanase gene and its product. Can J Microbiol. 45:1999;970-974.
18. Liu J-.H., Selinger L.B., Hu Y-.J., Moloney M.M., Cheng K-.J., Beauchemin K.A. An endoglucanase from the anaerobic fungus Orpinomyces joyonii. characterization of the gene and its product Can J Microbiol. 43:1997;477-485.
19. Denman S., Xue G-.P., Patel B. Charaterization of a Neocallimastix patriciarum cellulase cDNA (celA) homologous to Trichoderma reesei cellobiohydrolase II. Appl Environ Microbiol. 62:1996;1889-1896.
20. Liu J-.H., Tsai C-.F., Liu J-.W., Cheng K-.J., Cheng C-.L. The catalytic domain of a Piromyces rhizinflata cellulase expressed in Escherichia coli was stabilized by the linker peptide of the enzyme. Enzyme Microbiol Technol. 28:2001;582-589.
21. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J Mol Biol. 215:1990;403-410.
22. Aylward J.H., Gobius K.S., Xue, G-P, Simpson GD, Dalrymple B.P. The Neocallimastix patriciarum cellulase, CelD, contains three almost identical catalytic domains with high specific activities on Avicel. Enzyme Microb Technol. 24:1999;609-614.
23. von Heijne G. A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 14:1986;4683-4690.
24. Henrissat B., Bairoch A. New families in the classification of glycosyl hydrolases based on amino acid sequences similarities. Biochem J. 293:1993;781-788.
25. Tomme P., van Tilberugh H., Petterson G., van Damme J., Vandekerckhove J., Knowles J., Teeri T., Claeyssens M. Studies of the cellulolytic system of Trichoderma reesei QM9414. Analysis of domain function in two cellobiohydrolases by limited proteolysis. Eur J Biochem. 170:1988;575-581.
26. El-Gogary S., Leite A., Crivellaro O., Everleigh D.E., El-dorry H. Mechanism by which cellulose triggers cellobiohydrolase I gene expression in Trichoderma reesei. Proc Natl Acad Sci USA. 86:1989;6138-6141.
27. Steenbakkers P.J.M., Ubhayasekera W., Goossen H.J.A.M., van Lierop E.M.H.M., van der Drift C., Vogels G.D., Mowbray S.L., Op den Camp H.J.M. An intron-containing glycoside hydrolase family cellulase encodes the dominant 90. kDa component of the cellulosome of the anaerobic fungus Piromyces sp. Strain E Biochem J. 365:2002;193-204.
28. Steenbakkers P.J., Freelove A., Van Cranenbroek B., Sweegers B.M., Harhangi H.R., Vogels G.D., Hazlewood G.P., Gilbert H.J., Op den Camp H.J. The major component of the cellulosomes of anaerobic fungi from the genus Piromyces is a family glycoside hydrolase. DNA Seq. 13:2002;313-320.
29. Garcia-Vallvé S., Romeu A., Palau J. Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol Biol Evol. 17:2000;352-361.