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Volumn 253, Issue 2, 1999, Pages 327-336

Minimal sequence and structural requirements of a subgenomic RNA promoter for turnip crinkle virus

Author keywords

Plant RNA viruses; RNA replication; RNA dependent RNA polymerase; Subgenomic RNAs; Turnip crinkle virus

Indexed keywords

RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

EID: 0033585382     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1998.9538     Document Type: Article
Times cited : (37)

References (40)
  • 1
    • 0030911444 scopus 로고    scopus 로고
    • Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase
    • Adkins, S., Siegel, R. W., Sun, J.-H., and Kao, C. C. (1997). Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase. RNA 3, 634-647.
    • (1997) RNA , vol.3 , pp. 634-647
    • Adkins, S.1    Siegel, R.W.2    Sun, J.-H.3    Kao, C.C.4
  • 2
    • 0031948720 scopus 로고    scopus 로고
    • Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase
    • Adkins, S., Stawicki, S. S., Faurote, G., Siegel, R. W., and Kao, C. C. (1998). Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase. RNA 4, 455-470.
    • (1998) RNA , vol.4 , pp. 455-470
    • Adkins, S.1    Stawicki, S.S.2    Faurote, G.3    Siegel, R.W.4    Kao, C.C.5
  • 3
    • 0027360448 scopus 로고
    • Mapping the promoter for subgenomic RNA synthesis on beet necrotic yellow vein virus RNA 3
    • Balmori, E., Gilmer, D., Richards, K., Guilley, H., and Jonard, G. (1993). Mapping the promoter for subgenomic RNA synthesis on beet necrotic yellow vein virus RNA 3. Biochimie (Paris) 75, 517-521.
    • (1993) Biochimie (Paris) , vol.75 , pp. 517-521
    • Balmori, E.1    Gilmer, D.2    Richards, K.3    Guilley, H.4    Jonard, G.5
  • 4
    • 0030820470 scopus 로고    scopus 로고
    • Analysis of the in vitro secondary structure of cucumber mosaic virus satellite RNA
    • Bernal, J. J., and Garcia-Arenal, F. (1997). Analysis of the in vitro secondary structure of cucumber mosaic virus satellite RNA. RNA 3, 1052-1067.
    • (1997) RNA , vol.3 , pp. 1052-1067
    • Bernal, J.J.1    Garcia-Arenal, F.2
  • 5
    • 0027194999 scopus 로고
    • Mutational analysis of cis-acting sequences and gene function in RNA3 of cucumber mosaic virus
    • Boccard, F., and Baulcombe, D. (1993). Mutational analysis of cis-acting sequences and gene function in RNA3 of cucumber mosaic virus. Virology 193, 563-578.
    • (1993) Virology , vol.193 , pp. 563-578
    • Boccard, F.1    Baulcombe, D.2
  • 6
    • 0028951086 scopus 로고
    • Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination
    • Carpenter, C. D., Oh, J.-W, Zhang, C., and Simon, A. E. (1995). Involvement of a stem-loop structure in the location of junction sites in viral RNA recombination. J. Mol. Biol. 245, 608-622.
    • (1995) J. Mol. Biol. , vol.245 , pp. 608-622
    • Carpenter, C.D.1    Oh, J.-W.2    Zhang, C.3    Simon, A.E.4
  • 7
    • 0029655455 scopus 로고    scopus 로고
    • In vivo restoration of biologically active 3′ end of virus-associated RNAs by nonhomologous RNA recombination and replacement of a terminal motif
    • Carpenter, C. D., and Simon, A. E. (1996a). In vivo restoration of biologically active 3′ end of virus-associated RNAs by nonhomologous RNA recombination and replacement of a terminal motif. J. Virol. 70, 478-486.
    • (1996) J. Virol. , vol.70 , pp. 478-486
    • Carpenter, C.D.1    Simon, A.E.2
  • 8
    • 0030589460 scopus 로고    scopus 로고
    • In vivo repair of 3′-end deletions in a TCV satellite RNA may involve two abortive synthesis and priming events
    • Carpenter, C. D., and Simon, A. E. (1996b). In vivo repair of 3′-end deletions in a TCV satellite RNA may involve two abortive synthesis and priming events. Virology 226, 153-160.
    • (1996) Virology , vol.226 , pp. 153-160
    • Carpenter, C.D.1    Simon, A.E.2
  • 9
    • 0032524725 scopus 로고    scopus 로고
