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Volumn 45, Issue 3, 2003, Pages 283-292

Quantification of ectomycorrhizal mycelium in soil by real-time PCR compared to conventional quantification techniques

Author keywords

Cloning; Denaturing gradient gel electrophoresis; Ectomycorrhizal fungus; Hyphal length; Molecular quantification; Mycelium; Phospholipid fatty acid; Quantitative polymerase chain reaction; rDNA

Indexed keywords

BIOMASS; ECTOMYCORRHIZA; FUNGUS; POLYMERASE CHAIN REACTION; QUANTITATIVE ANALYSIS; SOIL MICROORGANISM;

EID: 0042564541     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(03)00163-6     Document Type: Article
Times cited : (79)

References (30)
  • 1
    • 0034843854 scopus 로고    scopus 로고
    • The molecular revolution in ectomycorrhizal ecology: Peeking into the black-box
    • Horton T.R., Bruns T.D. The molecular revolution in ectomycorrhizal ecology: peeking into the black-box. Mol. Ecol. 10:2001;1855-1871.
    • (2001) Mol. Ecol. , vol.10 , pp. 1855-1871
    • Horton, T.R.1    Bruns, T.D.2
  • 2
    • 0034945750 scopus 로고    scopus 로고
    • Exploration types of ectomycorrhizae - A proposal to classify ectomycorrhizal mycelial systems according to their patterns of differentiation and putative ecological importance
    • Agerer R. Exploration types of ectomycorrhizae - A proposal to classify ectomycorrhizal mycelial systems according to their patterns of differentiation and putative ecological importance. Mycorrhiza. 11:2001;107-114.
    • (2001) Mycorrhiza , vol.11 , pp. 107-114
    • Agerer, R.1
  • 3
    • 0036562904 scopus 로고    scopus 로고
    • Investigation of the influence of prescribed burning on ITS profiles of ectomycorrhizal and other soil fungi at three Australian sclerophyll forest sites
    • Chen D.M., Cairney J.W.G. Investigation of the influence of prescribed burning on ITS profiles of ectomycorrhizal and other soil fungi at three Australian sclerophyll forest sites. Mycol. Res. 106:2002;532-540.
    • (2002) Mycol. Res. , vol.106 , pp. 532-540
    • Chen, D.M.1    Cairney, J.W.G.2
  • 4
    • 0036905074 scopus 로고    scopus 로고
    • Vertical niche differentiation of ectomycorrhizal hyphae in soil as shown by T-RFLP analysis
    • Dickie I.A., Xu B., Koide R.T. Vertical niche differentiation of ectomycorrhizal hyphae in soil as shown by T-RFLP analysis. New Phytol. 156:2002;527-535.
    • (2002) New Phytol. , vol.156 , pp. 527-535
    • Dickie, I.A.1    Xu, B.2    Koide, R.T.3
  • 6
    • 0036729772 scopus 로고    scopus 로고
    • 2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis
    • 2 on the fungal community in a coastal scrub oak forest soil investigated with terminal-restriction fragment length polymorphism analysis. Appl. Environ. Microbiol. 68:2002;4370-4376.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 4370-4376
    • Klamer, M.1    Roberts, M.S.2    Levine, L.H.3    Drake, B.G.4    Garland, J.L.5
  • 7
    • 0036889669 scopus 로고    scopus 로고
    • Spatial distribution of the below-ground mycelia of an ectomycorrhizal fungus inferred from specific quantification of its DNA in soil samples
    • Guidot A., Debaud J.C., Marmeisse R. Spatial distribution of the below-ground mycelia of an ectomycorrhizal fungus inferred from specific quantification of its DNA in soil samples. FEMS Microbiol. Ecol. 42:2002;477-486.
    • (2002) FEMS Microbiol. Ecol. , vol.42 , pp. 477-486
    • Guidot, A.1    Debaud, J.C.2    Marmeisse, R.3
  • 8
    • 0030923181 scopus 로고    scopus 로고
    • Seasonal variation in protein, ergosterol and chitin in five morphotypes of Pinus sylvestris L. ectomycorrhizae in a mature Swedish forest
    • Wallander H., Massicotte H.B., Nylund J.E. Seasonal variation in protein, ergosterol and chitin in five morphotypes of Pinus sylvestris L. ectomycorrhizae in a mature Swedish forest. Soil Biol. Biochem. 29:1997;45-53.
    • (1997) Soil Biol. Biochem. , vol.29 , pp. 45-53
    • Wallander, H.1    Massicotte, H.B.2    Nylund, J.E.3
  • 9
    • 0031806188 scopus 로고    scopus 로고
    • Chitin and ergosterol combined to measure total and living fungal biomass in ectomycorrhizas
    • Ekblad A., Wallander H., Nasholm T. Chitin and ergosterol combined to measure total and living fungal biomass in ectomycorrhizas. New Phytol. 138:1998;143-149.
