Portuguese population data on the six short tandem repeat loci - CSF1PO, TPOX, THO1, D3S1358, VWA and FGA

Forensic Science International

Volumn 83, Issue 3, 1996, Pages 229-235

  Santos, Sandra M M ^a   Budowle, Bruce ^b   Smerick, Jill B ^b   Keys, Kathleen M ^b   Moretti, Tamyra R ^b  

^a Laboratorio de Policia Cientifica   (Portugal)

^b Federal Bureau of Investigation   (United States)

Author keywords

Hardy Weinberg expectations; Linkage equilibrium; PCR; Population databases; Portugal; STR

Indexed keywords

ALLELE; ARTICLE; CAUCASIAN; GENE FREQUENCY; GENE LOCUS; GENETIC LINKAGE; GENETIC POLYMORPHISM; HUMAN; HUMAN TISSUE; NORMAL HUMAN; POPULATION GENETICS; PORTUGAL; PRIORITY JOURNAL; TANDEM REPEAT;

EID: 0030604245     PISSN: 03790738     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0379-0738(96)02074-9     Document Type: Article

References (32)

1. [1] A. Edwards, A. Civitello, H.A. Hammond and C.T. Caskey, DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet., 49 (1991) 746-756.
2. [2] A. Edwards, H.A. Hammond, L. Jin, C.T. Caskey and R. Chakraborty, Genetic variation at five trimeric and tetrameric repeat loci in four human population groups. Genomics, 12 (1992) 241-253.
3. [3] H.A. Hammond, L. Jin, Y. Zhong, C.T. Caskey and R. Chakraborty, Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am. J. Hum. Genet., 55 (1994) 175-189.
4. [4] R. Anker, T. Steinbreuck and H. Donnis-Keller, Tetranucleotide repeat polymorphism at the human thyroid peroxidase (hTPO) locus. Hum. Mol. Genet., 1 (1992) 137.
5. [5] M.H. Polymeropoulos, H. Xiao, D.S. Rath and C.R. Merril, Tetranucleotide repeat polymorphism at the human tyrosine hydrolase gene (TH). Nucleic Acids Res., 19 (1991) 3753.
6. [6] H. Li, L. Schmidt, M. Wei, T. Hustad, M.I. Lerman, B. Zbar and K. Tory, Three tetranucleotide polymorphisms for loci: D3S1352; D3S1358; D3S1359. Hum. Mol. Genet., 2 (1993) 1327.
7. [7] D.J. Manusco, E.A. Tuley, L.A. Westfield, N.K. Worrall, B.B. Shelton-Inloes, J.M. Sorace, Y.G. Alevy and J.E. Sadler, Structure of the gene for human von Willebrand Factor. J. Biol. Chem., 264 (1989) 19514-19527.
8. [8] C. Kimpton, A. Walton and P. Gill, A further tetranucleotide repeat polymorphism in the VWF gene. Hum. Mol. Genet., 1 (1992) 287.
9. [9] K.A. Mills, D. Even and J.C. Murray, Tetranucleotide repeat polymorphism at the human alpha fibrinogen locus (FGA). Hum. Mol. Genet., 1 (1992) 1327.
10. [10] C.T. Comey, B.W. Koons, K.W. Presley, J.B. Smerick, C.A. Sobieralski, D.M. Stanley and F.S Baechtel, DNA extraction strategies for amplified fragment length polymorphism analysis. J. Forensic Sci., 39 (1994) 1254-1269.
11. [11] J.S. Waye, L. Presley, B. Budowle, G.G. Shutle and R.M. Fourney, A simple method for quantifying human genomic DNA in forensic specimen extracts. Biotechniques, 7 (1989) 852-855.
12. [12] B. Budowle, F.S. Baechtel, C.T. Comey, A.M. Giusti and L. Klevan, Simple protocols for typing forensic biological evidence: chemiluminescent detection for human DNA quantitation and RFLP analyses and manual typing of PCR amplified polymorphisms. Electrophoresis, 16 (1995) 1559-1567.
13. [13] R. Chakraborty, P.E. Smouse and J.V. Neel, Population amalgamation and genetic variation: observations on artificially agglomerated tribal populations of Central and South America. Am. J. Hum. Genet., 43 (1988) 709-725.
14. [14] R. Chakraborty, M. Fornage, R. Guegue and E. Boerwinkle, Population genetics of hypervariable loci: analysis of PCR based VNTR polymorphism within a population. In T. Burke, G. Dolf, A.J. Jeffreys and R. Wolff (eds.), DNA Fingerprinting: Approaches and Applications, Birkhauser, Berlin, 1991, pp. 127-143.
