Identification of H. pylori strain specific DNA sequences between two clinical isolates from NUD and gastric ulcer by SSH

World Journal of Gastroenterology

Volumn 9, Issue 8, 2003, Pages 1747-1751

  Han, Feng Chan ^a   Gong, Min ^a   Ng, Han Chong ^a   Ho, Bow ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA FRAGMENT; REPLICATION PROTEIN A; THYMIDINE KINASE;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; BACTERIAL STRAIN; BACTERIUM COLONY; BACTERIUM CULTURE; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA SEQUENCE; DYSPEPSIA; GENETIC SCREENING; GENOME; HELICOBACTER PYLORI; HUMAN; HYBRIDIZATION; MOLECULAR PROBE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; STOMACH ULCER;

EID: 0042423427     PISSN: 10079327     EISSN: None     Source Type: Journal    
DOI: 10.3748/wjg.v9.i8.1747     Document Type: Article

References (36)

1. Israel DA, Peek RM. Pathogenesis of Helicobacter pylori-induced gastric inflammation. Aliment Pharmacol Ther 2001; 15: 1271-1290
2. Sanders MK, Peura DA. Helicobacter pylori-associated diseases. Curr Gastroenterol Rep 2002; 4: 448-454
3. Dawsey SM, Mark SD, Taylor PR, Limburg PJ. Gastric cancer and H pylori. Gut 2002; 51: 457-458
4. Blaser MJ. Linking Helicobacter pylori to gastric cancer. Nat Med 2000; 6: 376-377
5. Unger Z, Molnar B, Pronai L, Szaleczky E, Zagoni T, Tulassay Z. Mutant p53 expression and apoptotic activity of Helicobacter pylori positive and negative gastritis in correlation with the presence of intestinal metaplasia. Eur J Gastroenterol Hepatol 2003; 15: 389-393
6. Yang Y, Deng CS, Peng JZ, Wong BC, Lam SK, Xia HH. Effect of Helicobacter pylori on apoptosis and apoptosis related genes in gastric cancer cells. Mol Pathol 2003; 56: 19-24
7. Wang RT, Wang T, Chen K, Wang JY, Zhang JP, Lin SR, Zhu YM, Zhang WM, Cao YX, Zhu CW, Yu H, Cong YJ, Zheng S, Wu BQ. Helicobacter pylori infection and gastric cancer: Evidence from a retrospective cohort study and nested case-control study in China. World J Gastroenterol 2002; 8: 1103-1107
8. Meining A, Riedl B, Stolte M. Features of gastritis predisposing to gastric adenoma and early gastric cancer. J Clin Pathol 2002; 55: 770-773
9. Lan J, Xiong YY, Lin YX, Wang BC, Gong LL, Xu HS, Guo GS. Helicobacter pylori infection generated gastric cancer through p53-Rb tumor-suppressor system mutation and telomerase reactivation. World J Gastroenterol 2003; 9: 54-58
10. Cai L, Yu SZ, Zhang ZF. Helicobacter pylori infection and risk of gastric cancer in Changle County, Fujian Province, China. World J Gastroenterol 2000; 6: 374-376
11. Liu HF, Liu WW, Fang DC, Wang GA, Teng XC. Relationship between Helicobacter pylori infection and gastric precancerous lesions: A follow-up study. Shijie Huaren Xiaohua Zazhi 2002; 10: 912-915
12. Miehlke S, Kirsch C, Dragosics B, Gschwantler M, Oberhuber G, Antos D, Dite P, Lauter J, Labenz J, Leodolter A, Malfertheiner P, Neubauer A, Ehninger G, Stolte M, Bayerdorffer E. Helicobacter pylori and gastric cancer: Current status of the Austrian in Czech German gastric cancer prevention trial (PRISMA Study). World J Gastroenterol 2001; 7: 243-247
13. Yao YL, Xu B, Song YG, Zhang WD. Overexpression of cyclin E in Mongolian gerbil with Helicobacter pylori-induced gastric precancerosis. World J Gastroenterol 2002; 8: 60-63
14. Zhang Z, Yuan Y, Gao H, Dong M, Wang L, Gong YH. Apoptosis, proliferation and p53 gene expression of H. pylori associated gastric epithelial lesions. World J Gastroenterol 2001; 7: 779-782
15. Xue FB, Xu YY, Wang Y, Pan BR, Ren J, Fan DM. Association of H. pylori infection with gastric carcinoma: A meta analysis. World J Gastroenterol 2001; 7: 801-804
16. Liu HF, Liu WW, Fang DC, Wang GA, Teng XC. Effect of Helicobacter pylori infection on bax protein expression in patients with gastric precancerous lesions. Shijie Huaren Xiaohua Zazhi 2003; 11: 22-24
