Identification of Alexandrium affine and A. margalefii (Dinophyceae) using DNA sequencing and LSU rDNA-based RFLP-PCR assays

Phycologia

Volumn 42, Issue 3, 2003, Pages 261-268

  Band Schmidt, Christine Johanna ^a   Lilly, Emily L ^b   Anderson, Donald M ^b  

^a CENTRO DE INVESTIGACIONES BIOLÓGICAS DEL NOROESTE   (Mexico)

^b WOODS HOLE OCEANOGRAPHIC INSTITUTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALEXANDRIUM; ALEXANDRIUM AFFINE; ALEXANDRIUM MARGALEFII; ALGAE; DINOPHYCEAE; EUKARYOTA;

EID: 0038817964     PISSN: 00318884     EISSN: None     Source Type: Journal    
DOI: 10.2216/i0031-8884-42-3-261.1     Document Type: Article

References (50)

1. ADACHI M., SAKO Y. & ISHIDA Y. 1994. Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae). Journal of Phycology 30: 857-863.
2. ANDERSON D.M. 1989. Toxic algal blooms and red tides: a global perspective. In: Red tides: biology, environmental science and toxicology (Ed. by T. Okaichi, D.M. Anderson & T. Nemoto), pp. 11-20. Elsevier, New York.
3. ANDERSON D.M. 1998. Physiology and bloom dynamics of toxic Alexandrium species, with emphasis in life cycle transitions. In: Physiological ecology of harmful algal blooms (Ed. by D.M. Anderson, A.D. Cembella & G.M. Hallegraeff), pp. 29-48. NATO ASI series, vol. G 41. Springer, Berlin.
4. ANDERSON D.M., KULIS D.M. & BINDER B.J. 1984. Sexuality and cyst formation in the dinoflagellate Gonyaulax tamarensis: cyst yield in batch cultures. Journal of Phycology 20: 418-425.
5. ANDERSON D.M., FUKUYO Y. & MATSUOKA K. 1995. Cyst methodologies. In: Manual on harmful marine microalgae (Ed. by G.M. Hallegraeff, D.M. Anderson & A.D. Cembella), pp. 229-249. IOC Manuals and Guides no. 33. UNESCO, Paris.
6. BALECH E. 1992. The genus Alexandrium Halim (Dinoflagellata). Sherkin Island Marine Station Publication, Sherkin Island, County Cork, Ireland. 151 pp.
7. BAND-SCHMIDT C.J., LECHUGA-DEVÉZE C.H., KULIS D.M. & ANDERSON D.M. 2003. Culture studies of Alexandrium affine (Dinophyceae), a non-toxic cyst forming dinoflagellate from Bahía Concepción, Gulf of California. Botanica Marina 46: 44-54.
8. CORTÉS-ALTAMIRANO R. & ALONSO-RODRÍGUEZ R. 1997. Mareas rojas durante 1997 en la bahía de Mazatlán, Sinaloa, México. Ciencias del Mar, Universidad Autónoma de Sinaloa 15: 31-37.
9. CORTÉS-ALTAMIRANO R., MUÑOZ-CABRERA L. & SOTOMAYOR-NAVARRO O. 1993. Envenenamiento paralítico por mariscos (PSP), causado por el dinoflagelado Pyrodinium bahamense var. compressum en la costa suroeste de México. Anales del Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México 20: 43-54.
10. DE SALAS M.F., VAN EMMERIK M.J. & HALLEGRAEFF G.M. 2001. Toxic Australian Alexandrium dinoflagellates: introduced or indigenous? In: Harmful algal blooms 2000 (Ed. by G.M. Hallegraeff, S.I. Blackburn, C.J. Bolch & R.J. Lewis), pp. 214-217. Intergovernmental Oceanographic Commission of UNESCO, Paris.
11. DESTOMBE C., CEMBELLA A.D., MURPHY C.A. & RAGAN M.A. 1992. Nucleotide sequence of the 18S ribosomal RNA genes from the marine dinoflagellate Alexandrium tamarense (Gonyaulacales, Dinophyta). Phycologia 31: 121-124.
12. FUKUYO Y., YOSHIDA K. & INOUE H. 1985. Protogonyaulax in Japanese coastal waters. In: Toxic dinoflagellates (Ed. by D.M. Anderson, A.W. White & D.G. Baden), pp. 27-32. Elsevier-North Holland, New York.
13. GÁRATE-LIZÁRRAGA I. 1995. Mareas rojas en Bahía Concepción, B.C.S. México. Boletín No. 40, Centro Interdisciplinario de Ciencias Marinas, Instituto Politécnico Nacional, La Paz, Mexico. 2 pp.
14. GÁRATE-LIZÁRRAGA I., SIQUEIROS BELTRONES D.A. & LECHUGA-DEVÉZE C.H. 1990. Estructura de las asociaciones microfitoplanctónicas de la región central del Golfo de California y su distribución espacial en el otoño de 1986. Ciencias Marinas 16: 131-153.
