Proteomics of membrane proteins

Advances in Protein Chemistry

Volumn 65, Issue , 2003, Pages 271-307

  Whitelegge, Julian P ^a   Gómez, Stephen M ^a   Faull, Kym F ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE PROTEIN;

ELUTION; FAST ATOM BOMBARDMENT MASS SPECTROMETRY; GENE SEQUENCE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROTEIN PURIFICATION; PROTEOMICS; REVIEW; SEQUENCE TAGGED SITE; THYLAKOID MEMBRANE; UNINDEXED SEQUENCE;

EID: 0041919785     PISSN: 00653233     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0065-3233(03)01023-4     Document Type: Article

References (102)

1. Anandan, S., Vainstein, A., and Thornber, J. P. (1989). FEBS Lett. 256, 150-154.
2. Appleton, W. S. (2000). "Prozac and the New Antidepressants." Dutton/Plume, New York.
3. Arkin, I. T., Brünger, A. T., and Engelman, D. M. (1997). Proteins Struct. Funct. Genet. 28, 465-466.
4. Barber, M., Bordoli, R. S., Sedgwick, R. D., and Tyler, A. N. (1981). Nature 293, 270-275.
5. Barber, M., Bordoli, R. S., Elliot, G. J., Sedwick, R. D., and Tyler, A. N. (1982). Anal. Chem. 54, 654A-657A.
6. Barnidge, D. R., Dratz, E. A., Jesaitis, A. J., and Sunner, J. (1999). Anal. Biochem. 269, 1-9.
7. Blanco, D. R., Whitelegge, J. P., Miller, J. N., and Lovett, M. A. (1999). J. Bacteriol. 181, 5094-5098.
8. Bock, R., Hagemann, R., Kössel, H., and Kudla, J. (1993). Mol. Gen. Genet. 240, 238-244.
9. Boyot, P., Trifilieff, E., Van Dorsselaer, A., and Luu, B. (1988). Anal. Biochem. 173, 75-85.
10. Brett, M., and Findlay, J. B. C. (1983). Biochem. J. 211, 661-670.
11. Cadene, M., and Chait, B. T. (2000). Anal. Chem. 72, 5655-5658.
12. Curstedt, T., Johansson, J., Persson, P., Eklund, A., Robertson, B., Löwenadler, B., and Jörnvall, H. (1990). Proc. Natl. Acad. Sci. USA 87, 2985-2989.
13. Demmers, J. A. A., Haverkamp, J., Heck, A. J. R., Koeppe, R. E., II, and Killian, J. A. (2000). Proc. Natl. Acad. Sci. USA 97, 3189-3194.
14. Demmers, J. A. A., Killian, J. A., and Heck, A. J. R. (2001a). In "Proceedings of the 49th Conference on Mass Spectrometry and Allied Topics," Chicago, IL.
15. Demmers, J. A. A., van Duijn, E., Haverkamp, J., Greathouse, D. V., Koeppe, R. E., II, Heck, A. J. R., and Killian, J. A. (2001b). J. Biol. Chem. 276, 34501-34508.
16. Eisenberg, D. (1984). Annu. Rev. Biochem. 53, 595-623.
17. Farchaus, J., and Dilley, R. A. (1986). Arch. Biochem. Biophys. 244, 94-101.
18. Fearnley, I. M., and Walker, J. E. (1996). Biochem. Soc. Trans. 24, 912-917.
19. Feick, R. G., and Shiozawa, J. A. (1990). Anal. Biochem. 187, 205-211.
20. Findlay, J. B. C. (1987). In "Biological Membranes: A Practical Approach" (J. B. C. Findlay and W. H. Evans, Eds.), pp. 179-217. IRL Press, Oxford.
21. Findlay, J. B. C., Brett, M., and Pappin, D. J. C. (1981). Nature 293, 314-316.
22. Fridriksson, E. K., Baird, B., and McLafferty, F. W. (1999). J. Am. Soc. Mass Spectrom. 10, 453-455.
23. Fuller, R. W., and Wong, D. T. (1990). Ann. N.Y. Acad. Sci. 600, 68-80.
