-
1
-
-
0002759539
-
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
-
Bailey, T. L. and Elkan, C. (1995). Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Machine Learning 21, 51-80.
-
(1995)
Machine Learning
, vol.21
, pp. 51-80
-
-
Bailey, T.L.1
Elkan, C.2
-
2
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F. R., Plunkett, G. 3rd, Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., Gregor, J., Davis, N. W., Kirkpatrick, H. A., Goeden, M. A., Rose, D. J., Mau, B. and Shao, Y. (1997). The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett G. III2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
Gregor, J.11
Davis, N.W.12
Kirkpatrick, H.A.13
Goeden, M.A.14
Rose, D.J.15
Mau, B.16
Shao, Y.17
-
3
-
-
0042357843
-
Computer analysis of glycerol-3-phosphate metabolism regulation in proteobacterial genomes
-
in press
-
Danilova, L. V., Gelfand, M. S., Lyubetsky, V. A. and Laikova, O. N. (2003). Computer analysis of glycerol-3-phosphate metabolism regulation in proteobacterial genomes. Mol. Biol., in press.
-
(2003)
Mol. Biol.
-
-
Danilova, L.V.1
Gelfand, M.S.2
Lyubetsky, V.A.3
Laikova, O.N.4
-
4
-
-
0035497842
-
Algorithm of regulatory signal recognition in DNA sequences
-
(in Russian)
-
Danilova, L. V., Gorbunov, K. Y., Gelfand, M. S. and Lyubetsky, V. A. (2001). Algorithm of regulatory signal recognition in DNA sequences. Mol. Biol. 35, 987-995. (in Russian).
-
(2001)
Mol. Biol.
, vol.35
, pp. 987-995
-
-
Danilova, L.V.1
Gorbunov, K.Y.2
Gelfand, M.S.3
Lyubetsky, V.A.4
-
5
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J. F., Dougherty, B. A., Merrick, J. M., McKenney, K., Sutton, G., FitzHugh, W., Fields, C., Gocayne, J. D., Scott, J., Shirley, R., Liu, L., Glodek, A., Kelley, J. M., Weidman, J. F., Phillips, C. A., Spriggs, T., Hedblom, E., Cotton, M. D., Utterback, T. R., Hanna, M. C., Nguyen, D. T., Saudek, D. M., Brandon, R. C., Fine, L. D., Fritchman, J. L., Fuhrmann, J. L., Geoghagen, N. S. M., Gnehm, C. L., McDonald, L. A., Small, K. V., Fraser, C. M., Smith, H. O. and Venter, J. C. (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
Kerlavage, A.R.6
Bult, C.J.7
Tomb, J.F.8
Dougherty, B.A.9
Merrick, J.M.10
McKenney, K.11
Sutton, G.12
FitzHugh, W.13
Fields, C.14
Gocayne, J.D.15
Scott, J.16
Shirley, R.17
Liu, L.18
Glodek, A.19
Kelley, J.M.20
Weidman, J.F.21
Phillips, C.A.22
Spriggs, T.23
Hedblom, E.24
Cotton, M.D.25
Utterback, T.R.26
Hanna, M.C.27
Nguyen, D.T.28
Saudek, D.M.29
Brandon, R.C.30
Fine, L.D.31
Fritchman, J.L.32
Fuhrmann, J.L.33
Geoghagen, N.S.M.34
Gnehm, C.L.35
McDonald, L.A.36
Small, K.V.37
Fraser, C.M.38
Smith, H.O.39
Venter, J.C.40
more..
-
6
-
-
0033374594
-
Recognition of regulatory sites by genomic comparison
-
Gelfand, M. S. (1999). Recognition of regulatory sites by genomic comparison. Res. Microbiol. 150, 755-771.
-
(1999)
Res. Microbiol.
, vol.150
, pp. 755-771
-
-
Gelfand, M.S.1
-
7
-
-
0034141782
-
Prediction of transcription regulatory sites in archaea by a comparative genomic approach
-
Gelfand, M. S., Koonin, E. V. and Mironov, A. A. (2000). Prediction of transcription regulatory sites in archaea by a comparative genomic approach. Nucleic Acids Res. 28, 695-705.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 695-705
-
-
Gelfand, M.S.1
Koonin, E.V.2
Mironov, A.A.3
-
8
-
-
0035961748
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12
-
Hayashi, T., Makino, K., Ohnishi, M., Kurokawa, K., Ishii, K., Yokoyama, K., Han, C. G., Ohtsubo, E., Nakayama, K., Murata, T., Tanaka, M., Tobe, T., Iida, T., Takami, H., Honda, T., Sasakawa, C., Ogasawara, N., Yasunaga, T., Kuhara, S., Shiba, T., Hattori, M. and Shinagawa, H. (2001). Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. DNA Res. 8, 11-22.
-
(2001)
DNA Res.