15. GÁRATE-LIZÁRRAGA I., LÓPEZ-CORTÉS D.J., BUSTILLOS-GUZMÁN J.J., HERNÁNDEZ-SANDOVAL F.E. & MURILLO-MURILLO I. 2001a. Physicochemical characteristics and phytoplankton biomass during El Niño 1997-1998 in Bahía Concepción, Gulf of California. In: Conference abstracts, American Society of Limnology and Oceanography, Albuquerque, New Mexico. p. 56.
16. GÁRATE-LIZÁRRAGA I., BUSTILLOS-GUZMÁN J.J., MORQUECHO L. & LECHUGA-DEVÉZE C.H. 2001b. First outbreak of Cochlodinium polykrikoides in the Gulf of California. Harmful Algae News 21: 1-7.
17. GÁRATE-LIZÁRRAGA I., HERNÁNDEZ-OROZCO M.L., BAND-SCHMIDT C.J. & CASILLAS-SERRANO G. 2001c. Red tides along the coasts of Baja California Sur (1984-2001). Oceanides 16: 21-26.
18. GARCÍA E. 1988. Modificaciones al sistema de clasificación climática de Köppen. Larios, Mexico City. 220 pp.
19. GIBSON T., HIGGINS D.G. & THOMPSON J. 2001. Clustal X: improved software for multiple sequence alignment. EMBL, Heidelberg.
20. GÓNGORA-GONZÁLEZ D.T. 2001. Estructura microfitoplanctónica y condiciones hidrológicas relacionadas con la presencia de dinoflagelados tóxicos en bahía Concepción, B.C.S. México. Bachelor's degree thesis (BSc). Universidad Autónoma de Baja California Sur, La Paz, Mexico. 52 pp.
21. HALLEGRAEFF G.M. & BOLCH C.J. 1991. Transport of toxic dinoflagellate cysts via ships' ballast water. Marine Pollution Bulletin 22: 27-30.
22. HALLEGRAEFF G.M. & BOLCH C.J. 1992. Transport of diatom and dinoflagellate resting spores in ships' ballast water: implications for plankton biogeography and aquaculture. Journal of Plankton Research 14: 1067-1084.
23. HALLEGRAEFF G.M., BOLCH C.J., BLACKBURN S.I. & OSHIMA Y. 1991. Species of the toxigenic dinoflagellate genus Alexandrium in southeastern Australian waters. Botanica Marina 34: 575-587.
24. HALLEGRAEFF G.M., VALENTINE J.P., MARSHALL J.A. & BOLCH C.J. 1997. Temperature tolerances of toxic dinoflagellate cysts: application to the treatment of ships' ballast water. Aquatic Ecology 31: 47-52.
25. HEREDIA-TAPIA A., ARREDONDO-VEGA B.O., NUÑEZ-VÁZQUEZ E.J., YASUMOTO T., YASUDA M. & OCHOA J.L. 2002. Isolation of Prorocentrum lima (syn. Exuviaella lima) and diarrhetic shellfish poisoning (DSP) risk assessment in the Gulf of California. Mexico. Toxicon 40: 1121-1127.
26. LECHUGA-DEVÉZE C.H. & MORQUECHO-ESCAMILLA M.L. 1998. Early spring potentially harmful phytoplankton in Bahía Concepción, Gulf of California. Bulletin of Marine Science 63: 503-512.
27. LECHUGA-DEVÉZE C.H., MORQUECHO-ESCAMILLA M.L., REYES-SALINAS A. & HERNÁNDEZ-ALFONSO J.R. 2000. Environmental natural disturbances at Bahía Concepción, Gulf of California. In: Aquatic ecosystems of Mexico: status and scope (Ed. by M. Munawar, S.G. Lawrence, I.F. Munawar & D.F. Malley), pp. 245-255. Bakhuys, Leiden, The Netherlands.
28. LEINONENDUFRESNE E., TARONCHER-OLDENBURG O. & ANDERSON D.M. 2000. The global biogeography of the genus Alexandrium. In: Abstracts, Ninth International Conference on Harmful Algal Blooms, Hobart, Tasmania. p. 163.
29. LENAERS G., MAROTEAUX L., MICHOT B. & HERZOG M. 1989. Dinoflagellates in evolution. A molecular phylogenetic analysis of large subunit ribosomal RNA. Journal of Molecular Evolution 29: 40-51.
30. LENAERS G., SCHOLIN C., BHAUD Y., SAINT-HILARIE D. & HERZOG M. 1991. A molecular phylogeny of dinoflagellate protists (Pyrrophyta) inferred from the sequence of 24S rRNA divergent domains D1 and D8. Journal of Molecular Evolution 32: 53-63.
31. LICEA S., MORENO J.L., SANTOYO H. & FIGUEROA G. 1995. Dinoflageladas del Golfo de California. Universidad Autónoma de Baja California Sur, La Paz, Baja California Sur. SEP-FOMES, Mexico. 165 pp.
32. LILLY E.L., KULIS D.M., GENTIEN P. & ANDERSON D.M. 2002. Paralytic shellfish poisoning toxins in France linked to a human-introduced strain of Alexandrium catenella from the western Pacific: evidence from DNA and toxin analysis. Journal of Plankton Research 24: 443-452.
