Sequence elements controlling expression of Barley stripe mosaic virus subgenomic RNAs in vivo

Virology

Volumn 313, Issue 1, 2003, Pages 66-80

  Johnson, Jennifer A ^a   Bragg, Jennifer N ^a   Lawrence, Diane M ^a   Jackson, Andrew O ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; MESSENGER RNA; TRIPLE GENE BLOCK 1 PROTEIN; TRIPLE GENE BLOCK 2 PROTEIN; TRIPLE GENE BLOCK 3 PROTEIN; UNCLASSIFIED DRUG; VIRUS ENZYME; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; BARLEY STRIPE MOSAIC VIRUS; CONTROLLED STUDY; GENE DELETION; GENE EXPRESSION; GENE SEQUENCE; GENETIC TRANSCRIPTION; GENETIC TRANSFECTION; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT CELL; PRIORITY JOURNAL; PROTEIN SYNTHESIS; PROTOPLAST; RNA REPLICATION; RNA TRANSLATION; SITE DIRECTED MUTAGENESIS; TOBACCO;

BARLEY STRIPE MOSAIC VIRUS; HORDEUM VULGARE SUBSP. VULGARE;

EID: 0041387356     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0042-6822(03)00285-X     Document Type: Article

References (41)

1. Balmori E., Gilmer D., Richards K., Guilley H., Jonard G. Mapping the promoter for subgenomic RNA synthesis on the beet necrotic yellow vein virus RNA 3. Biochimie. 75:1993;517-521.
2. Boccard F., Baulcombe D. Mutational analysis of cis-acting sequences and gene function in RNA3 of cucumber mosaic virus. Virology. 193:1993;563-578.
3. Che X., Piestun D., Mawassi M., Yang G., Satyanarayana T., Gowda S., Dawson W.O., Bar-Joseph M. 5′-Coterminal subgenomic RNAs in citrus tristeza virus-infected cells. Virology. 283:2001;374-381.
4. Choi I.R., White K.A. An RNA activator of subgenomic mRNA1 transcription in tomato bushy stunt virus. J. Biol. Chem. 277:2002;3760-3766.
5. French R., Ahlquist P. Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA. J. Virol. 62:1988;2411-2420.
6. Grdzelishvili V.Z., Chapman S.N., Dawson W.O., Lewandowski D.J. Mapping of the tobacco mosaic virus movement protein and coat protein subgenomic RNA promoters in vivo. Virology. 275:2000;177-192.
7. Gustafson G., Hunter B., Hanau R., Armour S.L., Jackson A.O. Nucleotide sequence and genetic organization of barley stripe mosaic virus RNA γ Virology. 158:1987;394-406.
8. Hunter B.G., Smith J., Fattoh F., Jackson A.O. Relationship of lychnis ringspot virus to barley stripe mosaic virus and poa semilatent virus. Intervirology. 30:1989;18-26.
9. Johnston J.C., Rochon D.M. Deletion analysis of the promoter for the cucumber necrosis virus 0.9-kb subgenomic RNA. Virology. 214:1995;100-109.
10. Kelly L., Gerlach W.L., Waterhouse P.M. Characterization of the subgenomic RNAs of an Australian isolate of barley yellow dwarf luteovirus. Virology. 202:1994;565-573.
11. Koev G., Miller W.A. A positive-strand RNA virus with three very different subgenomic RNA promoters. J. Virol. 74:2000;5988-5996.
12. Koev G., Mohan B.R., Miller W.A. Primary and secondary structural elements required for synthesis of barley yellow dwarf virus subgenomic RNA1. J. Virol. 73:1999;2876-2885.
13. Koonin E.V., Dolja V.V. Evolution and taxonomy of positive-strand RNA viruses implications of comparative analysis of amino acid sequences . Crit. Rev. Biochem. Mol. Biol. 28:1993;375-430.
14. Kunkel T.A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. USA. 82:1985;488-492.
15. Lindenbach B.D., Sgro J.Y., Ahlquist P. Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication. J. Virol. 76:2002;3905-3919.
16. Miller W.A., Dreher T.W., Hall T.C. Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on minus-sense genomic RNA. Nature. 313:1985;68-70.
17. Miller W.A., Koev G. Synthesis of subgenomic RNAs by positive-strand RNA viruses. Virology. 273:2000;1-8.
18. Pasternak A.O., van den Born E., Spaan W.J., Snijder E.J. Sequence requirements for RNA strand transfer during nidovirus discontinuous subgenomic RNA Synthesis. EMBO J. 20:2001;7220-7228.