17. Bjorkholm BM, Oh JD, Falk PG, Engstrand LG, Gordon JI. Genomics and proteomics converge on Helicobacter pylori. Curr Opin in Microbiol 2001; 4: 237-245
18. Agron PG, Macht M, Radnedge L, Skowronski EW, Miller W, Andersen GL. Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences. FEMS Microbiology Letters 2002; 211/2: 175-182
19. Salama N, Guillemin K, McDaniel TK, Sherlock G, Tompkins L, Falkow S. A whole genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl Acad Sci U S A 2000; 97: 14668-14673
20. Blaser MJ, Berg DE. Helicobacter pylori genetic diversity and risk of human disease. J Clin Invest 2001; 107: 767-773
21. Israel MJ, Salama N, Arnold CN, Moss SF, Ando T, Wirth HP, Tham KT, Camorlinga M, Blaser MJ, Falkow S, Peek RM Jr. Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses. J Clin Invest 2001; 107: 611-620
22. Shibata A, Parsonnet J, Longacre TA, Garcia MI, Puligandla B, Davis RE, Vogelman JH, Orentreich N, Habel LA. CagA status of Helicobacter pylori infection and p53 gene mutations in gastric adenocarcinoma. Carcinogenesis 2002; 23: 419-424
23. Kersulyte D, Velapatino B, Dailide G, Mukhopadhyay AK, Ito Y, Cahuayme L, Parkinson AJ, Gilman RH, Berg DE. Transposable element ISHp608 of Helicobacter pylori: Nonrandom geographic distribution, functional organization, and insertion specificity. J Bacteriol 2002; 184: 992-1002
24. Kersulyte D, Mukhopadhyay AK, Shirai M, Nakazawa T, Berg DE. Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori. J Bacteriol 2000; 182: 5300-5308
25. Hua JS, Zheng PY, Fong TK, Mar KM, Bow H. Helicobacter pylori acquisition of metronidazole resistance by natural transformation in vitro. World J Gastroenterol 1998; 4: 385-387
26. Suerbaum S. Genetic variability within Helicobacter pylori. Int J Med Microbiol 2000; 290: 175-181
27. Yakoob J, Hu GL, Fan XG, Yang HX, Liu SH, Tan DM, Li TG, Zhang Z. Diversity of Helicobacter pylori among Chinese persons with H. pylori infection. APMIS 2000; 108: 482-486
28. Israel DA, Salama N, Krishna U, Rieger UM, Atherton JC, Falkow S, Peek RM Jr. Helicobacter pylori genetic diversity within the gastric niche of a single human host. Proc Natl Acad Sci U S A 2001; 98: 14625-14630
29. Nobusato A, Uchiyama I, Kobayashi I. Diversity of restriction-modification gene homologues in Helicobacter pylori. Gene 2000; 259: 89-98
30. Tomasini ML, Zanussi S, Sozzi M, Tedeschi R, Basaglia G, De Paoli P. Heterogeneity of cag genotypes in Helicobacter pylori isolates from human biopsy specimens. J Clin Microbiol 2003; 41: 976-980
31. Ji WS, Hu JL, Qiu JW, Peng DR, Shi BL, Zhou SJ, Wu KC, Fan DM. Polymorphism of flagellin A gene in Helicobacter pylori. World J Gastroenterol 2001; 7: 783-787
32. Pride DT, Meinersmann RJ, Blaser MJ. Allelic variation within Helicobacter pylori babA and babB. Infect Immun 2001; 69: 1160-1171
33. Azuma T, Yamakawa A, Yamazaki S, Fukuta K, Ohtani M, Ito Y, Dojo M, Yamazaki Y, Kuriyama M. Correlation between variation of the 3′ region of the cagA gene in Helicobacter pylori and disease outcome in Japan. J Infect Dis 2002; 186: 1621-1630
34. Nobusato A, Uchiyama I, Ohashi S, Kobayashi I. Insertion with long target duplication: A mechanism for gene mobility suggested from comparison of two related bacterial genomes. Gene 2000; 259: 99-108
35. Hofreuter D, Haas R. Characterization of two cryptic Helicobacter pylori plasmids: A putative source for horizontal gene transfer and gene shuffling. J Bacteriol 2002; 184: 2755-2766
36. Hosaka Y, Okamoto R, Irinoda K, Kaieda S, Koizumi W, Saigenji K, Inoue M. Characterization of pKU701, a 2.5-kb plasmid, in a Japanese Helicobacter pylori isolate. Plasmid 2002; 47: 193-200