    • (1998) New Phytol. , vol.138 , pp. 143-149
    • Ekblad, A.1    Wallander, H.2    Nasholm, T.3
  • 10
    • 0032797197 scopus 로고    scopus 로고
    • Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil
    • Olsson P.A. Signature fatty acids provide tools for determination of the distribution and interactions of mycorrhizal fungi in soil. FEMS Microbiol. Ecol. 29:1999;303-310.
    • (1999) FEMS Microbiol. Ecol. , vol.29 , pp. 303-310
    • Olsson, P.A.1
  • 11
    • 0034900092 scopus 로고    scopus 로고
    • Do nutrient additions alter carbon sink strength of ectomycorrhizal fungi?
    • Bidartondo M.I., Ek H., Wallander H., Söderström B. Do nutrient additions alter carbon sink strength of ectomycorrhizal fungi? New Phytol. 151:2001;543-550.
    • (2001) New Phytol. , vol.151 , pp. 543-550
    • Bidartondo, M.I.1    Ek, H.2    Wallander, H.3    Söderström, B.4
  • 12
    • 0031460020 scopus 로고    scopus 로고
    • The influence of nitrogen fertilization on the carbon economy of Paxillus involutus in ectomycorrhizal association with Betula pendula
    • Ek H. The influence of nitrogen fertilization on the carbon economy of Paxillus involutus in ectomycorrhizal association with Betula pendula. New Phytol. 135:1997;133-142.
    • (1997) New Phytol. , vol.135 , pp. 133-142
    • Ek, H.1
  • 13
    • 0034861052 scopus 로고    scopus 로고
    • Estimation of the biomass and seasonal growth of external mycelium of ectomycorrhizal fungi in the field
    • Wallander H., Nilsson L.O., Hagerberg D., Bååth E. Estimation of the biomass and seasonal growth of external mycelium of ectomycorrhizal fungi in the field. New Phytol. 151:2001;753-760.
    • (2001) New Phytol. , vol.151 , pp. 753-760
    • Wallander, H.1    Nilsson, L.O.2    Hagerberg, D.3    Bååth, E.4
  • 14
    • 0034932974 scopus 로고    scopus 로고
    • Conventional PCR and real-time quantitative PCR detection of Helminthosporium solani in soil and on potato tubers
    • Cullen D.W., Lees A.K., Toth I.K., Duncan J.M. Conventional PCR and real-time quantitative PCR detection of Helminthosporium solani in soil and on potato tubers. Eur. J. Plant Pathol. 107:2001;387-398.
    • (2001) Eur. J. Plant Pathol. , vol.107 , pp. 387-398
    • Cullen, D.W.1    Lees, A.K.2    Toth, I.K.3    Duncan, J.M.4
  • 15
    • 0037046287 scopus 로고    scopus 로고
    • Quantitative analysis of phytopathogenic ascomycota on leaves of pedunculate oaks (Quercus robur L.) by real-time PCR
    • Heuser T., Zimmer W. Quantitative analysis of phytopathogenic ascomycota on leaves of pedunculate oaks (Quercus robur L.) by real-time PCR. FEMS Microbiol. Lett. 209:2002;295-299.
    • (2002) FEMS Microbiol. Lett. , vol.209 , pp. 295-299
    • Heuser, T.1    Zimmer, W.2
  • 16
    • 0000533605 scopus 로고
    • The influence of ectotrophic mycorrhizal fungi on resistance of pine roots to pathogenic infections. I. Antagonism of mycorrhizal fungi to root pathogenic fungi and soil bacteria
    • Marx D.H. The influence of ectotrophic mycorrhizal fungi on resistance of pine roots to pathogenic infections. I. Antagonism of mycorrhizal fungi to root pathogenic fungi and soil bacteria. Phytopathology. 59:1969;153-163.
    • (1969) Phytopathology , vol.59 , pp. 153-163
    • Marx, D.H.1
  • 17
    • 85024774607 scopus 로고
    • Nutrition and growth of coniferous seedlings at varied relative nitrogen addition rate
    • Ingestad T., Kähr M. Nutrition and growth of coniferous seedlings at varied relative nitrogen addition rate. Physiol. Plant. 65:1985;109-116.
    • (1985) Physiol. Plant. , vol.65 , pp. 109-116
    • Ingestad, T.1    Kähr, M.2
  • 18
    • 0032741118 scopus 로고    scopus 로고
    • Short-term phosphorus uptake rates in mycorrhizal and non-mycorrhizal roots of intact Pinus sylvestris seedlings
    • Colpaert J.V., van Tichelen K.K., van Assche J.A., Van Laere A. Short-term phosphorus uptake rates in mycorrhizal and non-mycorrhizal roots of intact Pinus sylvestris seedlings. New Phytol. 143:1999;589-597.
    • (1999) New Phytol. , vol.143 , pp. 589-597
    • Colpaert, J.V.1    Van Tichelen, K.K.2    Van Assche, J.A.3    Van Laere, A.4
  • 19
    • 0029661048 scopus 로고    scopus 로고
