메뉴 건너뛰기




Volumn 25, Issue 3, 1997, Pages 231-239

Sequence heterogeneity of the ribosomal RNA intergenic region Alexandrium species

Author keywords

Alexandrium; Dinophyceae; intergenic transcribed spacer sequences; molecular probes; paralytic shellfish poisoning; PSP; toxic algae; toxic phytoplankton

Indexed keywords

RIBOSOME RNA;

EID: 0030920896     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0305-1978(96)00111-1     Document Type: Article
Times cited : (13)

References (43)
  • 1
    • 0028311744 scopus 로고
    • Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae)
    • Adachi, M., Sako, Y. and Ishida, Y. (1994) Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5.8S regions in Japanese Alexandrium species (Dinophyceae). J. Phycol. 30, 857-863.
    • (1994) J. Phycol. , vol.30 , pp. 857-863
    • Adachi, M.1    Sako, Y.2    Ishida, Y.3
  • 2
    • 0001958639 scopus 로고
    • Ribosomal DNA internal transcribed spacer regions (ITS) define species of the genus Alexandrium
    • Lassus, P., Arzul, G., Erard, E., Gentien, P. and Marcaillou, C., eds, Technique et Documentation-Lavoisier, Intercept Ltd.
    • Adachi, M., Sako, Y., Uchida, A. and Ishida, Y. (1995) Ribosomal DNA internal transcribed spacer regions (ITS) define species of the genus Alexandrium. In Harmful Marine Algal Blooms (Lassus, P., Arzul, G., Erard, E., Gentien, P. and Marcaillou, C., eds), pp. 15-20. Technique et Documentation-Lavoisier, Intercept Ltd.
    • (1995) Harmful Marine Algal Blooms , pp. 15-20
    • Adachi, M.1    Sako, Y.2    Uchida, A.3    Ishida, Y.4
  • 3
    • 0029744218 scopus 로고    scopus 로고
    • Analysis of Alexandrium (Dinophyceae) species using sequences of the 5.8S ribosomal RNA and internal transcribed spacer regions
    • Adachi, M., Sako, Y. and Ishida, Y. (1996) Analysis of Alexandrium (Dinophyceae) species using sequences of the 5.8S ribosomal RNA and internal transcribed spacer regions. J. Phycol. 32, 424-432.
    • (1996) J. Phycol. , vol.32 , pp. 424-432
    • Adachi, M.1    Sako, Y.2    Ishida, Y.3
  • 4
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R. I., Binder, B. J., Olson, R. J., Chrisholm, S. W., Devereux, R. D. and Stahl, D. A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56, 1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chrisholm, S.W.4    Devereux, R.D.5    Stahl, D.A.6
  • 5
    • 0025877324 scopus 로고
    • Identification in situ and phylogeny of uncultured bacterial endosymbionts
    • Amann, R. I., Springer, N., Ludwig, W., Gortz, H.-D. and Schleifer, K.-H. (1991) Identification in situ and phylogeny of uncultured bacterial endosymbionts. Nature 351, 161-164.
    • (1991) Nature , vol.351 , pp. 161-164
    • Amann, R.I.1    Springer, N.2    Ludwig, W.3    Gortz, H.-D.4    Schleifer, K.-H.5
  • 6
    • 0002408573 scopus 로고
    • Toxin variability in Alexandrium species
    • Granéli, E., Sundström, B., Edler, L. and Anderson, D. M., eds, Elsevier, New York
    • Anderson, D. M. (1990) Toxin variability in Alexandrium species. In Toxic Marine Phytoplankton (Granéli, E., Sundström, B., Edler, L. and Anderson, D. M., eds), pp. 41-51. Elsevier, New York.
    • (1990) Toxic Marine Phytoplankton , pp. 41-51
    • Anderson, D.M.1
  • 7
    • 0002330345 scopus 로고
    • rDNA, evolution over a billion years
    • Dutta, S. K., ed., CRC Press, Boca Raton, FL
    • Appels, R. and Honeycutt, R. L. (1986) rDNA, evolution over a billion years. In DNA Systematics, Volume II, Plants (Dutta, S. K., ed.), pp. 81-135. CRC Press, Boca Raton, FL.
    • (1986) DNA Systematics, Volume II, Plants , vol.2 , pp. 81-135
    • Appels, R.1    Honeycutt, R.L.2
  • 8
    • 84989634758 scopus 로고
    • Nuclear ribosomal DNA internal transcribed spacer regions (ITS1 and ITS2) define discrete biogeographic groups in Cladophora albida (Chlorophyta)
    • Bakker, F. T., Olsen, J. L., Stam, W. T. and van den Hoek, C. (1992) Nuclear ribosomal DNA internal transcribed spacer regions (ITS1 and ITS2) define discrete biogeographic groups in Cladophora albida (Chlorophyta). J. Phycol. 28, 839-845.
    • (1992) J. Phycol. , vol.28 , pp. 839-845
