Rapid biological diagnosis in an epidemic context: Present situation, prospectives;Diagnostic biologique rapide en contexte épidémique: État des lieux, perspectives

Medecine et Maladies Infectieuses

Volumn 33, Issue 8, 2003, Pages 396-412

  Chakour, M ^a   Koeck, J L ^b   Maslin, J ^b   Nicand, E ^b   Chadli, M ^a   Nizou, J Y ^b   Buisson, Y ^b  

^a MILITARY HOSPITAL MOHAMMED V   (Morocco)

^b University of Paris Descartes   (France)

Author keywords

Dipstick; Outbreak; Rapid diagnosis; Real time PCR

Indexed keywords

ALGORITHM; ANTIBODY DETECTION; ANTIGEN DETECTION; BLEEDING; BRAIN INFECTION; CARD TEST; CLINICAL EXAMINATION; DIAGNOSTIC TEST; DIARRHEA; DIPSTICK; EPIDEMIC; EVALUATION; FEVER; HUMAN; JAUNDICE; MICROBIAL IDENTIFICATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RASH; RELIABILITY; RESPIRATORY TRACT INFECTION; REVIEW; SEQUENCE ANALYSIS; SORE THROAT; SYMPTOM; TECHNIQUE; VIRUS ISOLATION;

EID: 0041823156     PISSN: 0399077X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0399-077X(03)00206-3     Document Type: Article

References (74)