    • Carbon and nitrogen allocation in ectomycorrhizal and non-mycorrhizal Pinus sylvestris L. seedlings
    • Colpaert J.V., Van Laere A., Van Assche J.A. Carbon and nitrogen allocation in ectomycorrhizal and non-mycorrhizal Pinus sylvestris L. seedlings. Tree Physiol. 16:1996;787-793.
    • (1996) Tree Physiol. , vol.16 , pp. 787-793
    • Colpaert, J.V.1    Van Laere, A.2    Van Assche, J.A.3
  • 20
    • 0002206089 scopus 로고
    • Microscopic methods for counting bacteria and fungi in soil
    • Alef, K. and Nannipieri, P., Eds. Academic Press, New York
    • Bloem, J., Bolhuis, P.R., Veninga, M.R. and Wieringa, J. (1995) Microscopic methods for counting bacteria and fungi in soil. In: Methods in Applied Soil Microbiology and Biochemistry (Alef, K. and Nannipieri, P., Eds.), pp. 162-191. Academic Press, New York.
    • (1995) Methods in Applied Soil Microbiology and Biochemistry , pp. 162-191
    • Bloem, J.1    Bolhuis, P.R.2    Veninga, M.R.3    Wieringa, J.4
  • 21
    • 0002952229 scopus 로고    scopus 로고
    • The determination of microbial biomass
    • Robertson, G.P., Coleman, D.C., Bledsoe, C.S. and Sollins, P., Eds. Oxford University Press, New York
    • Paul, E.A., Harris, D., Klug, M. and Ruess, R. (1999) The determination of microbial biomass. In: Standard Soil Methods for Long-Term Ecological Research (Robertson, G.P., Coleman, D.C., Bledsoe, C.S. and Sollins, P., Eds.), pp. 291-317. Oxford University Press, New York.
    • (1999) Standard Soil Methods for Long-Term Ecological Research , pp. 291-317
    • Paul, E.A.1    Harris, D.2    Klug, M.3    Ruess, R.4
  • 22
    • 0032875297 scopus 로고    scopus 로고
    • Structure of the microbial communities in coniferous forest soils in relation to site fertility and stand development stage
    • Pennanen T., Liski J., Bååth E., Kitunen V., Uotila J., Westman C.J., Fritze H. Structure of the microbial communities in coniferous forest soils in relation to site fertility and stand development stage. Microb. Ecol. 38:1999;168-179.
    • (1999) Microb. Ecol. , vol.38 , pp. 168-179
    • Pennanen, T.1    Liski, J.2    Bååth, E.3    Kitunen, V.4    Uotila, J.5    Westman, C.J.6    Fritze, H.7
  • 24
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes - Application to the identification of mycorrhizae and rusts
    • Gardes M., Bruns T.D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol. Ecol. 2:1993;113-118.
    • (1993) Mol. Ecol. , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 27
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • von Wintzingerode F., Gobel U.B., Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:1997;213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Von Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 28
    • 0033771173 scopus 로고    scopus 로고
    • PCR primers that amplify fungal rRNA genes from environmental samples
    • Borneman J., Hartin R.J. PCR primers that amplify fungal rRNA genes from environmental samples. Appl. Environ. Microbiol. 66:2000;4356-4360.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4356-4360
    • Borneman, J.1    Hartin, R.J.2
  • 29
    • 0033670979 scopus 로고    scopus 로고
    • Distribution of microbial biomass and phospholipid fatty acids in Podzol profiles under coniferous forest
    • Fritze H., Pietikainen J., Pennanen T. Distribution of microbial biomass and phospholipid fatty acids in Podzol profiles under coniferous forest. Eur. J. Soil Sci. 51:2000;565-573.
    • (2000) Eur. J. Soil Sci. , vol.51 , pp. 565-573
    • Fritze, H.1    Pietikainen, J.2    Pennanen, T.3
  • 30
    • 0033848231 scopus 로고    scopus 로고
    • Measuring soil microbial community diversity using polar lipid fatty acid and denaturing gradient gel electrophoresis data
    • Hedrick D.B., Peacock A., Stephen J.R., Macnaughton S.J., Brüggemann J., White D.C. Measuring soil microbial community diversity using polar lipid fatty acid and denaturing gradient gel electrophoresis data. J. Microbiol. Methods. 41:2000;235-248.
    • (2000) J. Microbiol. Methods , vol.41 , pp. 235-248
    • Hedrick, D.B.1    Peacock, A.2    Stephen, J.R.3    Macnaughton, S.J.4    Brüggemann, J.5    White, D.C.6


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