Escherichia coli single-stranded DNA-binding protein mediates template recycling during transcription by bacteriophage N4 virion RNA polymerase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 100, Issue 16, 2003, Pages 9250-9255

  Davydova, Elena K ^a   Rothman Denes, Lucia B ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA POLYMERASE; SINGLE STRANDED DNA BINDING PROTEIN;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENETICS; BACTERIOPHAGE; CARBOXY TERMINAL SEQUENCE; COLIPHAGE; DNA BINDING; DNA RNA HYBRIDIZATION; DNA TEMPLATE; DNA TRANSCRIPTION; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; HUMAN; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; PROTEIN FAMILY;

AMINO ACID SEQUENCE; BACTERIOPHAGE N4; BASE SEQUENCE; CROSS-LINKING REAGENTS; DNA; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; DOSE-RESPONSE RELATIONSHIP, DRUG; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; HUMANS; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; MUTATION; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT FUSION PROTEINS; RNA; SEQUENCE HOMOLOGY, AMINO ACID; TIME FACTORS; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; UNIDENTIFIED BACTERIOPHAGE;

EID: 0041923779     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.1133325100     Document Type: Article

References (51)

1. Falco S. C., VanderLaan, K. & Rothman-Denes, L. B. (1977) Proc. Natl. Acad. Sci. USA 74, 520-523.
2. Falco, S. C., Zivin, R. & Rothman-Denes, L. B. (1978) Proc. Natl. Acad. Sci. USA 75, 3220-3224.
3. Haynes, L. L. & Rothman-Denes, L. B. (1985) Cell 41, 597-605.
4. Glucksmann, M. A., Markiewicz, P., Malone, C. & Rothman-Denes, L. B. (1992) Cell 70, 491-500.
5. Markiewicz, P., Malone, C., Chase, J. W. & Rothman-Denes, L. B. (1992) Genes Dev. 6, 2010-2019.
6. Glucksmann-Kuis, M. A., Dai, X., Markiewicz, P. & Rothman-Denes, L. B. (1996) Cell 84, 147-154.
7. Sancar, A., Williams, K. R., Chase, J. W. & Rupp, W. D. (1981) Proc. Natl. Acad. Sci. USA 78, 4272-4278.
8. Williams, K. R., Spicer, E. K., LoPresti, M., Guggenheimer, R. A. & Chase, J. W. (1983) J. Biol. Chem. 258, 3346-3355.
9. Curth, U., Urbanke, C., Greipel, J., Gerberding, H., Tiranti, V. & Zeviani, M. (1994) Eur. J. Biochem. 221, 435-443.
10. Webster, G., Genschel, J., Curth, U., Urbanke, C., Kang, C. & Hilgenfeld, R. (1997) FEBS Lett. 411, 313-316.
11. Yang, C., Curth, U., Urbanke, C. & Kang, C. (1997) Nat. Struct. Biol. 4, 153-157.
12. Curth, U., Genschel, J., Urbanke, C. & Greipel, J. (1996) Nucleic Acids Res. 24, 2706-2711.
13. Lehnherr, H., Bendtsen, J. D., Preuss, F. & Ilvyna, T. V. (1999) J. Bacteriol. 181, 6463-6468.
14. Kolodkin, A. L., Capage, M. A., Golub, E. I. & Low, K. B. (1983) Proc. Natl. Acad. Sci. USA 80, 4422-4426.
15. Kazmierczak, K. M., Davydova, E. K., Mustaev, A. A. & Rothman-Denes, L. B. (2002) EMBO J. 21, 5815-5823.
16. Lohman, T. M., Green, J. M. & Beyer, R. S. (1986) Biochemistry 25, 21-25.
17. Porter, R. D., Black, S., Pannuri, S. & Carlson, A. (1990) Bio/Technology 8, 47-51.
