Membrane topology motifs in the SGLT cotransporter family

Journal of Membrane Biology

Volumn 159, Issue 1, 1997, Pages 1-20

  Turk, E ^a   Wright, E M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Helical hairpin; Hydrophobicity; Membrane insertion; Memsat; Phylogenetic analysis; Predict; Protein

Indexed keywords

GLUCOSE TRANSPORTER;

AMINO ACID SEQUENCE; ESCHERICHIA COLI; EVOLUTION; GENETIC PROCEDURES; HUMAN; HYDROPHOBICITY; MEMBRANE STRUCTURE; NONHUMAN; PHYLOGENY; PROTEIN ANALYSIS; PROTEIN FAMILY; REVIEW; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BACTERIA; HUMANS; INSECTS; MAMMALS; MEMBRANE GLYCOPROTEINS; MOLECULAR SEQUENCE DATA; MONOSACCHARIDE TRANSPORT PROTEINS; NEMATODA; PHYLOGENY; PROTEIN CONFORMATION; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SODIUM-GLUCOSE TRANSPORTER 1;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; INSECTA; MAMMALIA;

EID: 0030924414     PISSN: 00222631     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002329900264     Document Type: Review

References (75)

1. Anonymous 1994. Program Manual for the Wisconsin Package, Version 8, Genetics Computer Group, Madison, Wisconsin
2. Andersson, H., von Heijne, G. 1993. Sec dependent and sec independent assembly of E. coli inner membrane proteins: the topological rules depend on chain length. EMBO J. 12:683-691
3. Andersson, H., von Heijne, G. 1994. Positively charged residues influence the degree of SecA dependence in protein translocation across the E. coli inner membrane. FEBS Lett. 347:169-172
4. Bassilana, M., Gwizdek, C. 1996. In vivo membrane assembly of the E. coli polytopic protein, melibiose permease, occurs via a Sec-independent process which requires the protonmotive force. EMBO J. 15:5202-5208
5. -]-coupled gamma-aminobutyric acid transporter from rat brain. J. Biol. Chem. 272:1203-1210
6. Boyd, D., Traxler, B., Jander, G., Prinz, W., Beckwith, J. 1993. Gene fusion approaches to membrane protein topology. Soc. Gen. Physiol. Ser. 48:23-37
7. Buhr, A., Erni, B. 1993. Membrane topology of the glucose transporter of Escherichia coli. J. Biol. Chem. 268:11599-11603
8. Calamia, J., Manoil, C. 1990. lac permease of Escherichia coli: topology and sequence elements promoting membrane insertion. Proc. Natl. Acad. Sci. USA 87:4937-4941
9. Cao, G., Cheng, S., Whitley, P., von Heijne, G., Kuhn, A., Dalbey, R.E. 1994. Synergistic insertion of two hydrophobic regions drives Sec-independent membrane protein assembly. J. Biol. Chem. 269:26898-26903
10. Conti-Fine, B.M., Lei, S.J., McLane, K.E. 1996. Antibodies as tools to study the structure of membrane proteins: The case of the nicotinic acetylcholine receptor. Annu. Rev. Biophys. Biomol. Struct. 25:197-229
11. Creighton, T.E. 1993. Proteins: Structures and Molecular Properties. W.H. Freeman, New York
12. Dalbey, R.E., Kuhn, A., von Heijne, G. 1995. Directioality in protein translocation across membranes: the N-tail phenomenon. Trends Cell Biol. 5:380-383
13. Doolittle, R.F. 1986. Of Urfs and Orfs: A Primer on How to Analyze Derived Amino Acid Sequences. University Science Books, Mill Valley, CA
14. Eisenberg, D., Schwarz, E., Komaromy, M., Wall, R. 1984. Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol. 179:125-142
15. Engelman, D.M., Steitz, T.A. 1981. The spontaneous insertion of proteins into and across membranes: the helical hairpin hypothesis. Cell 23:411-422
16. Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package) Version 3.5c, Distributed by the author. Dept. Genetics, U. Washington, Seattle
17. Feng, D.F., Doolittle, R.F. 1996. Progressive alignment of amino acid sequences and construction of phylogenetic trees from them. Methods Enzymol. 266:368-382
18. Gafvelin, G., Sakaguchi, M., Andersson, H., von Heijne, G. 1997. Topological rules for membrane protein assembly in eukaryotic cells. J. Biol. Chem. 272:6119-6127