15. [15] M. Nei and A.K. Roychoudhury. Sampling variances of heterozygosity and genetic distance. Genetics, 76 (1974) 379-390.
16. [16] S.W. Guo and E.A. Thompson, Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48 (1992) 361-372.
17. [17] S. Karlin, E.C. Cameron and P.T. Williams, Sibling and parent-offspring correlation estimation with variable family size. Proc. Natl. Acad. Sci. USA, 78 (1981) 2664-2668.
18. [18] B.S. Weir, Multiple tests. In Genetic Data Analysis, Sinauer Associates, Inc., Sunderland, Massachusetts, 1990, pp. 109-110.
19. [19] S. Alonso, A. Castro, I. Fernandez, M. Gomez de Cedron, A. Garcia-Orad, E. Meyer and M. Martinez de Pancorbo, Population study of 3 STR loci in the Basque Country (northern Spain). Int. J. Leg. Med., 107 (1995) 239-245.
20. [20] C.J. Fregeau, K.L. Bowen, J.C. Elliot, J.M. Robertson and R.M. Fourney, PCR-based DNA identification: A transition in forensic science. In Proceedings for the Fourth International Symposium on Human Identification 1993, Promega Corporation, Madison, Wisconsin, 1993, pp. 107-118.
21. [21 ] S. Furedi, J. Woller and Z. Padar, Hungarian population data for the STR systems THO1 and VWA. Int. J. Leg. Med., 108 (1995) 48-49.
22. [22] L. Gusmao, M.J. Prata and A. Amorim, The STR system hTPO: population and segregation data. Int. J. Leg. Med., 108 (1995) 167-169.
23. [23] M.N. Hochmeister, B. Budowle, J.W. Schumm, C.J. Sprecher, U.V. Borer and R. Dirnhofer, Swiss population data and forensic efficiency values on 3 tetrameric short tandem repeat loci - HUMTHO1, TPOX and CSF1PO - derived using an STR multiplex system. Int. J. Leg. Med., 107 (1995) 246-249.
24. [24] S. Holgersson, J.A. Karlsson, A. Kihlgren, B. Rosen, P. Savolainen and U. Gyllensten, Fluorescent-based typing of the two short tandem repeat loci HUMTHO1 and HUMACTBP2: reproducibility of size measurements and genetic variation in the Swedish population. Electrophoresis, 15 (1994) 890-895.
25. [25] M. Kubat, P. Wiegand and B. Brinkmann, Population genetic study from the Zagreb area using 3 STR systems. Int. J. Leg. Med., 107 (1995) 219-221.
26. [26] J.A. Lorente, M. Lorente, B. Budowle, M.R. Wilson and E. Villanueva, Analysis of the short tandem repeat (STR) HUMVWA in the Spanish population. Forensic Sci. Int., 65 (1994) 169-175.
27. [27] P. Martin, A. Alonso, B. Budowle, C. Albarran, O. Garcia and M. Sancho, Spanish population data on 7 tetrameric short tandem repeat loci. Int. J. Leg. Med., 108 (1995) 145-149.
28. n and reassignment of alleles in population analysis by using a locus-specific allelic ladder. Am. J. Hum. Genet., 53 (1993) 953-958.
29. [29] A. Sajantila, P. Pacek, M. Lukka, A.-C. Syvanen, P. Noikelainen, P. Sistonen, L. Peltonen and B. Budowle, A microsatellite polymorphism in von Willebrand Factor gene: comparison of allele frequencies in different population samples and evaluation for forensic medicine. Forensic Sci. Int., 68 (1994) 91-102.
30. [30] M. Sjerps, N. van der Geest, C. Pieron, M. Gajadhar and A. Kloosterman, A Dutch study of the STR loci HUMTHO1, HUMFES/FPS, HUMVWA31/1, and HUMF13A1, conducted for forensic purposes. Int. J. Leg. Med., 108 (1995) 127-134.
31. [31] A. Urquhart, N.J. Oldroyd, C.P. Kimpton and P. Gill, Highly discriminating heptaplex short tandem repeat PCR system for forensic identification. BioTechniques, 18 (1995) 116-121.
32. [32] National Research Council Report, The Evaluation of Forensic DNA Evidence, National Academy Press, Washington, DC, 1996, pp. 4-19-4-20.