    • Analysis of sequences and structures required for viral satellite RNA accumulation by in vivo genetic selection
    • Carpenter, C. D., and Simon, A. E. (1998). Analysis of sequences and structures required for viral satellite RNA accumulation by in vivo genetic selection. Nucleic Acids Res. 26, 2426-2432.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2426-2432
    • Carpenter, C.D.1    Simon, A.E.2
  • 11
    • 0022652162 scopus 로고
    • High resolution mapping of carnation mottle virus-associated RNAs
    • Carrington, J. C., and Morris, T. J. (1986). High resolution mapping of carnation mottle virus-associated RNAs. Virology 150, 196-206.
    • (1986) Virology , vol.150 , pp. 196-206
    • Carrington, J.C.1    Morris, T.J.2
  • 12
    • 0023124026 scopus 로고
    • Structure and assembly of turnip crinkle virus. IV. Analysis of the coat protein gene and implications of the subunit primary structure
    • Carrington, J. C., Morris, T. J., Stockley, P. G., and Harrison, S. C. (1987). Structure and assembly of turnip crinkle virus. IV. Analysis of the coat protein gene and implications of the subunit primary structure. J. Mol. Biol. 194, 265-276.
    • (1987) J. Mol. Biol. , vol.194 , pp. 265-276
    • Carrington, J.C.1    Morris, T.J.2    Stockley, P.G.3    Harrison, S.C.4
  • 13
    • 0024278535 scopus 로고
    • Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity
    • Dreher, T. W., and Hall, T. C. (1988). Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity. J. Mol. Biol. 201, 31-40.
    • (1988) J. Mol. Biol. , vol.201 , pp. 31-40
    • Dreher, T.W.1    Hall, T.C.2
  • 15
    • 0028107359 scopus 로고
    • Solution structure of the 3′-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs
    • Felden, B., Florentz, C., Giege, R., and Westhof, E. (1994). Solution structure of the 3′-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs. J. Mol. Biol. 235, 508-531.
    • (1994) J. Mol. Biol. , vol.235 , pp. 508-531
    • Felden, B.1    Florentz, C.2    Giege, R.3    Westhof, E.4
  • 16
    • 0024044629 scopus 로고
    • Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA
    • French, R., and Ahlquist, P. (1988). Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA. J. Virol. 62, 2411-2420.
    • (1988) J. Virol. , vol.62 , pp. 2411-2420
    • French, R.1    Ahlquist, P.2
  • 17
    • 0024713001 scopus 로고
    • Mechanism of synthesis of turnip yellow mosaic virus coat protein subgenomic RNA
    • in vivo
    • Gargouri, R., Joshi, R. L., Bol, J. F., Astier-Manifacier, S., and Haenni, A.-L. (1989). Mechanism of synthesis of turnip yellow mosaic virus coat protein subgenomic RNA in vivo. Virology 171, 386-393.
    • (1989) Virology , vol.171 , pp. 386-393
    • Gargouri, R.1    Joshi, R.L.2    Bol, J.F.3    Astier-Manifacier, S.4    Haenni, A.-L.5
  • 18
    • 0031468352 scopus 로고    scopus 로고
    • RNA promoters located on (-)-strand of a subviral RNA associated with turnip crinkle virus
    • Guan, H., Song, C., and Simon, A. E. (1997). RNA promoters located on (-)-strand of a subviral RNA associated with turnip crinkle virus. RNA 3, 1401-1412.
    • (1997) RNA , vol.3 , pp. 1401-1412
    • Guan, H.1    Song, C.2    Simon, A.E.3
  • 19
    • 0026542276 scopus 로고
    • Turnip crinkle virus genes required for RNA replication and virus movement
    • Hacker, D. L., Petty, I. T. D., Wei, N., and Morris, T. J. (1992). Turnip crinkle virus genes required for RNA replication and virus movement. Virology 186, 1-8.
    • (1992) Virology , vol.186 , pp. 1-8
    • Hacker, D.L.1    Petty, I.T.D.2    Wei, N.3    Morris, T.J.4
  • 20
    • 0031277666 scopus 로고    scopus 로고
    • Satellite RNA-mediated resistance to turnip crinkle virus in Arabidopsis involves a reduction in virus movement
    • Kong, Q., Wang, J., and Simon, A. E. (1997). Satellite RNA-mediated resistance to turnip crinkle virus in Arabidopsis involves a reduction in virus movement. Plant Cell 9, 2051-2063.
    • (1997) Plant Cell , vol.9 , pp. 2051-2063