19. Gafvelin, G., von Heijne, G. 1994. Topological "frustration" in multispanning. E. coli inner membrane proteins. Cell 77:401-412
20. +/proline symport carrier of Escherichia coli. Biochim. Biophys. Acta 1105:61-66
21. Hartmann, E., Rapoport, T.A., Lodish, H.F. 1989. Predicting the orientation of eukaryotic membrane-spanning proteins. Proc. Natl. Acad. Sci. USA 86:5786-5790
22. +/glucose cotransporter. Nature 330:379-381
23. +/glucose cotransporter. J. Biol. Chem. 272:2110-2115
24. +-glucose cotransporters (SGLT-1). Am. J. Physiol. 270:G919-G926
25. Huber, F., Erni, B. 1996. Membrane topology of the mannose transporter of Escherichia coli K12. Eur. J. Biochem. 239:810-817
26. Jacobs, R.E., White, S.H. 1989. The nature of the hydrophobic binding of small peptides at the bilayer interface: implications for the insertion of transbilayer helices. Biochemistry 28:3421-3437
27. Jones, D.T., Taylor, W.R., Thornton, J.M. 1994. A model recognition approach to the prediction of all-helical membarne protein structure and topology. Biochemistry 33:3038-3049
28. Kaback, H.R., Frillingos, S., Jung, H., Jung, K., Prive, G.G., Ujwal, M.L., Weitzman, C., Wu, J., Zen, K. 1994. The lactose permease meets Frankenstein. J. Exp. Biol. 196:183-195
29. +/glucose cotransporter SGLT2. Delineation of the major renal reabsorptive mechanism for D-glucose. J. Clin. Invest. 93:397-404
30. +/proline symport carrier in Escherichia coli. FEBS Lett. 256:135-138
31. +/glucose cotransporters. J. Biol. Chem. 268:1509-1512
32. Kuhn, A. 1988. Alterations in the extracellular domain of M13 procoat protein make its membrane insertion dependent on secA and secY. Eur. J. Biochem. 177:267-271
33. Kyte, J., Doolittle, R.F. 1982. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:105-132
34. Lee, J.I., Kuhn, A., Dalbey, R.E. 1992. Distinct domains of an oligotopic membrane protein are Sec-dependent and Sec-independent for membrane insertion. J. Biol. Chem. 267:938-943
35. +/glucose cotransporter. Proc. Natl. Acad. Sci. USA 93:13367-13370
36. Loo, T.W., Clarke, D.M. 1995. Membrane topology of a cysteine-less mutant of human P-glycoprotein. J. Biol. Chem. 270:843-848
37. +/glucose cotransporter and not an amino acid transporter. A reinterpretation. J. Biol. Chem. 269:22488-22491
38. Marger, M.D., Saier, M.H. 1993. A major superfamily of transmembrane facilitators that catalyse uniport, symport and antiport [see comments]. Trends Biochem. Sci. 18:13-20
39. Nakashima, H., Nishikawa, K. 1992. The amino acid composition is different between the cytoplasmic and extracellular sides in membrane proteins. FEBS Lett. 303:141-146
40. Nilsson, I.M., von Heijne, G. 1993. Determination of the distance between the oligosaccharyltransferase active site and the endoplasmic reticulum membrane. J. Biol. Chem. 268:5798-5801
41. Olender, E.H., Simoni, R.D. 1992. The intracellular targeting and membrane topology of 3-hydroxy-3-methylglutaryl-CoA reductase. J. Biol. Chem. 267:4223-4235
42. Olivares, L., Aragon, C., Gimenez, C., Zafra, F. 1997. Analysis of the transmembrane topology of the glycine transporter GLYT1. J. Biol. Chem. 272:1211-1217
43. +/nucleoside cotransporter. J. Biol. Chem. 267:3557-3560
44. +/glucose cotransporter. J. Biol. Chem. 270:27099-27105
45. +/glucose cotransporter: I. Voltage-clamp studies. J. Membrane Biol. 125:49-62
46. +/glucose cotransporter: II. A transport model under nonrapid equilibrium conditions. J. Membrane Biol. 125:63-79
47. 2-terminal positively charged residues in establishing membrane protein topology. J. Biol. Chem. 268:19101-19109
48. Pearson, W.R., Miller, W. 1992. Dynamic programming algorithms for biological sequence comparison. Methods Enzymol. 210:575-601
49. Persson, B., Argos, P. 1996. Topology prediction of membrane proteins. Protein Science 5:363-371