1. Information aux utilisateurs. Mise à jour. Afssaps -Tests de diagnostic rapide des angines à streptocoques A, 18 décembre 2002.
2. er août 2002). Virologie 2002;6:468-76.
3. Al-Sheikhly D, Devine P, Aaskov J, Barnard R. A one tube multiplex RT PCR for the detection of Dengue, Yellow fever and Japanese Encephalitis virus. 48th annual Meeting of the American Society for Tropical Medicine and Hygiene, Washington D.C. 1999.
4. Bell D, Go R, Miguel C, et al. Diagnostic du paludisme dans une région reculée des Philippines: comparaison de plusieurs techniques et de leur acceptation par les agents de santé et la communauté. Bull WHO 2001;79:933-41.
5. Berdal BP, Mehl R, Haaheim H, Loksa M, Grunow R, Burans J, et al. Field detection of Francisella tularensis. Scand J Infect Dis 2000;32: 287-91.
6. Brandao A, Camargo E, Da Silva E, Silva M, Abrao R. Macroscopic agglutination test for rapid diagnosis of human leptospirosis. J Clin Microbiol 1998;36:3138-42.
7. Bricaire F, Bossi P. La variole, agent du bioterrorisme. Presse Med 2002;31:1813-7.
8. Brulavoine T, Roussel P, Joly E, Attrée O, van Cuyck Gandré H, Michel P. Development of rapid assay for diagnosis of human arbovirus diseases. Am J Trop Med Hyg 1997;57:295.
9. Bhutta ZA, Mansurali N. Rapid serologic diagnosis of pediatric typhoid fever in an endemic area: a prospective comparative evaluation of 2 dot-enzyme immuno-assays and the Widal test. Am J Trop Med Hyg 1999;61:654-7.
10. Cao LK, Anderson G, Ligler F, Ezzell J. Detection of Yersinia pestis fraction F1 antigen with a fiber optic biosensor. J Clin Microbiol 1995;33:336-41.
11. Carattoli A, Dionisi A, Luzzi I. Use of a LightCycler gyrA mutation assay for identification of ciprofloxacin-resistant Campylobacter coli. Fems Microbiol Lett 2002;214:87-93.
12. Chanteau S, Rahalison L, Ralafiarisoa L, et al. Development and testing of a rapid diagnostic test for bubonic and pneumonic plague. The Lancet 2003;361:211-6.
13. Chinprasatsak S, Wilairatana P, Looareesuwan S, Chappuis F, Akkhavong K, Laferl H, et al. Evaluation of a newly developed dipstick test for the rapid diagnosis of scrub typhus in febrile patients. Southeast Asian J Trop Med Public Health 2001;32:132-6.
14. Choo KE, Davis TM, Ismail A, Tuan Ibrahim TA, Ghazali WN. Rapid and reliable serological diagnosis of enteric fever: comparative sensitivity and specificity of Typhidot and Typhidot-M tests in febrile Malaysian children. Acta Trop 1999;72:175-83.
15. Coleman R, Sangkasuwan V, Suwanabun N, Eamsila C, Mungviriya S, Devine P, et al. Comparative evaluation of selected diagnosis assays for the detection of IgG and IgM antibody to Orientia tsutsugamushi in Thailand. Am J Trop Med Hyg 2002;67:497-503.
16. Colin L, Mallié M, Bastide JM. Diagnostic rapide du paludisme par la recherche d'antigènes circulants. RFL 2000;319:59-64.
17. Colwell RR, Hasan JA, Huq A, Loomis L, Siebeling RJ, Torres M, et al. Development and evaluation of a rapid, simple, sensitive, monoclonal antibody-based co-agglutination test for direct detection of Vibrio cholerae 01. Fems Microbiol Lett 1992;76:215-9.
18. Corless CE, et al. Simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and Streptococcus pneumoniae in suspected cases of meningitis and septicemia using real-time PCR. J Clin Microbiol 2001;39:1553-8.
19. Costa-Mattioli M, Monpoeho S, Nicand E, Aleman MH, Billaudel S, Ferre V. Quantification and duration of viraemia during hepatitis A infection as determined by real-time RT-PCR. J Viral Hepat 2002;9: 101-6.
20. Cuzzubo AJ, Vaughn DW, Nisalak A, Solomon T, Kalayanarooj S, Aaskov J, et al. Comparaison of PanBio Dengue Duo IgM and IgG Capture Elisa and Venture Technologies Dengue IgM and IgG Dot Blot. J Clin Virol 2000;16:135-44.
21. De Philippis A, Nogueira R, Schatzmayr H, Tavares D, Jabor A, Diniz S, et al. Outbreak of jaundice and hemorragic fever in the Southeast of Brazil in 2001: Detection and molecular characterization of yellow fever virus. J Med Virol 2002;68:620-7.
22. Drosten C, Göttig S, Schilling S, Asper M, Panning M, Schmitz H, et al. Rapid detection and quantification of RNA of Ebola and Marburg viruses, Lassa virus, Crimean-Congo hemorragic fever virus, Rift Valley fever virus, dengue virus, and yellow fever virus by real-time reverse transcription-PCR. J Clin Microbiol 2002;40:232-330.
23. Eapen CK, Sugathan S, Kuriakose M, Abdoel T, Smits HL. Evaluation of the clinical utility of a rapid blood test for human leptospirosis. Diagn Microbiol Infect Dis 2002;42:221-5.
24. Effler PV, Bogard A, Domen H, Katz A, Higa H, Sasaki DM. Evaluation of 8 rapid screening tests for acute leptospirosis in Hawaii. J Clin Microbiol 2002;40:1464-9.