    • Bakker, F.T.1    Olsen, J.L.2    Stam, W.T.3    Van Den Hoek, C.4
  • 9
    • 0026822377 scopus 로고
    • Nuclear rDNA internal transcribed spacer regions define discrete biogeographic groups in Cladophora albida (Chlorophyta)
    • Baldwin, B. G. (1992) Nuclear rDNA internal transcribed spacer regions define discrete biogeographic groups in Cladophora albida (Chlorophyta). Mol. Phylogenet Evol. 1, 3-16.
    • (1992) Mol. Phylogenet Evol. , vol.1 , pp. 3-16
    • Baldwin, B.G.1
  • 10
    • 0026207421 scopus 로고
    • The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria
    • Barry, T., Colleran, G., Glennon, M., Dunican, L. K. and Gannon, F. (1991) The 16S/23S ribosomal spacer region as a target for DNA probes to identify eubacteria. PCR Methods Appl. 1, 51-56.
    • (1991) PCR Methods Appl. , vol.1 , pp. 51-56
    • Barry, T.1    Colleran, G.2    Glennon, M.3    Dunican, L.K.4    Gannon, F.5
  • 11
    • 0000367652 scopus 로고
    • The limits of amino acid sequence data in Angiosperm phylogenetic reconstruction
    • Bremer, K. (1988) The limits of amino acid sequence data in Angiosperm phylogenetic reconstruction. Evolution 42, 795-803.
    • (1988) Evolution , vol.42 , pp. 795-803
    • Bremer, K.1
  • 12
    • 0024507744 scopus 로고
    • Phylogenetic stains, ribosomal RNA-based probes for the identification of single cells
    • DeLong, E. F., Wickham, G. S. and Pace, N. R. (1989) Phylogenetic stains, ribosomal RNA-based probes for the identification of single cells. Science 243, 1360-1363.
    • (1989) Science , vol.243 , pp. 1360-1363
    • DeLong, E.F.1    Wickham, G.S.2    Pace, N.R.3
  • 13
    • 0002755760 scopus 로고
    • Nucleotide sequence of the 18S ribosomal RNA genes from the marine dinoflagellate Alexandrium tamarense (Gonyaulacales, Dinophyta)
    • Destombe, C., Cembella, A. D., Murphy, C. A. and Ragan, M. A. (1992) Nucleotide sequence of the 18S ribosomal RNA genes from the marine dinoflagellate Alexandrium tamarense (Gonyaulacales, Dinophyta). Phycologia 32, 121-124.
    • (1992) Phycologia , vol.32 , pp. 121-124
    • Destombe, C.1    Cembella, A.D.2    Murphy, C.A.3    Ragan, M.A.4
  • 14
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux, J., Haeberli, P. and Smithies, O. (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12, 387-395.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 16
    • 0004297533 scopus 로고    scopus 로고
    • computer program distributed by the authors. Botaniska Institutionen, Stockholm University, Stockholm, Sweden
    • Eriksson, T. (1996) AutoDecay, version 3.0.2. (computer program distributed by the authors). Botaniska Institutionen, Stockholm University, Stockholm, Sweden.
    • (1996) Autodecay, Version 3.0.2
    • Eriksson, T.1
  • 17
    • 0000461280 scopus 로고
    • Confidence limits on phytogenies, an approach using the bootstrap
    • Felsenstein, J. (1985) Confidence limits on phytogenies, an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 18
    • 0023084055 scopus 로고
    • Progressive sequence alignment as a prerequisite to correct phylogenetic trees
    • Feng, D. F. and Doolittle, R. F. (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J. Mol. Evol. 25, 351-360.
    • (1987) J. Mol. Evol. , vol.25 , pp. 351-360
    • Feng, D.F.1    Doolittle, R.F.2
  • 19
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris. Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
    • Gajadhar, A. A., Marquardt, W. C., Hall, R., Gunderson, J., Ariztia-Carmona, E. V. and Sogin, M. L. (1991) Ribosomal RNA sequences of Sarcocystis muris. Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol. Biochem. Parasitol. 45, 147-154.
    • (1991) Mol. Biochem. Parasitol. , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 20
    • 0001524736 scopus 로고
    • Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA
    • Gardes, M., White, T. J., Fortin, J. A., Burns, T. D. and Taylor, J. W. (1991) Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA. Can. J. Bot 69, 180-190.
    • (1991) Can. J. Bot , vol.69 , pp. 180-190
    • Gardes, M.1    White, T.J.2    Fortin, J.A.3    Burns, T.D.4    Taylor, J.W.5
