Inferences from mitochondrial DNA patterns on the domestication history of alfalfa (Medicago sativa)

Molecular Ecology

Volumn 12, Issue 8, 2003, Pages 2187-2199

  Muller, Marie Hélène ^a   Prosperi, J M ^a   Santoni, S ^a   Ronfort, J ^a  

^a CEMAGREF   (France)

Author keywords

Crop weed complexes; Domestication; Gene flow; Medicago sativa; mtDNA variation; Phylogeography

Indexed keywords

CROPS, AGRICULTURAL; DNA, MITOCHONDRIAL; GENETICS, POPULATION; GEOGRAPHY; MEDICAGO SATIVA; POLYMORPHISM, GENETIC; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH;

EMBRYOPHYTA; MEDICAGO; MEDICAGO SATIVA;

EID: 0042206769     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01897.x     Document Type: Article

References (62)

1. Avise JC (1998) The history and purview of phylogeography: a personal reflection. Molecular Ecology, 7, 371-379.
2. Badr A, Müller K, Schäfer-Pregl R et al. (2000) On the origin and domestication history of barley (Hordeum vulgare). Molecular Biology and Evolution, 17, 499-510.
3. Bauchan GR, Hossain MA (1997) Karyotypic analysis of C-banded chromosomes of diploid alfalfa: Medicago sativa ssp. coerulea and ssp. falcata and their hybrid. Journal of Heredity, 88, 533-537.
4. Belkhir K (1999) GENETIX, version 4.0. A Windows Program for Population Genetic Analysis. Laboretoire Génome, Populations, Interactions. CNRS UPR 9060, Université Montpellier II, Montpellier, France.
5. Brubaker CL, Wendel JF (1994) Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs). American Journal of Botany, 81, 1309-1326.
6. Campbell TA, Bao G, Xia ZL (1997) Agronomic evaluation of Medicago ruthenica collected in Inner Mongolia. Crop Science, 37, 599-604.
7. Campbell TA, Xia ZL (2002) Agronomic evaluations of grass and legume forage species collected in the Xinjiang Autonomous. Region of the People's Republic of China and Mongolia. Genetic Resources and Crop Evolution, 49, 295-303.
8. Christiansen-Weniger F, Tarman O (1939) Anatolian lucerne. Herbage Reviews, 7, 59-69.
9. Church MG, Gilbert W (1984) Genomic sequencing. Proceedings of the National Academy of Science USA, 81, 1991-1995.
10. Delgado Enguita I (1996) The lucerne in Spain. Characterization of the cultivated and spontaneous ecotypes. In: The Genus Medicago in the Mediterranean Region: Current Situation and Prospects in Research (eds Genier G, Prosperi JM), pp. 65-70. Ciheam, Hammamet.
11. Desplanque B, Viard F, Bernard J et al. (2000) The linkage disequilibrium between chloroplast DNA and mitochondrial DNA haplotypes in Beta vulgaris ssp. maritima (L.): the usefulness of both genomes for population genetics studies. Molecular Ecology, 9, 141-154.
12. Dewey RE, Levings CS 3rd, Timothy (1986) Novel recombinations in the maize mitochondrial genome produce a unique transcriptional unit in the Texas male-sterile cytoplasm. Cell, 44, 439-449.
13. Dumolin-Lapègue S, Demesure B, Fineschi S, Le Corre V, Petit RJ (1997) Phylogeographic structure of white oaks throughout the European continent. Genetics, 146, 1475-1487.
14. Ellstrand NC, Prentice HC, Hancock JF (1999) Gene flow and introgression from domesticated plants into their wild relatives. Annual Review of Ecology and Systematics, 30, 539-563.
15. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479-491.
16. Forsthoefel NR, Bohnert HJ, Smith SE (1992) Discordant inheritance of mitochondrial and plastid DNA in diverse alfalfa genotypes. Journal of Heredity, 83, 342-345.
17. Frankel OH, Brown AHD, Burdon JJ (1995) The Conservation of Plant Biodiversity. Cambridge University Press, Cambridge.
18. Friesen N, Pollner S, Bachmann K, Blattner FR (1999) RAPDs and noncoding chloroplast DNA reveal a single origin of the cultivated Allium fistulosum from A. altaicum (Alliaceae). American Journal of Botany, 86, 554-562.