, vol.8
, pp. 11-22
-
-
Hayashi, T.1
Makino, K.2
Ohnishi, M.3
Kurokawa, K.4
Ishii, K.5
Yokoyama, K.6
Han, C.G.7
Ohtsubo, E.8
Nakayama, K.9
Murata, T.10
Tanaka, M.11
Tobe, T.12
Iida, T.13
Takami, H.14
Honda, T.15
Sasakawa, C.16
Ogasawara, N.17
Yasunaga, T.18
Kuhara, S.19
Shiba, T.20
Hattori, M.21
Shinagawa, H.22
more..
-
9
-
-
17144462135
-
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae
-
Heidelberg, J. F., Eisen, J. A., Nelson, W. C., Clayton, R. A., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Umayam, L., Gill, S. R., Nelson, K. E., Read, T. D., Tettelin, H., Richardson, D., Ermolaeva, M. D., Vamathevan, J., Bass, S., Qin, H., Dragoi, I., Seller, P., McDonald, L., Utterback, T., Fleishmann, R. D., Nierman, W. C. and White, O. (2000). DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature 406, 477-483.
-
(2000)
Nature
, vol.406
, pp. 477-483
-
-
Heidelberg, J.F.1
Eisen, J.A.2
Nelson, W.C.3
Clayton, R.A.4
Gwinn, M.L.5
Dodson, R.J.6
Haft, D.H.7
Hickey, E.K.8
Peterson, J.D.9
Umayam, L.10
Gill, S.R.11
Nelson, K.E.12
Read, T.D.13
Tettelin, H.14
Richardson, D.15
Ermolaeva, M.D.16
Vamathevan, J.17
Bass, S.18
Qin, H.19
Dragoi, I.20
Seller, P.21
McDonald, L.22
Utterback, T.23
Fleishmann, R.D.24
Nierman, W.C.25
White, O.26
more..
-
11
-
-
0028092164
-
The arginine repressor of Escherichia coli
-
Maas, W. K. (1994). The arginine repressor of Escherichia coli. Microbiol. Rev. 58, 631-640.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 631-640
-
-
Maas, W.K.1
-
12
-
-
0035853112
-
Complete genomic sequence of Pasteurella multocida, Pm70
-
May, B. J., Zhang, Q., Li, L. L., Paustian, M. L., Whittam, T. S. and Kapur, V. (2001). Complete genomic sequence of Pasteurella multocida, Pm70. Proc. Natl. Acad. Sci. USA 98, 3460-3465.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 3460-3465
-
-
May, B.J.1
Zhang, Q.2
Li, L.L.3
Paustian, M.L.4
Whittam, T.S.5
Kapur, V.6
-
13
-
-
0035950182
-
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2
-
McClelland, M., Sanderson, K. E., Spieth, J., Clifton, S. W., Latreille, P., Courtney, L., Porwollik, S., Ali, J., Dante, M., Du, F., Hou, S., Layman, D., Leonard, S., Nguyen, C., Scott, K., Holmes, A., Grewal, N., Mulvaney, E., Ryan, E., Sun, H., Florea, L., Miller, W., Stoneking, T., Nhan, M., Waterston, R. and Wilson, R. K. (2001). Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 413, 852-856.
-
(2001)
Nature
, vol.413
, pp. 852-856
-
-
McClelland, M.1
Sanderson, K.E.2
Spieth, J.3
Clifton, S.W.4
Latreille, P.5
Courtney, L.6
Porwollik, S.7
Ali, J.8
Dante, M.9
Du, F.10
Hou, S.11
Layman, D.12
Leonard, S.13
Nguyen, C.14
Scott, K.15
Holmes, A.16
Grewal, N.17
Mulvaney, E.18
Ryan, E.19
Sun, H.20
Florea, L.21
Miller, W.22
Stoneking, T.23
Nhan, M.24
Waterston, R.25
Wilson, R.K.26
more..
-
14
-
-
0035253676
-
Phylogenetic footprinting of transcription factor binding site in proteobacterial genomes
-
McCue, L., Thompson, W., Carmack, C. S., Ryan, M. P., Liu, J. S., Derbyshire, V. and Lawrence, C. E. (2001). Phylogenetic footprinting of transcription factor binding site in proteobacterial genomes. Nucleic Acids Res. 29, 774-782.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 774-782
-
-
McCue, L.1
Thompson, W.2
Carmack, C.S.3
Ryan, M.P.4
Liu, J.S.5
Derbyshire, V.6
Lawrence, C.E.7
-
15
-
-
0035807385
-
Genome sequence of Yersinia pestis, the causative agent of plague
-
Parkhill, J., Wren, B. W., Thomson, N. R., Titball, R. W., Holden, M. T., Prentice, M. B., Sebaihia, M., James, K. D., Churcher, C., Mungall, K. L., Baker, S., Basham, D., Bentley S. D., Brooks, K., Cerdeno-Tarraga, A. M., Chillingworth, T., Cronin, A., Davies, R. M., Davis, P., Dougan, G., Feltwell, T., Hamlin, N., Holroyd, S., Jagels, K., Karlyshev, A. V., Leather, S., Moule, S., Oyston, P. C., Quail, M., Rutherford, K., Simmonds, M., Skelton, J., Stevens, K., Whitehead, S. and Barrell, B. G. (2001). 413, 523-527.
