메뉴 건너뛰기




Volumn 185, Issue 18, 2003, Pages 5500-5507

DNA topoisomerase III from the hyperthermophilic archaeon Sulfolobus solfataricus with specific DNA cleavage activity

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; COBALT; COPPER ION; DNA; DNA TOPOISOMERASE; DNA TOPOISOMERASE III; MANGANESE; NICKEL; UNCLASSIFIED DRUG;

EID: 0041335376     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.18.5500-5507.2003     Document Type: Article
Times cited : (21)

References (37)
  • 1
    • 34248359477 scopus 로고    scopus 로고
    • The role of the Zn(II) binding domain in the mechanism of E. coli DNA topoisomerase I
    • Ahumada, A., and Y. C. Tse-Dinh. 2002. The role of the Zn(II) binding domain in the mechanism of E. coli DNA topoisomerase I. BMC Biochem. 3:13.
    • (2002) BMC Biochem. , vol.3 , pp. 13
    • Ahumada, A.1    Tse-Dinh, Y.C.2
  • 2
    • 0030987132 scopus 로고    scopus 로고
    • An atypical topoisomerase II from Archaea with implications for meiotic recombination
    • Bergerat, A., B. de Massy, D. Gadelle, P. C. Varoutas, A. Nicolas, and P. Forterre. 1997. An atypical topoisomerase II from Archaea with implications for meiotic recombination. Nature 386:414-417.
    • (1997) Nature , vol.386 , pp. 414-417
    • Bergerat, A.1    De Massy, B.2    Gadelle, D.3    Varoutas, P.C.4    Nicolas, A.5    Forterre, P.6
  • 3
    • 0032577570 scopus 로고    scopus 로고
    • DNA topoisomerase I from Mycobacterium smegmatis. An enzyme with distinct features
    • Bhaduri, T., T. K. Bagui, D. Sikder, and V. Nagaraja. 1998. DNA topoisomerase I from Mycobacterium smegmatis. An enzyme with distinct features. J. Biol. Chem. 273:13925-13932.
    • (1998) J. Biol. Chem. , vol.273 , pp. 13925-13932
    • Bhaduri, T.1    Bagui, T.K.2    Sikder, D.3    Nagaraja, V.4
  • 4
    • 0031936513 scopus 로고    scopus 로고
    • Reverse gyrase from the hyperthermophilic bacterium Thermotoga maritima: Properties and gene structure
    • Bouthier de la Tour, C., C. Portemer, H. Kaltoum, and M. Duguet. 1998. Reverse gyrase from the hyperthermophilic bacterium Thermotoga maritima: properties and gene structure. J. Bacteriol. 180:274-281.
    • (1998) J. Bacteriol. , vol.180 , pp. 274-281
    • Bouthier de la Tour, C.1    Portemer, C.2    Kaltoum, H.3    Duguet, M.4
  • 5
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • Champoux, J. J. 2001. DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem. 70:369-413.
    • (2001) Annu. Rev. Biochem. , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 6
    • 0032513296 scopus 로고    scopus 로고
    • Identification of active site residues in Escherichia coli DNA topoisomerase I
    • Chen, S. J., and J. C. Wang. 1998. Identification of active site residues in Escherichia coli DNA topoisomerase I. J. Biol. Chem. 273:6050-6056.
    • (1998) J. Biol. Chem. , vol.273 , pp. 6050-6056
    • Chen, S.J.1    Wang, J.C.2
  • 7
    • 0025965065 scopus 로고
    • Formation of nucleosomes on positively supercoiled DNA
    • Clark, D. J., and G. Felsenfeld. 1991. Formation of nucleosomes on positively supercoiled DNA. EMBO J. 10:387-395.
    • (1991) EMBO J. , vol.10 , pp. 387-395
    • Clark, D.J.1    Felsenfeld, G.2
  • 9
    • 0025770051 scopus 로고
    • Mechanistic studies on E. coli DNA topoisomerase I: Divalent ion effects
    • Domanico, P. L., and Y. C. Tse-Dinh. 1991. Mechanistic studies on E. coli DNA topoisomerase I: divalent ion effects. J. Inorg. Biochem. 42:87-96.