19. Golden JL, Bain JF (2000) Phylogeographic patterns and high levels of chloroplast DNA diversity in four Packera (Asteraceae) species in southwestern Alberta. Evolution, 54, 1566-1579.
20. Haouazine N, Pereira de Souza A, Jubier MF et al. (1992) The wheat mitochondrial genome contains an ORF showing sequence homology to the gene encoding the subunit 6 of the NADH-ubiquinone oxidoreductase. Plant Molecular Biology, 20, 395-404.
21. Hendry GW (1923) Alfalfa in history. Journal of the American Society of Agronomy, 15, 171-176.
22. Heun M, Schäfer-Pregl R, Klawan D et al. (1997) Site of einkorn wheat domestication identified by DNA fingerprinting. Science, 278, 1312-1314.
23. Hiesel R, Schobel W, Schuster W, Brennicke A (1987) The cytochrome oxidase subunit I and subunit III genes in Oenothera mitochondria are transcribed from identical promoter sequences. EMBO Journal, 6, 29-34.
24. Jenczewski E, Angevain M, Charrier A et al. (1998) Contrasting patterns of genetic diversity in neutral markers and agromorphological traits in wild and cultivated populations of Medicago sativa L. from Spain. Genetics Selection Evolution, 30, S103-S119.
25. Jenczewski E, Prosperi JM, Ronfort J (1999a) Differentiation between natural and cultivated populations of Medicago sativa (Leguminosae) from Spain: analysis with random amplified polymorphic DNA (RAPD) markers and comparison to allozymes. Molecular Ecology, 8, 1317-1330.
26. Jenczewski E, Prosperi JM, Ronfort J (1999b) Evidence for gene flow between wild and cultivated Medicago sativa (Leguminosae) based on allozyme markers and quantitative traits. American Journal of Botany, 86, 677-687.
27. Julier B (1996) Traditional seed maintenance and origins of the French lucerne landraces. Euphytica, 92, 353-357.
28. Khairallah MM, Adams MW, Sears BB (1990) Mitochondrial DNA polymorphism of Malawian bean lines: further evidence for two major gene pools. Theoretical and Applied Genetics, 80, 753-761.
29. Khairallah MM, Sears BB, Adams MW (1992) Mitochondrial restriction fragment length polymorphisms in wild Phaseaolus vulgaris L. insights on the domestication of the common bean. Theoretical and Applied Genetics, 84, 915-922.
30. Kik C, Samoylov AM, Verbeek WHJ, Van Raamsdonk LWD (1997) Mitochondrial DNA variation and crossability of leek (Allium porrum) and its wild relatives from the Allium ampeloprasum complex. Theoretical and Applied Genetics, 94, 465-471.
31. Lesins KA, Lesins I (1979) Genus Medicago (Leguminosae). A Taxogenetic Study. Dr W. Junk BV Publishers, The Hague.
32. Michaud R, Lehman WF, Rumbaugh MD (1988) World distribution and historical development. In: Alfalfa and Alfalfa Improvement (eds Hanson AA, Barnes DK, Hill RR), pp. 25-91. ASA-CSSA-SSSA, Madison, WI.
33. Muller MH, Prosperi JM, Santoni S, Ronfort J (2001) How mitochondrial DNA diversity can help to understand the dynamics of wild-cultivated complexes. The case of Medicago sativa in Spain. Molecular Ecology, 10, 2753-2763.
34. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
35. Palmer JD (1992) Mitochondrial DNA in plant systematics: applications and limitations. In: Molecular Systematics of Plants (eds Soltis PS, Soltis DE, Doyle JJ), pp. 36-39. Chapman & Hall, London.
36. Petit C, Bretagnolle F, Felber F (1999) Evolutionary consequences of diploid-polyploid hybrid zones in wild species. Trends in Ecology and Evolution, 14, 306-311.
37. Petit RJ, El Mousadik A, Pons O (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12, 844-855.