    • Kong, Q.1    Wang, J.2    Simon, A.E.3
  • 21
    • 0027504136 scopus 로고
    • Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences
    • Koonin, E. V., and Dolja, V. V. (1993). Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28, 375-430.
    • (1993) Crit. Rev. Biochem. Mol. Biol. , vol.28 , pp. 375-430
    • Koonin, E.V.1    Dolja, V.V.2
  • 22
    • 2642699794 scopus 로고
    • Rapid and efficient site-specific mutagenesis without phenotypic selection
    • Kunkel, T. A. (1985). Rapid and efficient site-specific mutagenesis without phenotypic selection. Proc. Natl. Acad. Sci. USA 82, 488-492.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 488-492
    • Kunkel, T.A.1
  • 23
    • 0032503243 scopus 로고    scopus 로고
    • Cell-to-cell movement of turnip crinkle virus is controlled by two small open reading frames that function in trans
    • Li, W.-Z., Qu, F., and Morris, T. J. (1998). Cell-to-cell movement of turnip crinkle virus is controlled by two small open reading frames that function in trans. Virology 244, 405-416.
    • (1998) Virology , vol.244 , pp. 405-416
    • Li, W.-Z.1    Qu, F.2    Morris, T.J.3
  • 24
    • 0022973884 scopus 로고
    • On the recognition of helical RNA by cobra venom V1 nuclease
    • Lowman, H. B., and Draper, D. E. (1986). On the recognition of helical RNA by cobra venom V1 nuclease. J. Biol. Chem. 261, 5396-5403.
    • (1986) J. Biol. Chem. , vol.261 , pp. 5396-5403
    • Lowman, H.B.1    Draper, D.E.2
  • 25
    • 0024284004 scopus 로고
    • Mutational analysis of the core and modulator sequences of BMV RNA3 subgenomic promoter
    • Marsh, L. E., Dreher, T. W., and Hall, T. C. (1988). Mutational analysis of the core and modulator sequences of BMV RNA3 subgenomic promoter. Nucleic Acids Res. 16, 981-995.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 981-995
    • Marsh, L.E.1    Dreher, T.W.2    Hall, T.C.3
  • 26
    • 0021933941 scopus 로고
    • Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA
    • Miller, W. A., Dreher, T. W., and Hall, T. C. (1985). Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA. Nature 313, 68-70.
    • (1985) Nature , vol.313 , pp. 68-70
    • Miller, W.A.1    Dreher, T.W.2    Hall, T.C.3
  • 28
    • 0029411737 scopus 로고
    • Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with arabidopsis thaliana ecotype Dijon
    • Oh, J.-W., Kong, Q., Song, C., and Carpenter, C. D., and Simon, A. E. (1995). Open reading frames of turnip crinkle virus involved in satellite symptom expression and incompatibility with arabidopsis thaliana ecotype Dijon. Mol. Plant-microbe Interact. 8, 979-987.
    • (1995) Mol. Plant-microbe Interact , vol.8 , pp. 979-987
    • Oh, J.-W.1    Kong, Q.2    Song, C.3    Carpenter, C.D.4    Simon, A.E.5
  • 29
    • 0026643534 scopus 로고
    • Requirement of ICR2-like sequences in the replication of brome mosaic virus genomic RNA
    • Pogue, G. P., Marsh, L. E., Connell, J. P., and Hall, T. C. (1992). Requirement of ICR2-like sequences in the replication of brome mosaic virus genomic RNA. Virology 188, 742-753.
    • (1992) Virology , vol.188 , pp. 742-753
    • Pogue, G.P.1    Marsh, L.E.2    Connell, J.P.3    Hall, T.C.4
  • 30
    • 0025236253 scopus 로고
    • Coronavirus transcription: Subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis
    • Sawicki, S. G., and Sawicki, D. L. (1990). Coronavirus transcription: Subgenomic mouse hepatitis virus replicative intermediates function in RNA synthesis. J. Virol. 64, 1050-1056.
    • (1990) J. Virol. , vol.64 , pp. 1050-1056
    • Sawicki, S.G.1    Sawicki, D.L.2
  • 31
    • 0028171034 scopus 로고
    • Genetics of mouse hepatitis-virus transcription: Evidence that subgenomic negative strands are functional templates
    • Schaad, M. C., and Baric, R. S. (1994). Genetics of mouse hepatitis-virus transcription: Evidence that subgenomic negative strands are functional templates. J. Virol. 68, 8169-8179.
    • (1994) J. Virol. , vol.68 , pp. 8169-8179