    • (1991) J. Inorg. Biochem. , vol.42 , pp. 87-96
    • Domanico, P.L.1    Tse-Dinh, Y.C.2
  • 10
    • 0037335662 scopus 로고    scopus 로고
    • Phylogenomics of type II DNA topoisomerases
    • Gadelle, D., J. Filee, C. Buhler, and P. Forterre. 2003. Phylogenomics of type II DNA topoisomerases. Bioessays 25:232-242.
    • (2003) Bioessays , vol.25 , pp. 232-242
    • Gadelle, D.1    Filee, J.2    Buhler, C.3    Forterre, P.4
  • 12
    • 0034705341 scopus 로고    scopus 로고
    • C-terminal domains of Escherichia coli topoisomerase I belong to the zinc-ribbon superfamily
    • Grishin, N. V. 2000. C-terminal domains of Escherichia coli topoisomerase I belong to the zinc-ribbon superfamily. J. Mol. Biol. 299:1165-1177.
    • (2000) J. Mol. Biol. , vol.299 , pp. 1165-1177
    • Grishin, N.V.1
  • 13
    • 0033558173 scopus 로고    scopus 로고
    • Analysis of DNA cleavage by reverse gyrase from Sulfolobus shibatae B12
    • Jaxel, C., M. Duguet, and M. Nadal. 1999. Analysis of DNA cleavage by reverse gyrase from Sulfolobus shibatae B12. Eur. J. Biochem. 260:103-111.
    • (1999) Eur. J. Biochem. , vol.260 , pp. 103-111
    • Jaxel, C.1    Duguet, M.2    Nadal, M.3
  • 14
    • 0026795617 scopus 로고
    • Identification of the yeast TOP3 gene product as a single strand-specific DNA topoisomerase
    • Kim, R. A., and J. C. Wang. 1992. Identification of the yeast TOP3 gene product as a single strand-specific DNA topoisomerase. J. Biol. Chem. 267:17178-17185.
    • (1992) J. Biol. Chem. , vol.267 , pp. 17178-17185
    • Kim, R.A.1    Wang, J.C.2
  • 16
    • 0017687391 scopus 로고
    • Purification and characterization of an omega protein from Micrococcus luteus
    • Kung, V. T., and J. C. Wang. 1977. Purification and characterization of an omega protein from Micrococcus luteus. J. Biol. Chem. 252:5398-5402.
    • (1977) J. Biol. Chem. , vol.252 , pp. 5398-5402
    • Kung, V.T.1    Wang, J.C.2
  • 17
    • 0028115776 scopus 로고
    • Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I
    • Lima, C. D., J. C. Wang, and A. Mondragon. 1994. Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature 367:138-146.
    • (1994) Nature , vol.367 , pp. 138-146
    • Lima, C.D.1    Wang, J.C.2    Mondragon, A.3
  • 18
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu, L. F., and J. C. Wang. 1987. Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. USA 84:7024-7027.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 19
    • 0030956537 scopus 로고    scopus 로고
    • DNA topology in hyperthermophilic archaea: Reference states and their variation with growth phase, growth temperature, and temperature stresses
    • Lopez-Garcia, P., and P. Forterre. 1997. DNA topology in hyperthermophilic archaea: reference states and their variation with growth phase, growth temperature, and temperature stresses. Mol. Microbiol. 23:1267-1279.
    • (1997) Mol. Microbiol. , vol.23 , pp. 1267-1279
    • Lopez-Garcia, P.1    Forterre, P.2
  • 20
    • 2642690670 scopus 로고    scopus 로고
    • In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth
    • Lopez-Garcia, P., S. Knapp, R. Ladenstein, and P. Forterre. 1998. In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth. Nucleic Acids Res. 26:2322-2328.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2322-2328
    • Lopez-Garcia, P.1    Knapp, S.2    Ladenstein, R.3    Forterre, P.4
  • 21
    • 0031957673 scopus 로고    scopus 로고
    • Small abundant DNA binding proteins from the thermophilic archaeon Sulfolobus shibatae constrains negative DNA supercoils
    • Mai, V. Q., X. Chen, R. Hong, and L. Huang. 1998. Small abundant DNA binding proteins from the thermophilic archaeon Sulfolobus shibatae constrains negative DNA supercoils. J. Bacteriol. 180:2560-2563.