24. Gadsby, D. C., and Nairn, A. C. (1999). Physiol. Rev. 79, S77-S107.
25. Gerber, G. E., Anderegg, R. J., Herlihy, W. C., Gray, C. P., Biemann, K., and Khorana, H. G. (1979). Proc. Natl. Acad. Sci. USA 76, 227-231.
26. Gómez, S. M., Park, J. J., Zhu, J., Whitelegge, J. P., and Thornber, J. P. (1999). Photosynthesis: Mechanisms and effects. In "Proceedings of the 11th International Congress on Photosynthesis" (G. Garab, Ed.), Vol. I, pp. 353-356. Kluwer Academic, Dordrecht, The Netherlands.
27. Gómez, S. M., Nishio, J. N., Faull, K. F., and Whitelegge, J. P. (2002). Mol. Cell. Proteomics 1, 46-59.
28. Gómez, S. M., Bil, K. Y., Aguilera, R., Nishio, J. N., Faull, K. F., and Whitelegge, J. P. (2003). In preparation.
29. Goodspeed, T. H., and Clausen, R. E. (1928). Univ. Calif. Publ. Botany 11, 245-256.
30. Gray, J. C., Kung, S. D., Wildman, S. G., and Sheen, S. J. (1974). Nature 252, 226-227.
31. Green, B. N., and Bordoli, R. S. (1986). In "Mass Spectrometry in Biomedical Research" (S. J. Gaskell, Ed.), pp. 235-250. John Wiley & Sons, New York.
32. Greer, K. L., and Golden, S. S. (1992). Plant Mol. Biol. 19, 355-365.
33. Haltia, T., and Freire, R. (1995). Biochim. Biophys. Acta 1241, 295-322.
34. Heukeshoven, J., and Dernick, R. (1982). J. Chromatogr 252, 241-254.
35. Hille, B. (1992). "Ionic Channels of Excitable Membranes," 2nd ed., pp. 1-20. Sinauer Associates, Sunderland, MA.
36. Hoot, S. B., Magallon, S., and Crane, P. R. (1999). Ann. Mo. Bot. Gard. 86, 1-32.
37. Hufnagel, P., Schweiger, U., Eckerskorn, C., and Oesterhelt, D. (1996). Anal. Biochem. 243, 46-54.
38. Ikeda, T. M., Terachi, T., and Tsunewaki, K. (1992). Jpn. J. Genet. 67, 111-123.
39. Ikeuchi, M., Takio, K., and Inoue, Y. (1989). FEBS Lett. 242, 263-269.
40. Jensen, P. K., Pasa-Toli, L., Anderson, G. A., Horner, J. A., Lipton, M. S., Bruce, J. E., and Smith, R. D. (1999). Anal. Chem. 71, 2076-2084.
41. Joppich-Kuhn, R., Corkill, J. A., and Giese, R. W. (1982). Anal. Biochem. 119, 73-77.
42. Kelleher, N. L., Lin, H. Y., Valaskovic, G. A., Aaserud, D. J., Fridriksson, E. K., and McLafferty, F. W. (1999). J. Am. Chem. Soc. 121, 806-812.
43. Kühlbrandt, W., Wang, D. N., and Fujiyoshi, Y. (1994). Nature 367, 614-621.
44. Kung, S. D., Gray, J. C., Wildman, S. G., and Carlson, P. S. (1975). Science 187, 353-355.
45. le Coutre, J., Whitelegge, J. P., Gross, A., Turk, E., Wright, E. M., Kaback, H. R., and Faull, K. F. (2000). Biochemistry 39, 4237-4242.
46. Lehmbeck, J., Stummann, B. M., and Henningsen, K. W. (1989). Physiol. Plant 76, 57-64.
47. le Maire, M., Deschamps, S., Møller, J. V., Le Caer, J. P., and Rossier, J. (1993). Anal. Biochem. 214, 50-57.
48. Lin, D., Alpert, A.J., and Yates, J. R., III. (2001). Am. Genomic/Proteomic Technol. 1, 38-46.
49. Loo, D. D. F., Zeuthen, T., Chandy, G., and Wright, E. M. (1996). Proc. Natl. Acad. Sci. USA 93, 13367-13370.
50. Macfarlane, R. D. (1990). Methods Enzymol. 193, 263-280.
