Use of subtractive hybridization for comprehensive surveys of prokaryotic genome differences

FEMS Microbiology Letters

Volumn 211, Issue 2, 2002, Pages 175-182

  Agron, Peter G ^a   Macht, Madison ^a   Radnedge, Lyndsay ^a   Skowronski, Evan W ^a   Miller, Webb ^b   Andersen, Gary L ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

^b The Center for Nanotechnology Education and Utilization   (United States)

Author keywords

Bacterial genome; Comparative genomics; Helicobacter pylori; Subtractive hybridization

Indexed keywords

BACTERIAL ENZYME; RESTRICTION ENDONUCLEASE;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ANALYSIS; GENOMICS; HELICOBACTER PYLORI; HYBRIDIZATION; MICROBIAL DIVERSITY; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; PROKARYOTE; SEQUENCE ANALYSIS; SPECIES DIFFERENTIATION; STRAIN DIFFERENCE; THEORETICAL MODEL;

DNA RESTRICTION ENZYMES; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; HELICOBACTER PYLORI; MUTATION; NUCLEIC ACID HYBRIDIZATION; OPEN READING FRAMES; PROKARYOTIC CELLS;

BACTERIA (MICROORGANISMS); HELICOBACTER; HELICOBACTER PYLORI; PROKARYOTA;

EID: 0037018878     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(02)00650-X     Document Type: Article

References (29)

1. Identification of a Burkholderia mallei polysaccharide gene cluster by subtractive hybridization and demonstration that the encoded capsule is an essential virulence determinant
2. Analysis of the genetic differences between Neisseria meningitidis and Neisseria gonorrhoeae: Two closely related bacteria expressing two different pathogenicities
3. Genomic subtraction identifies Salmonella typhimurium prophages, F-related plasmid sequences, and a novel fimbrial operon, stf, which are absent in Salmonella typhi
4. Comparative genomics of the restriction-modification systems in Helicobacter pylori
5. Identification by subtractive hybridization of sequences specific for Salmonella enterica serovar Enteritidis
6. Identification of nucleotide sequences for the specific and rapid detection of Yersinia pestis
7. Development of PCR assays for species- and type-specific identification of Pasteurella multocida isolates
8. Identification by subtractive hybridization of a novel insertion sequence specific for virulent strains of Porphyromonas gingivalis
9. Comparing genomes within the species Mycobacterium tuberculosis
10. Comparative genomics of BCG vaccines by whole-genome DNA microarray
11. DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes
12. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
13. The complete genome sequence of Escherichia coli K-12
14. Genome sequence of enterohaemorrhagic Escherichia coli O157:H7
15. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
16. The complete genome sequence of the gastric pathogen Helicobacter pylori
17. Cloning the differences between two complex genomes
18. PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori
19. Genomic subtraction for cloning DNA corresponding to deletion mutations
20. Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries
21. Magnetic microplate-format plasmid isolation protocol for high-yield, sequencing grade DNA
22. Consed: A graphical tool for sequence finishing
23. PipMaker - a web server for aligning two genomic DNA sequences
24. Evolution of Helicobacter pylori: The role of recombination
25. Restriction-site PCR: A direct method of unknown sequence retrieval adjacent to a known locus by using universal primers
26. Vectorette PCR: A novel approach to genomic walking
27. Amelioration of bacterial genomes: Rates of change and exchange
28. Identification and localization of differences between Escherichia coli and Salmonella typhimurium genomes by suppressive subtractive hybridization
29. Mirror orientation selection (MOS): A method for eliminating false positive clones from libraries generated by suppression subtractive hybridization