    • (1998) J. Bacteriol. , vol.180 , pp. 2560-2563
    • Mai, V.Q.1    Chen, X.2    Hong, R.3    Huang, L.4
  • 22
    • 0025144958 scopus 로고
    • Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I
    • Shuman, S., and J. Prescott. 1990. Specific DNA cleavage and binding by vaccinia virus DNA topoisomerase I. J. Biol. Chem. 265:17826-17836.
    • (1990) J. Biol. Chem. , vol.265 , pp. 17826-17836
    • Shuman, S.1    Prescott, J.2
  • 23
    • 0034656050 scopus 로고    scopus 로고
    • Determination of the recognition sequence of Mycobacterium smegmatis topoisomerase I on mycobacterial genomic sequences
    • Sikder, D., and V. Nagaraja. 2000. Determination of the recognition sequence of Mycobacterium smegmatis topoisomerase I on mycobacterial genomic sequences. Nucleic Acids Res. 28:1830-1837.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 1830-1837
    • Sikder, D.1    Nagaraja, V.2
  • 24
    • 0021769843 scopus 로고
    • Escherichia coli DNA topoisomerase III: Purification and characterization of a new type I enzyme
    • Srivenugopal, K. S., D. Lockshon, and D. R. Morris. 1984. Escherichia coli DNA topoisomerase III: purification and characterization of a new type I enzyme. Biochemistry 23:1899-1906.
    • (1984) Biochemistry , vol.23 , pp. 1899-1906
    • Srivenugopal, K.S.1    Lockshon, D.2    Morris, D.R.3
  • 25
    • 0022357883 scopus 로고
    • Differential modulation by spermidine of reactions catalyzed by type I prokaryotic and eukaryotic topoisomerases
    • Srivenugopal, K. S., and D. R. Morris. 1985. Differential modulation by spermidine of reactions catalyzed by type I prokaryotic and eukaryotic topoisomerases. Biochemistry 24:4766-4771.
    • (1985) Biochemistry , vol.24 , pp. 4766-4771
    • Srivenugopal, K.S.1    Morris, D.R.2
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0019332581 scopus 로고
    • Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA
    • Tse, Y. C., K. Kirkegaard, and J. C. Wang. 1980. Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA. J. Biol. Chem. 255:5560-5565.
    • (1980) J. Biol. Chem. , vol.255 , pp. 5560-5565
    • Tse, Y.C.1    Kirkegaard, K.2    Wang, J.C.3
  • 28
    • 0023739410 scopus 로고
    • Escherichia coli DNA topoisomerase I is a zinc metalloprotein with three repetitive zinc-binding domains
    • Tse-Dinh, Y. C., and R. K. Beran-Steed. 1988. Escherichia coli DNA topoisomerase I is a zinc metalloprotein with three repetitive zinc-binding domains. J. Biol. Chem. 263:15857-15859.
    • (1988) J. Biol. Chem. , vol.263 , pp. 15857-15859
    • Tse-Dinh, Y.C.1    Beran-Steed, R.K.2
  • 29
    • 0035824588 scopus 로고    scopus 로고
    • Hyperthermophilic topoisomerase I from Thermotoga maritima. A very efficient enzyme that functions independently of zinc binding
    • Viard, T., V. Lamour, M. Duguet, and C. Bouthier de la Tour. 2001. Hyperthermophilic topoisomerase I from Thermotoga maritima. A very efficient enzyme that functions independently of zinc binding. J. Biol. Chem. 276:46495-46503.