51. Macfarlane, R. D., and Torgerson, D. F. (1976). Science 191, 920-925.
52. Michel, H., Hunt, D. F., Shabanowitz, J., and Bennett, J. (1988). J. Biol. Chem. 263, 1123-1130.
53. Mirza, U. A., and Chait, B. T. (1994). Anal. Chem. 66, 2898-2904.
54. Molloy, M. P. (2000). Anal. Biochem. 280, 1-10.
55. Obokata, J., Mikami, K., Hayashida, N., Nakamura, M., and Sugiura, M. (1993). Plant Physiol. 102, 1259-1267.
56. Obokata, J., Mikami, K., Yamamoto, Y., and Hayashida, N. (1994). Plant Cell Physiol. 35, 203-209.
57. Oesterhelt, D., Meentzen, M., and Schuhmann, L. (1973). Eur. J. Biochem. 40, 453-463.
58. Pappin, D. J. C., and Findlay, J. B. C. (1984). Biochem. J. 217, 605-613.
59. Picot, D., Loll, P. J., and Garavito, R. M. (1994). Nature 367, 243-249.
60. Popot, J.-L., and Engelman, D. M. (2000). Annu. Rev. Biochem. 69, 881-922.
61. Rosinke, B., Strupat, K., Hillenkamp, F., Rosenbusch, J., Dencher, N., Krüger, U., and Galla, H.-J. (1995). J. Mass Spectrom. 30, 1462-1468.
62. Russell, W. K., Park, Z. Y., and Russell, D. H. (2001). Anal. Chem. 73, 2682-2685.
63. Santoni, V., Molloy, M., and Rabilloud, T. (2000). Electrophoresis 21, 1054-1070.
64. Savolainen, V., Chase, M. W., Hoot, S. B., Morton, C. M., Soltis, D. E., Bayer, C., Fay, M. F., de Bruijn, A. Y., Sullivan, S., and Qiu, Y. L. (2000). Syst. Biol. 49, 306-362.
65. Schaller, J., Pellascio, B. C., and Schlunegger, U. P. (1997). Rapid Commun. Mass Spectrom. 11, 418-426.
66. Schey, K. L., Papac, D. I., Knapp, D. R., and Crouch, R. K. (1992). Bivphys. J. 63, 1240-1243.
67. Schindler, P. A., Van Dorsselaer, A., and Falick, A. M. (1993). Anal. Biochem. 213, 256-263.
68. Schmitz-Linneweber, C., Maier, R. M., Alcaraz, J. P., Cottet, A., Herrmann, R. G., and Mache, R. (2001). Plant Mol. Biol. 45, 307-315.
69. Schroda, M., Vallon, O., Whitelegge, J. P., Beck, C. F., and Wollman, F. A. (2001). Plant Cell 13, 2823-2839.
70. Sharma, J., Panico, M., Barber, J., and Morris, H. R. (1997a). J. Biol. Chem. 272, 3935-3943.
71. Sharma, J., Panico, M., Barber, J., and Morris, H. R. (1997b). J. Biol. Chem. 272, 33153-33157.
72. Sheppard, D. N., and Welsh, M. J. (1999). Physiol. Rev. 79, S23-S45.
73. Shevchenko, A., Loboda, A., Shevchenko, A., Ens, W., and Standing, K. G. (2000). Anal. Chem. 72, 2132-2141.
74. Smith, H. H. (1968). In "Nicotiana: Procedures for Experimental Use" (R. D. Durbin, Ed.), Technical Bulletin 1586, pp. 1-16. U.S. Department of Agriculture, Washington, D.C.
75. Stark, P., Fuller, R. W., and Wong, D. T. (1985). J. Clin. Psychiatry 46, 7-13.
76. Stowell, M. H. B., and Rees, D. C. (1995). Adv. Protein Chem. 46, 279-311.
77. Tarr, G. E., and Crabb, J. W. (1983). Anal. Biochem. 131, 99-107.
78. Tjon, K., Faull, K. F., and Whitelegge, J. P. (2000). UCLA Undergrad. Sci. J. 13, 122-126.
79. Turk, E., and Wright, E. M. (1997). J. Membr. Biol. 159, 1-20.