33. MARTÍNEZ-LÓPEZ A. & GÁRATE-LIZÁRRAGA I. 1994. Cantidad y calidad de la materia orgánica particulada en Bahía Concepción, en la temporada de reproducción de la almeja catarina Argopecten circularis (Sowerby, 1835). Ciencias Marinas 20: 301-320.
34. MATEO-CID L.E., SÁNCHEZ-RODRÍGUEZ I., RODRÍGUEZ-MONTESINOS E. & CASAS-VALDÉZ M.M. 1993. Estudio florístico de las algas marinas bentónicas de Bahía Concepción, B.C.S. México. Ciencias Marinas 19: 41-60.
35. MEDLIN L.K., LANGE M., WELLBROCK U., DONNER G., ELBRÄCHTER M., HUMMERT C. & LUCKAS B. 1998. Sequence comparisons link toxic European isolates of Alexandrium tamarense from the Orkney Islands to toxic North American stocks. European Journal of Protistology 34: 329-335.
36. MICHOT B. & BACHELLERIE J.P. 1987. Comparison of long subunit rRNAs reveal some eukaryote specific elements of secondary structure. Biochimie 69: 11-23.
37. MICHOT B., HASSOUNA N. & BACHELLERIE J.P. 1984. Secondary structure of mouse 28S rRNA and general model for the folding of the large RNA in eukaryotes. Nucleic Acids Research 12: 4259-4279.
38. MORQUECHO M.L., BAND-SCHMIDT C.J., LECHUGA-DEVÉZE C.H. & GÓNGORA D. 2000. Should Bahía Concepción, Mexico, be a model for harmful algal blooms? Harmful Algae News 20: 12-13.
39. SCHOLIN C.A. & ANDERSON D.M. 1994. Identification of group and strain specific genetic markers for globally distributed Alexandrium (Dinophyceae). I. RFLP analysis of SSU rRNA genes. Journal of Phycology 30: 744-754.
40. SCHOLIN C.A. & ANDERSON D.M. 1996. LSU rDNA-based RFLP assays for discriminating species and strains of Alexandrium (Dinophyceae). Journal of Phycology 32: 1022-1035.
41. SCHOLIN C.A., HERZOG M., SOGIN M. & ANDERSON D.M. 1994. Identification of group and strain specific genetic markers for globally distributed Alexandrium (Dinophyceae). II. Sequence analysis of a fragment of the LSU rRNA gene. Journal of Phycology 30: 999-1011.
42. SCHOLIN C.A., HALLEGRAEFF G.M. & ANDERSON D.M. 1995. Molecular evolution of the Alexandrium tamarense 'species complex' (Dinophyceae): dispersal in the North American and west Pacific regions. Phycologia 34: 472-485.
43. SHUMILIN E., GODINEZ-ORTA L., CRUZ-OROZCO R., SAPOZHNIKOV D., SOLIS-NUÑEZ S. & SAPOZHNIKOV Y. 1996. Características litológicogeoquímicas de los sedimentos superficiales de Bahía Concepción, B.C.S. Actas Instituto Nacional de Geoquímica (INAGEQ) 2: 79-84.
44. SIERRA-BELTRÁN A.P., MORQUECHO-ESCAMILLA M.L., LECHUGA-DEVÉZE C. & OCHOA J.L. 1996. PSP monitoring program at Baja Californial Sur, Mexico. In: Harmful and toxic algal blooms (Ed. by T. Yasumoto, Y. Oshima & Y. Fukuyo), pp. 105-108. IOC-UNESCO, Paris.
45. SIERRA-BELTRÁN A.P., CRUZ A., NÚÑEZ E., DEL VILLAR L.M., CERECERO J. & OCHOA J.L. 1998. An overview of the marine food poisoning in México. Toxicon 36: 1493-1502.
46. SMAYDA T.J. 1990. Novel and nuisance phytoplankton blooms in the sea: evidence for a global epidemic. In: Toxic marine phytoplankton (Ed. by E. Graneli, B. Sundstrom, L. Edler & D.M. Anderson), pp. 29-40. Elsevier-North Holland, New York.
47. SPALTER R.A., WALSH D., REEVES R.A., SAUL D.J., GRAY R.D., BERGQUIST P.L., MACKENZIE L. & BERGQUIST P.R. 1997. Sequence heterogeneity of the ribosomal RNA intergenic region for the detection of Alexandrium species. Biochemical Systematics and Ecology 25: 231-239.
48. SWOFFORD D. 2002. PAUP: phylogenetic analysis using parsimony. version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
49. VERDUGO-DÍAZ G. 1997. Cambios estacionales del fitoplancton y de la composición bioquímica del material orgánico particulado en bahía Concepción, B.C.S. Master's degree thesis (MSc). Centro Interdisciplinario de Ciencias Marinas, Instituto Politécnico Nacional, La Paz, Mexico. 100 pp.
50. WALSH D., REEVES R.A., SAUL D.J., GRAY R.D., MACKENZIE L., BERGQUIST P.R. & BERGQUIST P.L. 1998. Heterogeneity of SSU and LSU rDNA sequences of Alexandrium species. Biochemical Systematics and Ecology 26: 495-509.