  • 22
    • 0001212018 scopus 로고
    • Dinoflagellate 17S rRNA sequence inferred from the gene sequence: Evolutionary implications
    • Herzog, M. and Maroteaux, L. (1986) Dinoflagellate 17S rRNA sequence inferred from the gene sequence: Evolutionary implications. Proc. Natl. Acad. Sci. U.S.A. 83, 8644-8648.
    • (1986) Proc. Natl. Acad. Sci. U.S.A. , vol.83 , pp. 8644-8648
    • Herzog, M.1    Maroteaux, L.2
  • 23
    • 0002063701 scopus 로고
    • Discrimination between phylogenetic signal and random noise in DNA sequences
    • Miyamoto, M. M. and Cracraft, J., eds, Oxford University Press, New York
    • Hillis, D. M. (1991) Discrimination between phylogenetic signal and random noise in DNA sequences. In Phylogenetic Analysis of DNA Sequences (Miyamoto, M. M. and Cracraft, J., eds), pp. 278-294. Oxford University Press, New York.
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 278-294
    • Hillis, D.M.1
  • 24
    • 0026300584 scopus 로고
    • Ribosomal DNA, molecular evolution and phylogenetic inference
    • Hillis, D. M. and Dixon, M. T. (1991) Ribosomal DNA, molecular evolution and phylogenetic inference. Q. Rev. Biol. 66, 411-453.
    • (1991) Q. Rev. Biol. , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 25
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analysis
    • Hillis, D. M. and Huelsenbeck, J. P. (1992) Signal, noise, and reliability in molecular phylogenetic analysis. J. Hered. 83, 189-195.
    • (1992) J. Hered. , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 26
    • 0027066305 scopus 로고
    • Biogeography of Cladophoropsis membranacea (Chlorophyta) based on comparisons of nuclear rDNA ITS sequences
    • Kooistra, W. H. C. F., Stam, W. T., Olsen, J. L. and van den Hoek, C. (1992) Biogeography of Cladophoropsis membranacea (Chlorophyta) based on comparisons of nuclear rDNA ITS sequences. J. Phycol. 8, 660-668.
    • (1992) J. Phycol. , vol.8 , pp. 660-668
    • Kooistra, W.H.C.F.1    Stam, W.T.2    Olsen, J.L.3    Van Den Hoek, C.4
  • 27
    • 0027138013 scopus 로고
    • Problems relating to species sampling in phylogenetic studies, an example of non-monophyly in Cladophoropsis and Struvea (Siphonocladales, Chlorophyta)
    • Kooistra, W. H. C. F., Olsen, J. L., Stam, W. T. and van den Hoek, C. (1993) Problems relating to species sampling in phylogenetic studies, an example of non-monophyly in Cladophoropsis and Struvea (Siphonocladales, Chlorophyta). Phycologia 32, 419-428.
    • (1993) Phycologia , vol.32 , pp. 419-428
    • Kooistra, W.H.C.F.1    Olsen, J.L.2    Stam, W.T.3    Van Den Hoek, C.4
  • 28
    • 0027319339 scopus 로고
    • Application of rRNA-based probes for observing marine nanoplanktonic protists
    • Lim, E. L., Amaral, L. A., Caron, D. A. and DeLong, E. F. (1993) Application of rRNA-based probes for observing marine nanoplanktonic protists. Appl. Environ. Microbiol. 59, 1647-1655.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 1647-1655
    • Lim, E.L.1    Amaral, L.A.2    Caron, D.A.3    DeLong, E.F.4
  • 29
    • 0027306155 scopus 로고
    • Ribosomal RNA sequences for the specific detection of Toxoplasma gondii by hybridisation assay
    • MacPherson, J. M. and Gajadhar, A. A. (1993) Ribosomal RNA sequences for the specific detection of Toxoplasma gondii by hybridisation assay. Mol. Cell. Probes 7, 97-103.
    • (1993) Mol. Cell. Probes , vol.7 , pp. 97-103
    • MacPherson, J.M.1    Gajadhar, A.A.2
  • 30
    • 0022367775 scopus 로고
    • Molecular organization of dinoflagellate ribosomal DNA: Evolutionary implications of deduced 5.8S rRNA secondary structure
    • Maroteaux, L., Herzog, M. and Sayer-Gobillard, M.-O. (1985) Molecular organization of dinoflagellate ribosomal DNA: evolutionary implications of deduced 5.8S rRNA secondary structure. Biosystems 18, 307-319.
    • (1985) Biosystems , vol.18 , pp. 307-319
    • Maroteaux, L.1    Herzog, M.2    Sayer-Gobillard, M.-O.3
  • 31
    • 34250370010 scopus 로고
    • Nuclear DNA and salmonid phylogenetics
    • Phillips, R. B. and Pleyte, K. A. (1991 ) Nuclear DNA and salmonid phylogenetics. J. Fish Biol. 39, 259-275.