    • Schaad, M.C.1    Baric, R.S.2
  • 32
    • 0030761264 scopus 로고    scopus 로고
    • Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase
    • Siegel, R. W., Adkins, S., and Kao, C. C. (1997). Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase. Proc. Natl. Acad. Sci. USA 94, 11238-11243.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 11238-11243
    • Siegel, R.W.1    Adkins, S.2    Kao, C.C.3
  • 33
    • 0030425555 scopus 로고    scopus 로고
    • RNA recombination in turnip crinkle virus: Its role in formation of chimeric RNAs, multimers, and in 3′-end repair
    • Simon, A. E., and Nagy, P. D. (1996). RNA recombination in turnip crinkle virus: Its role in formation of chimeric RNAs, multimers, and in 3′-end repair. Semin. Virol. 7, 373-379.
    • (1996) Semin. Virol. , vol.7 , pp. 373-379
    • Simon, A.E.1    Nagy, P.D.2
  • 34
    • 0028786430 scopus 로고
    • Requirement of a 3′-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase
    • Song, C., and Simon, A. E. (1995). Requirement of a 3′-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase. J. Mol. Biol. 254, 6-14.
    • (1995) J. Mol. Biol. , vol.254 , pp. 6-14
    • Song, C.1    Simon, A.E.2
  • 35
    • 0031585575 scopus 로고    scopus 로고
    • Analysis in vivo of turnip crinkle virus satellite RNA C variants with mutations in the 3′-terminal minus-strand promoter
    • Stupina, V., and Simon, A. E. (1997). Analysis in vivo of turnip crinkle virus satellite RNA C variants with mutations in the 3′-terminal minus-strand promoter. Virology 238, 470-477.
    • (1997) Virology , vol.238 , pp. 470-477
    • Stupina, V.1    Simon, A.E.2
  • 36
    • 0025290933 scopus 로고
    • Cis-acting elements involved in replication of alfalfa mosaic virus RNAs in vitro
    • van der Kuyl, A. C., Langereis, K., Howing, C. J., Jaspars, E. M. J., and Bol, J. F. (1990). Cis-acting elements involved in replication of alfalfa mosaic virus RNAs in vitro. Virology 176, 346-354.
    • (1990) Virology , vol.176 , pp. 346-354
    • Van Der Kuyl, A.C.1    Langereis, K.2    Howing, C.J.3    Jaspars, E.M.J.4    Bol, J.F.5
  • 37
    • 0025738630 scopus 로고
    • Deletion analysis of cis- and trans-acting elements involved in replication of alfalfa mosaic virus RNA3 in vivo
    • van der Kuyl, A. C., Neeleman, L., and Bol, J. F. (1991). Deletion analysis of cis- and trans-acting elements involved in replication of alfalfa mosaic virus RNA3 in vivo. Virology 183, 687-694.
    • (1991) Virology , vol.183 , pp. 687-694
    • Van Der Kuyl, A.C.1    Neeleman, L.2    Bol, J.F.3
  • 38
    • 0028834373 scopus 로고
    • Characterization of sequences controlling the synthesis of alfalfa mosaic virus subgenomic RNA in vivo
    • van der Vossen, E. A. G., Notenboom, T., and Bol, J. F. (1995). Characterization of sequences controlling the synthesis of alfalfa mosaic virus subgenomic RNA in vivo. Virology 212, 663-672.
    • (1995) Virology , vol.212 , pp. 663-672
    • Van Der Vossen, E.A.G.1    Notenboom, T.2    Bol, J.F.3
  • 39
    • 0030957051 scopus 로고    scopus 로고
    • Analysis of the two subgenomic RNA promoters for turnip crinkle virus in vivo and in vitro
    • Wang, J., and Simon, A. E. (1997). Analysis of the two subgenomic RNA promoters for turnip crinkle virus in vivo and in vitro. Virology 232, 174-186.
    • (1997) Virology , vol.232 , pp. 174-186
    • Wang, J.1    Simon, A.E.2
  • 40
    • 0029123162 scopus 로고
    • Immunodetection, expression strategy and complementation of turnip crinkle virus p28 and p88 replication components
    • White, K. A., Skuzeski, J. M., Li, W., Wei, N., and Morris, T. J. (1995). Immunodetection, expression strategy and complementation of turnip crinkle virus p28 and p88 replication components. Virology 211, 525-534.
    • (1995) Virology , vol.211 , pp. 525-534
    • White, K.A.1    Skuzeski, J.M.2    Li, W.3    Wei, N.4    Morris, T.J.5


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