50. Pourcher, T., Bibi, E., Kaback, H.R., Leblanc, G. 1996. Membrane topology of the melibiose permease of Escherichia coli studied by melB-phoA fusion analysis. Biochemistry 35:4161-4168
51. +/proline permease of Escherichia coli is critical for high-affinity proline uptake. Eur. J. Biochem. 239:732-736
52. +/glucose symporters of mammals. Res. Microbiol. 141:1069-1072
53. Rost, B., Sander, C. 1994. Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19:55-72
54. Saaf, A., Andersson, H., Gafvelin, G., von Heijne, G. 1995. SecA-dependence of the translocation of a large periplasmic loop in the Escherichia coli MalF inner membrane protein is a function of sequence context. Mol. Membr. Biol. 12:209-215
55. Saier, M.H. 1994. Computer-aided analyses of transport protein sequences: gleaning evidence concerning function, structure, biogenesis, and evolution. Microbiol. Rev. 58:71-93
56. +/glucose symporter (Sg1S) of Vibrio parahaemolyticus. J. Bacteriol. 179:1805-1808
57. +/galactose (glucose) symport system in Vibrio parahaemolyticus. Biochim. Biophys. Acta 1279:149-156
58. Spruijt, R.B., Wolfs, C.J., Verver, J.W., Hemminga, M.A. 1996. Accessibility and environment probing using cysteine residues introduced along the putative transmembrane domain of the major coat protein of bacteriophage M13. Biochemistry 35:10383-10391
59. Sugiyama, J.E., Mahmoodian, S., Jacobson, G.R. 1991. Membrane topology analysis of Escherichia coli mannitol permease by using a nested-deletion method to create mtlA-phoA fusions. Proc. Natl. Acad. Sci. USA 88:9603-9607
60. +-dependent active type and erythrocyte/ HepG2-glucose transporters in rat kidney: immunofluorescence and immunogold study. J. Histochem. Cytochem. 39:287-298
61. Takeda, K., Shigemura, A., Hamada, S., Gu, W., Fang, D., Sasa, K., Hachiya, K. 1992. Dependence of reaction rate of 5,5′-dithiobis-(2-nitrobenzoic acid) to free sulfhydryl groups of bovine serum albumin and ovalbumin on the protein conformations. J. Protein Chem. 11:187-192
62. + transport protein (RhaT) from enterobacteria. J. Biol. Chem. 268:26850-26857
63. Traxler, B., Boyd, D., Beckwith, J. 1993. The topological analysis of intergral cytoplasmic membrane proteins. J. Membrane Biol. 132:1-11.
64. +/glucose cotransporter SGLT1. J. Biol. Chem. 271:1925-1934
65. +-dependent glucose cotransporter (SGLT1): maintenance of surface expression and global transport function with selective perturbation of transport kinetics and polarized expression. J. Biol. Chem. 271:7738-7744
66. von Heijne, G. 1989. Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues. Nature 341:456-458
67. von Heijne, G. 1994. Membrane proteins: from sequence to structure. Annu. Rev. Biophys. Biomol. Struct. 23:167-192
68. von Heijne, G., Gavel, Y. 1988. Topogenic signals in integral membrane proteins. Eur. J. Biochem. 174:671-678
69. Wallin, E., von Heijne, G. 1995. Properties of N-terminal tails in G-protein coupled receptors: a statistical study. Protein Eng. 8:693-698
70. White, S.H. 1994. Membrane Protein Structure (White, S.H., ed) pp. 97-124, Oxford University Press, New York
71. White, S.H., Jacobs, R.E. 1990. Observations concerning topology and locations of helix ends of membrane proteins of known structure. J. Membrane Biol. 115:145-158
72. Wilkinson, B.M., Critchley, A.J., Stirling, C.J. 1996. Determination of the transmembrane topology of yeast Sec61p, an essential component of the endoplasmic reticulum translocation complex. J. Biol. Chem. 271:25590-25597
73. Wright, E.M., Loo, D.D.F., Turk, E., Hirayama, B.A. 1996. Sodium cotransporters. Curr. Opin. Cell Biol. 8:468-473
74. Yamato, I., Kotani, M., Oka, Y., Anraku, Y. 1994. Site-specific alteration of arginine 376, the unique positively charged amino acid residue in the mid-membrane-spanning regions of the proline carrier of Escherichia coli. J. Biol. Chem. 269:5720-5724
75. +- and Cl -dependent betaine transporter that is regulated by hypertonicity. J. Biol. Chem. 267:649-652