80. Turk, E., Kim, O., le Coutre, J., Whitelegge, J. P., Eskandari, S., Lam, J. T., Kreman, M., Zampighi, G., Faull, K. F., and Wright, E. M. (2000). J. Biol. Chem. 275, 25711-25716.
81. Vener, A. V., Harms, A., Sussman, M. R., and Vierstra, R. D. (2001). J. Biol. Chem. 276, 6959-6966.
82. Victora, C. G., Bryce, J., Fontaine, O., and Monasch, R. (2000). Bull. World Health Organ. 78, 1246-1255.
83. Villa, S., De Fazio, G., and Canosi, U. (1989). Anal. Biochem. 177, 161-164.
84. von Heijne, G. (1999). Q. Rev. Biophys. 32, 285-305.
85. Webber, A. N., Hird, S. M., Packman, L. C., Dyer, T. A., and Gray, J. C. (1989). Plant. Mol. Biol. 12, 141-151.
86. Welsh, M., Tsui, L.-C., Boat, T. F., and Beudet, A. L. (1995). In "The Metabolic and Molecular Bases of Inherited Disease" (C. R. Scriver, A. L. Beaudet, W. S. Sly, and D. Balle, Eds.), 7th ed., pp. 3799-3876. McGraw-Hill, New York.
87. Wessel, D., and Flügge, U. I. (1984). Anal. Biochem. 138, 141-143.
88. Westhoff, P., Farchaus, J. W., and Herrmann, R. G. (1986). Curr. Genet. 11, 165-169.
89. White, S. H., and Wimley, W. C. (1999). Annu. Rev. Biophys. Biomol. Struct. 28, 319-365.
90. Whitelegge, J. P. (1998). In "The Handbook of Plant and Crop Stress" (M. Pessarakli, Ed.), pp. 555-568. Marcel Dekker, New York.
91. Whitelegge, J. P., Jewess, P., Pickering, M. G., Gerrish, C., Camilleri, P., and Bowyer, J. R. (1992). Eur. J. Biochem. 207, 1077-1084.
92. Whitelegge, J. P., Gundersen, C. B., and Faull, K. F. (1998a). Protein Sci. 7, 1423-1430.
93. Whitelegge, J. P., Faull, K. F., and Fluharty, A. L. (1998b). In "Proceedings of the 46th Conference on Mass Spectrometry and Allied Topics," Orlando, Florida, May 31-June 4, 1998.
94. Whitelegge, J. P., Faull, K. F., Gundersen, C., and Gómez, S. M. (1999a). In "Photosynthesis: Mechanisms and Effects" (G. Garab, Ed.), Vol. V, pp. 4381-4384. Kluwer Academic Publishers, Dordrecht, The Netherlands.
95. Whitelegge, J. P., le Coutre, J., Lee, J. C., Engel, C. K., Privé, G. G., Faull, K. F., and Kaback, H. R. (1999b). Proc. Natl. Acad. Sci. USA 96, 10695-10698.
96. Whitelegge, J. P., Penn, B., To, T., Johnson, J., Waring, A., Sherman, M., Stevens, R. L., Fluharty, C. B., Faull, K. F., and Fluharty, A. L. (2000a). Protein Sci. 9, 1618-1630.
97. Whitelegge, J. P., Cerda, B., Horn, D., Ge, Y., Brueker, K., Young, R., Holowka, D., Baird, B., and McLafferty, F. W. (2000b). In "Proceedings of the 48th Conference on Mass Spectrometry and Allied Topics," June 11-15, 2000, Long Beach, CA.
98. Whitelegge, J. P., Zhang, H., Aguilera, R., Taylor, R. M., and Cramer, W. A. (2002). Mol. Cell. Proteomics 1, 816-827.
99. Wildner, G. F., Fiebig, C., Dedner, N., and Meyer, H. E. (1987). Z. Naturforsch. 42c, 739-741.
100. Wong, D. T., Bymaster, F. P., and Engleman, E. A. (1995). Life Sci. 57, 411-441.
101. Zhang, H., Whitelegge, J. P., and Cramer, W. A. (2001). J. Biol. Chem. 276, 38159-38165.
102. Zheleva, D., Sharma, J., Panico, M., Morris, H. R., and Barber, J. (1998). J. Biol. Chem. 273, 16122-16127.