-
(2001)
Nature
, vol.413
, pp. 523-527
-
-
Parkhill, J.1
Wren, B.W.2
Thomson, N.R.3
Titball, R.W.4
Holden, M.T.5
Prentice, M.B.6
Sebaihia, M.7
James, K.D.8
Churcher, C.9
Mungall, K.L.10
Baker, S.11
Basham, D.12
Bentley, S.D.13
Brooks, K.14
Cerdeno-Tarraga, A.M.15
Chillingworth, T.16
Cronin, A.17
Davies, R.M.18
Davis, P.19
Dougan, G.20
Feltwell, T.21
Hamlin, N.22
Holroyd, S.23
Jagels, K.24
Karlyshev, A.V.25
Leather, S.26
Moule, S.27
Oyston, P.C.28
Quail, M.29
Rutherford, K.30
Simmonds, M.31
Skelton, J.32
Stevens, K.33
Whitehead, S.34
Barrell, B.G.35
more..
-
16
-
-
0035950154
-
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
-
Parkhill, J., Dougan, G., James, K. D., Thomson, N. R., Pickard, D., Wain, J., Churcher, C., Mungall, K. L., Bentley, S. D., Holden, M. T., Sebaihia, M., Baker, S., Basham, D., Brooks, K., Chillingworth, T., Connerton, P., Cronin, A., Davis, P., Davies, R. M., Dowd, L., White, N., Farrar, J., Feltwell, T., Hamlin, N., Haque, A., Hien, T. T., Holroyd, S., Jagels, K., Krogh, A., Larsen, T. S., Leather, S., Moule, S., O'Gaora, P., Parry, C., Quail, M., Rutherford, K., Simmonds, M., Skelton, J., Stevens, K., Whitehead, S. and Barrell, B. G. (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 413, 848-852.
-
(2001)
Nature
, vol.413
, pp. 848-852
-
-
Parkhill, J.1
Dougan, G.2
James, K.D.3
Thomson, N.R.4
Pickard, D.5
Wain, J.6
Churcher, C.7
Mungall, K.L.8
Bentley, S.D.9
Holden, M.T.10
Sebaihia, M.11
Baker, S.12
Basham, D.13
Brooks, K.14
Chillingworth, T.15
Connerton, P.16
Cronin, A.17
Davis, P.18
Davies, R.M.19
Dowd, L.20
White, N.21
Farrar, J.22
Feltwell, T.23
Hamlin, N.24
Haque, A.25
Hien, T.T.26
Holroyd, S.27
Jagels, K.28
Krogh, A.29
Larsen, T.S.30
Leather, S.31
Moule, S.32
O'Gaora, P.33
Parry, C.34
Quail, M.35
Rutherford, K.36
Simmonds, M.37
Skelton, J.38
Stevens, K.39
Whitehead, S.40
Barrell, B.G.41
more..
-
17
-
-
0026729501
-
WORDUP: An efficient algorithm for discovering statistically significant patterns in DNA sequences
-
Pesole, G., Prunella, N., Liuni, S., Attimonelli, M. and Saccone, C. (1992). WORDUP: An efficient algorithm for discovering statistically significant patterns in DNA sequences. Nucleic Acids Res. 20, 2871-2875.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 2871-2875
-
-
Pesole, G.1
Prunella, N.2
Liuni, S.3
Attimonelli, M.4
Saccone, C.5
-
19
-
-
0032573426
-
A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome
-
Robison, K., McGuire, A. M. and Church, G. M. (1998). A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome. J. Mol. Biol. 284, 241-254.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 241-254
-
-
Robison, K.1
McGuire, A.M.2
Church, G.M.3
-
20
-
-
0024385974
-
Methods for discovering novel motifs in nucleic acid sequences
-
Staden, R. (1989). Methods for discovering novel motifs in nucleic acid sequences. Comput. Appl. Biosci. 5, 293-298.
-
(1989)
Comput. Appl. Biosci.
, vol.5
, pp. 293-298
-
-
Staden, R.1
-
21
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov, R. L., Koonin, E. V. and Lipman, D. J. (1997). A genomic perspective on protein families. Science 278, 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
22
-
-
0035226487
-
Prediction of co-regulated genes in Bacillus subtilts on the basis of upstream elements conserved across three closely related species
-
RESEARCH0048
-
Terai, G., Takagi, T. and Nakai, K. (2001). Prediction of co-regulated genes in Bacillus subtilts on the basis of upstream elements conserved across three closely related species. Genome Biol. 2, RESEARCH0048.
-
(2001)
Genome Biol.
, vol.2
-
-
Terai, G.1
Takagi, T.2
Nakai, K.3
-
24
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
Van Helden, J., Andre, B. and Collado-Vides, J. (1998). Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281, 827-842.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
Van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
25
-
-
0029867505
-
Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm
-
Wolfertstetter, F., Frech, K., Herrmann, G. and Werner, T. (1996). Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm. Comput. Appl. Biosci. 12, 71-80.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 71-80
-
-
Wolfertstetter, F.1
Frech, K.2
Herrmann, G.3
Werner, T.4
|