25. Freeman R, Magee J, Barratt A, Wheeler J, Steward M, Lee M, et al. Rapid immunochromatographic assay for diagnosis of tuberculosis: antibodies detected may not be specific. J Clin Microbiol 1999;37: 2111-2.
26. Freymuth F. Épidémiologie et diagnostic des infections à virus respiratoire syncytial. Bronchopneumopathies virales, Guide MediBio, 2. Éditions Elsevier; 2001. p. 43-54.
27. Garcia LS, Shimizu RY, Novak S, Carroll M, Chan F. Commercial assay for detection of Giardia lamblia and Cryptosporidium parvum antigens in human fecal specimens by rapid solid-phase qualitative immunochromatography. J Clin Microbiol 2003;41:209-12.
28. Garcia de Viedma D, del Sol Diaz Infantes M, Lasala F, Chaves F, Alcala L, Bouza E. New real-time PCR able to detect in a single tube multiple rifampin resistance mutations and high-level isoniazid resistance mutations in Mycobacterium tuberculosis. J Clin Microbiol 2002;40:988-95.
29. Garin D, Cuillerier B, Dauendorffer JN, Crance JM, Lina B, Lozniewski A, et al. Diagnostic moléculaire en pathologie infectieuse: intérêt d'un diagnostic multiplex dans les pneumopathies atypiques. Revue Française des Laboratoires 1999;315:31-5.
30. Gasem MH, Smits H, Goris M, Dolmans WM. Evaluation of a simple and rapid dipstick assay for the diagnosis of typhoid fever in Indonesia. J Med Microbiol 2002;51:173-7.
31. Gounder C, De Queiroz Mello FC, Conde MB, Bishai WR, Kritski AL, Chaisson RE, et al. Field evaluation of a rapid immunochromatographic test for tuberculosis. J Clin Microbiol 2002;40: 1989-93.
32. Gray SJ, et al. Ultrasound-enhanced latex immuno-agglutination and PCR as complementary methods for non-culture-based confirmation of meningococcal disease. J Clin Microbiol 1999;37:1797-801.
33. Hasan J, Huq A, Tamplin M, Siebeling R, Colwell R. A novel kit for rapid detection of Vibrio cholerae O1. J Clin Microbiol 1994;32:249-52.
34. Hatta M, Goris M, Heerkens E, Gooskens J, Smits HL. Simple dipstick assay for the detection of Salmonella Typhi-specific IgM antibodies and the evolution of the immune response in patients with typhoid fever. Am J Trop Med Hyg 2002;66:416-21.
35. Hechemy KE, Osterman J, Eisemann C, Elliott L, Sasowski SJ. Detection of typhus antibodies by latex agglutination. J Clin Microbiol 1981;13:214-6.
36. Heyman SN, et al. Meningococcal meningitis among Rwandan refugees: diagnosis, management, and outcome in a field hospital. Int J Infect Dis 1998;2:137-42.
37. Ismail TF, Smits H, Wasfy MO, Malone JL, Fadeel MA, Mahoney F. Evaluation of dipstick tests for diagnosis of brucellosis and typhoid fever in Egypt. J Clin Microbiol 2002;40:3509-11.
38. Katanik MT, Schneider SK, Rosenblatt JE, Hall GS, Procop GW. Evaluation of ColorPAC Giardia/Cryptosporidium rapid assay and ProSpecT Giardia/Cryptosporidium microplate assay for detection of Giardia and Cryptosporidium in fecal specimens. J Clin Microbiol 2001;39:4523-5.
39. Koo K, Jaykus LA. Detection of Listeria monocytogenes from a model food by fluorescence resonance energy transfer-based PCR with an asymetric fluorogenic probe set. Appl Environ Micobiol 2003;69:1028-1028.
40. Kurowski PB, Traub-Dargatz JL, Morley PS, Gentry-Weeks CR. Detection of Salmonella spp. in fecal specimens by use of real-time polymerase chain reaction assay. Am J Vet Res 2002;63:1265-8.
41. Levett PN, Branch SL, Whittington CU, Edwards CN, Paxton H. Two methods for rapid serological diagnosis of acute leptospirosis. Clin Diagn Lab Immunol 2001;8:349-51.
42. Lim PL, Tam F, Cheong YM, Jegathesan M. One-step 2-minute test to detect typhoid-specific antibodies based on particle separation in tubes. J Clin Microbiol 1998;36:2271-8.
43. Logan JM, Edwards KJ, Saunders NA, Stanley J. Rapid identification of Campylobacter spp. by melting peak analysis of biprobes in realtime PCR. J Clin Microbiol 2001;39:2227-32.
44. Miller N, Cleary T, Kraus G, Young AK, Spruill G, Hnatyszyn HJ. Rapid and specific detection of Mycobacterium tuberculosis from acid-fast bacillus smear-positive respiratory specimens and BacT/Alert MP culture bottles by using fluorogenic probes and realtime PCR. J Clin Microbiol 2002;40:4143-7.
45. Molling P, et al. Direct and rapid identification and genogrouping of meningococci and porA amplification by LightCycler PCR. J Clin Microbiol 2002;40:4531-5.
46. Morillon M. Composition d'un laboratoire minimum en zone tropicale. Med Trop 1995;55:127-8.
47. Nijhuis M, van Maarseveen N, Schuurman R, verkuijlen S, deVos M, Hendricksen K, et al. Rapid and sensitive routine detection of all members of the genus Enterovirus in different clinical specimens by real-time PCR. J Clin Microbiol 2002;40:3666-70.