19. Petty I.T.D., French R., Jones R.W., Jackson A.O. Identification of barley stripe mosaic virus genes involved in viral RNA replication and movement. EMBO J. 96:1990;3453-3457.
20. Petty I.T.D., Hunter B.G., Jackson A.O. A novel strategy for one-step cloning of full-length cDNA and its application to the genome of barley stripe mosaic virus. Gene. 74:1988;423-432.
21. Petty I.T.D., Jackson A.O. Mutational analysis of barley stripe mosaic virus RNA β Virology. 179:1990;712-718.
22. Savenkov E.I., Solovyev A.G., Morozov S.Y. Genome sequences of poa semilatent and lychnis ringspot hordeiviruses. Arch. Virol. 143:1998;1379-1393.
23. Sawicki S.G., Sawicki D.L. A new model for coronavirus transcription. Adv. Exp. Med. Biol. 44:1998;215-219.
24. Shivprasad S., Pogue G.P., Kewandowski D.J., Hidalgo J., Donson J., Grill L.K., Dawson W.O. Heterologous sequences greatly affect foreign gene expression in tobacco mosaic virus-based vectors. Virology. 255:1999;312-323.
25. Siegel R.W., Adkins S., Kao C.C. Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase. Proc. Natl. Acad. Sci. USA. 94:1997;11238-11243.
26. Siegel R.W., Bellon L., Beigelman L., Kao C.C. Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. USA. 95:1998;11613-11618.
27. Sit T.L., Vaewhongs A.A., Lommel S.A. RNA-mediated trans-activation of transcription from a viral RNA. Science. 281:1998;829-832.
28. Solovyev A.G., Savenkov E.I., Grdzelishvili V.Z., Kalinina N.O., Morozov S.Y., Schiemann J., Atabekov J.G. Movement of hordeivirus hybrids with exchanges in the triple gene block. Virology. 253:1999;278-287.
29. Stawicki S.S., Kao C.C. Spatial perturbations within an RNA promoter specifically recognized by a viral RNA-dependent RNA Polymerase (RdRp) reveal that RdRp can adjust its promoter binding sites. J. Virol. 73:1999;198-204.
30. Van Der Kuyl A.C., Langereis K., Houwing C.J., Jaspars E.M.J., Bol J.F. Cis-acting elements involved in replication of alfalfa mosaic virus RNA in vitro. Virology. 176:1990;346-354.
31. Van Der Vossen E.A.G., Notenboom T., Bol J.F. Characterization of sequences controlling the synthesis of alfalfa mosaic virus subgenomic RNA in vitro. Virology. 212:1995;663-672.
32. van Regenmortel M.H.V., Fauquet C.M., Bishop D.H.L., Carstens E.B., Estes M.K., Lemon S.M., Maniloff J., Mayo M.A., McGeoch D.J., Pringle C.R., Wickner R.B. Virus Taxonomy The taxonomy and nomenclature of viruses . The Seventh Report of the International Committee on Taxonomy of Viruses. 2000;899-922 Academic Press, San Diego. and 969-989.
33. Verchot J., Angell S.M., Baulcombe D.C. In vivo translation of the triple gene block of potato virus X requires two subgenomic mRNAs. J. Virol. 72:1998;8316-8320.
34. Wang J., Carpenter C.D., Simon A.E. Minimal sequence and structural requirements of a subgenomic RNA promoter for turnip crinkle virus. Virology. 253:1999;327-336.
35. Wang J., Simon A.E. Analysis of the two subgenomic RNA promoters for turnip crinkle virus in vivo and in vitro. Virology. 232:1997;174-186.
36. Watanabe Y., Ohno T., Okada Y. Virus multiplication in tobacco protoplasts inoculated with tobacco mosaic virus RNA encapsulated in large unilamellar vesicular liposomes. Virology. 120:1982;478-480.
37. White K.A. The premature termination model a possible third mechanism for subgenomic mRNA transcription in (+)-strand RNA viruses . Virology. 304:2002;147-154.
38. Zhang G., Slowinski V., White K.A. Subgenomic mRNA regulation by a distal RNA element in a (+)-strand RNA virus. RNA. 5:1999;550-561.
39. Zhong W., Ruekert R.R. Flock house virus down-regulation of subgenomic RNA3 synthesis does not involve coat protein and is targeted to synthesis of its positive strand . J. Virol. 67:1993;2716-2722.
40. Zhou H., Jackson A.O. Analysis of cis-acting elements required for replication of barley stripe mosaic virus RNAs. Virology. 219:1996;150-160.
41. Zhou H., Jackson A.O. Expression of the barley stripe mosaic virus RNA β "triple gene block" Virology. 216:1996;367-379.