    • (1991) J. Fish Biol. , vol.39 , pp. 259-275
    • Phillips, R.B.1    Pleyte, K.A.2
  • 32
    • 0024231770 scopus 로고
    • Phylogenetic calibration of the 5′ terminal domain of large rRNA achieved by determining twenty eukaryotic sequences
    • Qu, L., Nicoloso, M. and Bachellerie, J. P. (1988) Phylogenetic calibration of the 5′ terminal domain of large rRNA achieved by determining twenty eukaryotic sequences. J. Mol. Evol. 28, 113-124.
    • (1988) J. Mol. Evol. , vol.28 , pp. 113-124
    • Qu, L.1    Nicoloso, M.2    Bachellerie, J.P.3
  • 35
    • 84989617472 scopus 로고
    • Amplification of the polymorphic 5.8S rRNA gene from selected Australian Gigartinalean species (Rhodophyta) by polymerase chain reaction
    • Steane, D. A., McClure, B. A., Clarke, A. E. and Kraft, G. T. (1991) Amplification of the polymorphic 5.8S rRNA gene from selected Australian Gigartinalean species (Rhodophyta) by polymerase chain reaction. J. Phycol. 27, 758-762.
    • (1991) J. Phycol. , vol.27 , pp. 758-762
    • Steane, D.A.1    McClure, B.A.2    Clarke, A.E.3    Kraft, G.T.4
  • 37
    • 0029894980 scopus 로고    scopus 로고
    • Extremely sensitive background-free gene detection using binary probes and QB replicase
    • Tyagi, S., Landegren, U., Tazi, M., Lizardi, P. M. and Kramer, F. R. (1996) Extremely sensitive background-free gene detection using binary probes and QB replicase. Proc. Natl. Acad. Sci. U.S.A. 93, 5395-5400.
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 5395-5400
    • Tyagi, S.1    Landegren, U.2    Tazi, M.3    Lizardi, P.M.4    Kramer, F.R.5
  • 38
    • 0030115504 scopus 로고    scopus 로고
    • Phylogeny of the Raphidophytes Heterosigma akashiwo and Chatonella antique using "V4" domain SSU sequences
    • Tyrrell, J. V., Bergquist, P. R., Gray, R., MacKenzie, L. and Bergquist, P. L. (1996) Phylogeny of the Raphidophytes Heterosigma akashiwo and Chatonella antique using "V4" domain SSU sequences. Biochem. Syst. Ecol. 24, 221-225.
    • (1996) Biochem. Syst. Ecol. , vol.24 , pp. 221-225
    • Tyrrell, J.V.1    Bergquist, P.R.2    Gray, R.3    Mackenzie, L.4    Bergquist, P.L.5
  • 39
    • 0342338212 scopus 로고    scopus 로고
    • Heterogeneity of SSU and LSU rDNA sequences and potential for molecular probes for the detection of Alexandrium species
    • submitted
    • Walsh, D., Reeves, R. A., Saul, D. J., Mackenzie, L., Bergquist, P. R. and Bergquist, P. L. (1997) Heterogeneity of SSU and LSU rDNA sequences and potential for molecular probes for the detection of Alexandrium species. Biochem. Syst Ecol. (submitted).
    • (1997) Biochem. Syst Ecol.
    • Walsh, D.1    Reeves, R.A.2    Saul, D.J.3    Mackenzie, L.4    Bergquist, P.R.5    Bergquist, P.L.6
  • 40
    • 0025633560 scopus 로고
    • Fingerprinting genomes using PCR with arbitrary primers
    • Welsh, J. and McClelland, M. (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18, 7213-7218.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 7213-7218
    • Welsh, J.1    McClelland, M.2
  • 41
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis, M. A., Gelfood, D. H., Sninsky, J. J. and White, T. J., eds, Academic Press, San Diego, CA
    • White, T. J., Burns, T., Lee, S. and Taylor, J. (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications, (Innis, M. A., Gelfood, D. H., Sninsky, J. J. and White, T. J., eds), pp. 315-322. Academic Press, San Diego, CA.
    • (1990) PCR Protocols: A Guide to Methods and Applications, , pp. 315-322
    • White, T.J.1    Burns, T.2    Lee, S.3    Taylor, J.4
  • 42
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. (1987) Bacterial evolution. Microbiol. Rev. 51, 221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 43
    • 0026331181 scopus 로고
    • Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides
    • Zarda, B., Amann, R., Wallner, G. and Schleifer, K.-H. (1991) Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides. J. Gen. Microbiol. 137, 2823-2830.
    • (1991) J. Gen. Microbiol. , vol.137 , pp. 2823-2830
    • Zarda, B.1    Amann, R.2    Wallner, G.3    Schleifer, K.-H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.