18. Porter, R. D. & Black, S. (1991) J. Bacteriol. 173, 2720-2723.
19. Willis, M. C., Hicke, B. J., Uhlenbeck, O. C., Cech, T. R. & Koch, T. H. (1993) Science 262, 1255-1257.
20. Williams, K. R., Murphy, J. B. & Chase, J. W. (1984) J. Biol. Chem. 259, 11804-11811.
21. Lohman, T. M. & Overman, L. B. (1985) J. Biol. Chem. 260, 3594-3603.
22. Bujalowski, W. & Lohman, T. M. (1986) Biochemistry 25, 7799-7802.
23. Bujalowski, W. & Lohman, T. M. (1989) J. Mol. Biol. 207, 249-268.
24. Lohman, T. M. & Bujalowski, W. (1994) Biochemistry 33, 6167-6176.
25. Overman, L. B., Bujalowski, W. & Lohman, T. M. (1988) Biochemistry 27, 456-471.
26. Kowalczykowski, S. C., Lonberg, N., Newport, J. W. & von Hippel, P. H. (1981) J. Mol. Biol. 145, 75-104.
27. Alberts, B. M., Frey, L. & Delius, H. (1972) J. Mol. Biol. 68, 139-152.
28. Kim, Y. T., Tabor, S., Bortner, C., Griffith, J. D. & Richardson, C. C. (1992) J. Biol. Chem. 267, 15022-15031.
29. Lindberg, G. J., Kowalczykowski, S. C., Rist, J. K., Sugino, A. & Rothman-Denes, L. B. (1989) J. Biol. Chem. 264, 12700-12708.
30. Tiranti, V., Rocchi, M., DiDonato, S. & Zeviani, M. (1993) Gene 126, 219-225.
31. Raghunathan, S., Ricard, C. S., Lohman, T. M. & Waksman, G. (1997) Proc. Natl. Acad. Sci. USA 94, 6652-6657.
32. Raghunathan, S., Kozlov, A. G., Lohman, T. M. & Waksman, G. (2000) Nat. Struct. Biol. 7, 648-652.
33. Chase, J. W., Merril, B. M. & Williams, K. R. (1983) Proc. Natl. Acad. Sci. USA 80, 5480-5484.
34. Bujalowski, W. & Lohman, T. M. (1991) J. Mol. Biol. 217, 63-74.
35. Lohman, T. M. & Ferrari, M. E. (1994) Annu. Rev. Biochem. 63, 527-570.
36. Sarov-Blat, L. S. & Livneh, Z. (1998) J. Biol. Chem. 273, 5520-5527.
37. Glover, B. P. & McHenry, C. S. (1998) J. Biol. Chem. 273, 23476-23484.
38. Genschel, J., Curth, U. & Urbanke, C. (2000) Biol. Chem. 381, 183-192.
39. Kelman, Z., Yuzhakov, A., Andjelkovic, J. & O'Donnell, M. (1998) EMBO J. 17, 2436-2449.
40. Glassberg, J., Meyer, R. & Kornberg, A. (1979) J. Bacteriol. 140, 14-19.
41. Chase, J. W. L'Italien, J. J., Murphy, J. B., Spicer, E. K. & Williams, K. R. (1984) J. Biol. Chem. 259, 805-814.
42. Cermakian, N., Ikeda, T. M., Miramontes, P., Lang, B. F., Gray, M. W. & Cedergren, R. (1997) J. Mol. Evol. 45, 671-681.
43. Milligan, J. F., Groebe, D. R., Witherell, G. W. & Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
44. Jeruzalmi, D. & Steitz, T. A. (1998) EMBO J. 17, 4101-4113.
45. Sastry, S. & Ross, B. M. (1998) Proc. Natl. Acad. Sci. USA 95, 9111-9116.
46. Muller, D. K., Martin, C. T. & Coleman, J. E. (1988) Biochemistry 27, 5763-5771.
47. Ma, K., Temiakov, D., Jiang, M., Anikin, M. & McAllister, W. T. (2002) J. Biol. Chem. 277, 43206-43215.
48. He, B., Rong, M., Durbin, R. K. & McAllister, W. T. (1997) J. Mol. Biol. 265, 275-288.
49. Dai, X. & Rothman-Denes, L. B. (1998) Genes Dev. 12, 2782-2790.
50. Tahirov, T. H., Temiakov, D., Anikin, M., Patlan, V., McAllister, W. T. & Vassylyev, D. G. (2002) Nature 420, 43-50.
51. Yin, Y. W. & Steitz, T. A. (2002) Science 298, 1387-1395.