48. Oggioni M, Maecci F, Carattoli A, Ciervo A, Orru G, Cassone A, et al. Protocol for real-time PCR identification of anthrax spores from nasal swabs after broth enrichment. J Clin Microbiol 2002;40:3956-63.
49. OMS - Programme élargi de vaccinations (PEV). Réunion sur les progrès de l'élimination de la rougeole: conclusions et recommandations. REH 1996;41:305-8.
50. [50] OMS - Guidelines for the collection of clinical specimens during field investigation of outbreaks. WHO/CDS/CSR/EDC/2000.4.
51. OMS - Équipe d'investigation du Réseau mondial d'alerte et de réponse aux épidémies. Épidémie de grippe à Madagascar en juillet et août 2002 BEH 2003;3:9-10.
52. Ouchi K, Hasegawa K, Nonaka Y, Matsushima H, Komura H, Maki T, et al. Rapid diagnosis of adenovirus respiratory tract infections by immunochromatography. J Infect Chemother 1999;5:220-2.
53. Paek SH, Lee SH, Cho JH, Kim YS. Development of rapid one-step immunochromatographic assay. Methods 2000;22:53-60.
54. Pandya M, Pillai P, Deb M. Rapid diagnosis of typhoid fever by detection of Barber protein and Vi antigen of Salmonella serotype typhi. J Med Microbiol 1995;43:185-8.
55. Papa A, Bozovic B, Pavlidou V, et al. Genetic detection and isolation of Crimean-Congo hemorragic fever virus, Kosovo, Yugoslavia. Emerg Infect Dis 2002;8:852-4.
56. Parida M, Upadhyay C, Saxena P, Dash P, Jana A, Seth P. Evaluation of a dipstick Elisa and a rapid immunochromatographic test for diagnosis of Dengue virus infection. Acta Virol 2001;45:299-304.
57. Perkins MD, Conde MB, Martins M, Kritski AL. Serologic diagnosis of tuberculosis using a simple commercial multi-antigen assay. Chest 2003;123:107-12.
58. Perkins MD, Mirrett S, Reller LB. Rapid bacterial antigen detection is not clinically useful. J Clin Microbiol 1995;33:1486-91.
59. Peterson L, Kelly P. The role of the clinical microbiology laboratory in the management of Clostridium difficile-associated diarrhea. Infect Dis Clin North Am. Diseases 1993;7:277-93.
60. Portier H, Peyramond D, Boucot I, Grappin M, Boibieux A, Pribil C. Évaluation de l'applicabilité du consensus sur la prise en charge de l'angine chez l'adulte. Méd Mal Infect 2001;31:388-95.
61. Qadri F, Hasan J, Hossain J, Chowdhury A, Begum Y, Azim T, et al. Evaluation of the monoclonal antibody-based kit Bengal Smart for rapid detection of Vibrio cholerae 0139 synonym Bengal in stool samples. J Clin Microbiol 1995;33(3):732-4.
62. Rao PS, Prasad SV, Arunkumar G, Shivananda PG. Salmonella Typhi VI antigen co-agglutination test for the rapid diagnosis of typhoid fever. Indian J Med Sci 1999;53:7-9.
63. Raoult D, Roux V, Ndihokubwayo JB, Bise G, Baudon D, Martet G, et al. Jail fever (epidemic typhus) outbreak in Burundi. Emerg Infect Dis 1997;3:357-60.
64. Regan TD, Norton SA. Diagnosis of smallpox. N Engl J Med 2002; 347:690-1.
65. Reischl U, Youssef MT, Kilwinski J, Lehn N, Zhang WL, Karch H, et al. Real-time fluorescence PCR assays for detection and characterization of Shiga toxin, intimin, and enterohemolysin genes from Shiga toxin-producing Escherichia coli. J Clin Microbiol 2002; 40:2555-65.
66. Sang CT, Hoon LS, Cuzzubo A, Devine P. Clinical evaluation of a rapid immunochromatographic test for the diagnosis of dengue virus infection. Clin Diagn Lab Immunol 1998;5:407-9.
67. Seghal S, Sugunan A, Vijayachari P. Outbreak of leptospirosis after the cyclone in Orissa. Natl Med J India 2002;15:22-3.
68. Smits HL, van Der Hoom MA, Goris MG, Gussenhoven GC, Yersin C, Sasaki DM, et al. Simple latex agglutination assay for rapid serodiagnosis of human leptospirosis. J Clin Microbiol 2000;38:1272-5.
69. Smits HL, Ananyina YV, Chereshsky A, Dancel L, Lai AF, Chee HD, et al. International multicenter evaluation of the clinical utility of a dipstick assay for detection of Leptospira-specific immunoglobulin M antibodies in human serum specimens. J Clin Microbiol 1999;37:2904-9.
70. Taty Taty R, Lebon P. Étude des réactifs Diarlex LA et Diaelex MB pour la détection directe des rotavirus et adénovirus dans les selles. Ann Biol Clin 2002;60:697-700.
71. Tsutsumi H, Ouchi K, Ohsaki M, Yamanaka T, Kuniya Y, Takeuchi Y, et al. Immunochromatography test for rapid diagnosis of adenovirus respiratory tract infections: comparison with virus isolation in tissue culture. J Clin Microbiol 1999;37:2007-9.
72. Warrilow D, Northill JA, Pyke A, Smith GA. Single rapid TaqMan fluorogenic probe based assay that detects all 4 dengue serotypes. J Med Virol 2002;66:524-8.
73. Wilson DL, Abner SR, Newman TC, Mansfield LS, Linz JE. Identification of ciprofloxacin-resistant Campylobacter jejuni by use of a fluorogenic PCR assay. J Clin Microbiol 2000;38:3971-8.
74. Woods WC, Karpati AM, Grein T, et al. An outbreak of Rift Valley fever in Northeastern Kenya, 1997-98. Emerg Infect Dis 2002;8:138-45.