38. Quiros CF, Bauchan GB (1988) The genus Medicago and the origin of the Medicugo sativa complex. In: Alfalfa and Alfalfa Improvement (eds Hanson AA, Barnes DK, Hill RR), pp. 93-124. ASA-CSSA-SSSA, Madison, WI.
39. Raymond M, Rousset F (1995a) An exact test for population differentiation. Evolution, 49, 1280-1283.
40. Raymond M, Rousset F (1995b) Population genetics software for exact test and ecumenicism. Journal of Heredity, 86, 248-249.
41. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
42. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA (1998) Phylogeographic studies in plants: problems and prospects. Molecular Ecology, 7, 465-474.
43. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, Version 2.000: a Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory. University of Geneva, Switzerland.
44. Schuster W, Brennicke A (1986) Pseudocopies of the ATPase a-subunit gene in Oenothera mitochondria are present on different circular molecules. Molecular and General Genetics, 204, 29-35.
45. Segraves KA, Thompson JN, Soltis PS, Soltis DE (1999) Multiple origins of polyploidy and the geographic structure of Heuchera grossulariifolia. Molecular Ecology, 8, 253-262.
46. Sinclair WT, Morman JD, Ennos RA (1999) The postglacial history of scots pine (Pinus sylvestris L.) in western Europe: evidence from mitochondrial DNA variation. Molecular Ecology, 8, 83-88.
47. Sinskaya EN (1961) Flora of Cultivated Plants of the U.S.S.R. XIII Perennial Leguminous. National Science Foundation, Washington D.C.
48. Small E (1982) Medicago collecting in Turkey. Plant Genetic Newsletters Resources, 49, 11, 12.
49. Small E (1984) Hybridization in the domesticated weed-wild complex. In: Plant Biosystematics (ed. Grant WF), pp. 195-210. Academic Press, Toronto.
50. Small E (1985) Morphological differentiation in Medicago sativa s.1. in relation to ploidy. Canadian Journal of Botany, 63, 1747-1752.
51. Small E, Bauchan GB (1984) Chromosome numbers of the Medicago sativa complex in Turkey. Canadian Journal of Botany, 62, 749-752.
52. Small E, Brookes BS (1984) Taxonomic circumscription and identification in the Medicago sativa-falcata (Alfalfa) continuum. Economic Botany, 38, 83-96.
53. Small E, Jurzysta M, Nozzolillo C (1990) The evolution of hemolytic saponin content in wild and cultivated alfalfa (Medicago sativa, Fabaceae). Economic Botany, 44, 226-235.
54. Soltis DE, Soltis PS (1999) Polyploidy: recurrent formation and genome evolution. Trends in Ecology and Evolution, 14, 348-352.
55. Strauss SH, Hong Y-P, Hipkins VD (1993) High levels of population differentiation for mitochondrial DNA haplotypes in Pinus radiata, muricata, and attenuata. Theoretical and Applied Genetics, 86, 605-611.
56. Taberlet P, Fumagalli L, Wust-Saucy A-G, Cossons J-F (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453-464.
57. Tai TH, Tanksley SD (1990) A rapid and inexpensive method for isolation of total DNA from dehydrated plant tissue. Plant Molecular Biology Report, 8, 297-303.
58. Tsumura Y, Suyama Y (1998) Differentiation of mitochondrial DNA polymorphisms in populations of five Japanese Abies species. Evolution, 52, 1031-1042.
59. Veronesi F, Mariani A, Bingham ET (1986) Unreduced gametes in diploid Medicago and their importance in alfalfa breeding. Theoretical and Applied Genetics, 72, 37-41.
60. Weir BS (1996) Genetic Data Analysis II. Sinauer Associates Inc., Sunderland.
61. Wissinger B, Schuster W, Brennicke A (1991) Trans-splicing in Oenothera mitochondria: nad1 mRNAs are edited in exon and trans-splicing group II intron sequences. Cell, 65, 473-482.
62. Wu J, Krutovskii KV, Strauss SH (1998) Abundant mitochondrial genome diversity, population differentiation and convergent evolution in pines. Genetics, 150, 1605-1614.