    • (2001) J. Biol. Chem. , vol.276 , pp. 46495-46503
    • Viard, T.1    Lamour, V.2    Duguet, M.3    Bouthier de la Tour, C.4
  • 30
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • Wang, J. C. 1996. DNA topoisomerases. Annu. Rev. Biochem. 65:635-692.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 31
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • Wang, J. C. 2002. Cellular roles of DNA topoisomerases: a molecular perspective. Nat. Rev. Mol. Cell Biol. 3:430-440.
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 32
    • 0033917479 scopus 로고    scopus 로고
    • An abundant DNA binding protein from the hyperthermophilic archaeon Sulfolobus shibatae affects DNA supercoiling in a temperature-dependent fashion
    • Xue, H., R. Guo, Y. Wen, D. Liu, and L. Huang. 2000. An abundant DNA binding protein from the hyperthermophilic archaeon Sulfolobus shibatae affects DNA supercoiling in a temperature-dependent fashion. J. Bacteriol. 182:3929-3933.
    • (2000) J. Bacteriol. , vol.182 , pp. 3929-3933
    • Xue, H.1    Guo, R.2    Wen, Y.3    Liu, D.4    Huang, L.5
  • 33
    • 0028240122 scopus 로고
    • The carboxyl-terminal residues of Escherichia coli DNA topoisomerase III are involved in substrate binding
    • Zhang, H. L., and R. J. DiGate. 1994. The carboxyl-terminal residues of Escherichia coli DNA topoisomerase III are involved in substrate binding. J. Biol. Chem. 269:9052-9059.
    • (1994) J. Biol. Chem. , vol.269 , pp. 9052-9059
    • Zhang, H.L.1    DiGate, R.J.2
  • 34
    • 0028824645 scopus 로고
    • Escherichia coli DNA topoisomerase III is a site-specific DNA binding protein that binds asymmetrically to its cleavage site
    • Zhang, H. L., S. Malpure, and R. J. DiGate. 1995. Escherichia coli DNA topoisomerase III is a site-specific DNA binding protein that binds asymmetrically to its cleavage site. J. Biol. Chem. 270:23700-23705.
    • (1995) J. Biol. Chem. , vol.270 , pp. 23700-23705
    • Zhang, H.L.1    Malpure, S.2    DiGate, R.J.3
  • 35
    • 0010107939 scopus 로고    scopus 로고
    • The role of the carboxyl-terminal amino acid residues in Escherichia coli DNA topoisomerase III-mediated catalysis
    • Zhang, H. L., S. Malpure, Z. Li, H. Hiasa, and R. J. DiGate. 1996. The role of the carboxyl-terminal amino acid residues in Escherichia coli DNA topoisomerase III-mediated catalysis. J. Biol. Chem. 271:9039-9045.
    • (1996) J. Biol. Chem. , vol.271 , pp. 9039-9045
    • Zhang, H.L.1    Malpure, S.2    Li, Z.3    Hiasa, H.4    DiGate, R.J.5
  • 36
    • 0030960325 scopus 로고    scopus 로고
    • Effect of Mg(II) binding on the structure and activity of Escherichia coli DNA topoisomerase I
    • Zhu, C. X., C. J. Roche, and Y. C. Tse-Dinh. 1997. Effect of Mg(II) binding on the structure and activity of Escherichia coli DNA topoisomerase I. J. Biol. Chem. 272:16206-16210.
    • (1997) J. Biol. Chem. , vol.272 , pp. 16206-16210
    • Zhu, C.X.1    Roche, C.J.2    Tse-Dinh, Y.C.3
  • 37
    • 0035859935 scopus 로고    scopus 로고
    • Type I topoisomerase activity is required for proper chromosomal segregation in Escherichia coli
    • Zhu, Q., P. Pongpech, and R. J. DiGate. 2001. Type I topoisomerase activity is required for proper chromosomal segregation in Escherichia coli. Proc. Natl. Acad. Sci. USA 98:9766-9771.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9766-9771
    • Zhu, Q.1    Pongpech, P.2    DiGate, R.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.