Phylogenetics of worldwide human populations as determined by polymorphic Alu insertions

Electrophoresis

Volumn 23, Issue 19, 2002, Pages 3346-3356

  Antunez de Mayolo, Gabriela ^a   Antunez de Mayolo, Adriana ^a   Antunez de Mayolo, Pamela ^a   Papiha, Surinder S ^b   Hammer, Michael ^c   Yunis, Juan J ^d   Yunis, Emilio J ^e   Damodaran, Chendi ^f   Martinez De Pancorbo, Marian ^g   Caeiro, Jose Luis ^h   Puzyrev, Valery P ⁱ   Herrera, Rene J ^a  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

^c UNIVERSITY OF ARIZONA   (United States)

^d UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^e Turbay y Cia ^*  (Colombia)

^f Kamalajar Salid   (India)

^g UNIVERSITY OF THE BASQUE COUNTRY UPV EHU   (Spain)

^h UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

ⁱ RESEARCH INSTITUTE OF MEDICAL GENETICS   (Russian Federation)

Author keywords

Alu family of repetitive elements; Recent human evolution; Short interspersed elements

Indexed keywords

DNA SEQUENCES; GENES; MAMMALS; MAXIMUM LIKELIHOOD ESTIMATION; PHYLOGENETIC; POLYAMIDEIMIDES; PRINCIPAL COMPONENT ANALYSIS;

ALU FAMILY OF REPETITIVE ELEMENT; DNA MARKERS; GENETIC MARKERS; HAPLOID GENOME; HUMAN EVOLUTION; HUMAN POPULATION; INTERSPERSED ELEMENTS; PHYLOGENETICS; RECENT HUMAN EVOLUTION; SHORT INTERSPERSED ELEMENT;

POLYMERASE CHAIN REACTION;

DNA MARKER;

AFRICA; AGAR GEL ELECTROPHORESIS; ALLELE; ARTICLE; CONTROLLED STUDY; DATA ANALYSIS; DNA PURIFICATION; ETHNIC DIFFERENCE; EVOLUTION; GENE FLOW; GENE INSERTION; GENE LOCUS; GENETIC HETEROGENEITY; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOIDY; HUMAN; HYPOTHESIS; INTERSPERSED REPEAT; MAXIMUM LIKELIHOOD METHOD; MOLECULAR PHYLOGENY; MONOPHYLY; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRINCIPAL COMPONENT ANALYSIS; ALU SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; RACE;

ALU ELEMENTS; CONTINENTAL POPULATION GROUPS; EVOLUTION, MOLECULAR; HUMANS; MUTAGENESIS, INSERTIONAL; PHYLOGENY; POLYMORPHISM, GENETIC; VARIATION (GENETICS);

EID: 0036709085     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/1522-2683(200210)23:19<3346::AID-ELPS3346>3.0.CO;2-J     Document Type: Article

References (44)

1. Ullu, E., Murphy, S., Melli, M., Cell 1982, 29, 195-202.
2. Rogers, J., Nature 1983, 301, 460.
3. Szmulewicz, M. N., Novick, G. E., Herrera, R. J., Electrophoresis 1998, 19, 1260-1264.
4. Rowald, D. J., Herrera, R. J., Genetica 2000, 108, 57-72.
5. Batzer, M. A., Kilroy, G. E., Richard, P. E., Shaikh, T. H., Desselle, T. D., Hoppens, C. L., Deininger, P. L., Nucleic Acids Res. 1990, 18, 6793-6798.
6. Leeflang, E. P., Liu, W. M., Hashimoto, C., Choudary, P. V., Schmid, C. W., J. Mol. Evol. 1992, 35, 7-16.
7. Leeflang, E. P., Liu, W. M., Chesnokov, I. N., Schmid, C. W., J. Mol. Evol. 1993, 37, 559-565.
8. Szmulewicz, M. N., Andino, L. M., Reategui, E. P., Woolley-Barker, T., Jolly, C. J., Disotell, T. R., Herrera, R. J., Am. J. Phys. Anthropol. 1999, 109, 1-8.
9. de Pancorbo, M. M., Lopez-Martinez, M., Martinez-Bouzas, C., Castro, A., Fernandez-Fernandez, I., Antunez-de-Mayolo, G., Antunez-de-Mayolo, A., Antunez-de-Mayolo, P., Rowald, D. J., Herrera, R. J., Hum. Genet. 2001, 109, 224-233.
10. Batzer, M. A., Stoneking, M., Alegria-Hartman, M., Bazan, H., Kass, D. H., Shaikh, T. H., Novick, G. E., Ioannou, P. A., Scheer, W. D., Herrera, R. J., Deininger, P. L., Proc. Nat. Acad. Sci. USA 1994, 91, 12288-12292.
11. Wolpoff, M. H., Meller, P., Stringer, C. B., Behavioral and Biological Perspectives on the Origins of Modern Humans, University Press, Edinburgh 1989, pp. 62-108.
12. Cavalli-Sforza, L. L., Menozzi, P., Piazza, A., The History and Geography of Human Genes, Princeton University Press, New Jersey 1994.
13. Labuda, D., Zietklewicz, E., Yotova, V., Genetics 2000, 156, 799-808.
14. Cann, R. L., Stoneking, M., Wilson, A. C., Nature (London) 1987, 325, 31-36.
15. Merriweather, D. A., Clark, A. G., Ballinger, S. W., Schurr, T. G., Soodyall, H., Jenkins, T., Sherry, S. T., Wallace, D. W., J. Mol. Evol. 1991, 33, 543-565.
16. Vigilant, L., Stoneking, M., Harpending, H., Hawkes, K., Wilson, A. C., Science 1991, 253, 1503-1507.
17. Stoneking, M., Evol. Anth. 1993, 2, 60-73.
18. Jorde, L. B., Watkins, W. S., Bamshad, M. J., Dixon, M. E., Rinker, C. E., Seielstad, M. T., Batzer, M. A., Am. J. Hum. Genet. 2000, 66, 979-988.
19. Underhill, P. A., Shen, P., Lin, A. A., Jin, L., Passarino, G., Yang, W. H., Kaufman, E., Bonne-Tamir, B., Bertranpetit, J., Francalacci, P., Ibrahim, M., Jenkins, T., Kidd, J. R., Mehdi, S. Q., Seielstad, M. T., Wells, R. S., Piazza, A., Davis, R. W., Feldman, M. W., Cavalli-Sforza, L., Oefner, P. J., Nat. Genet. 2000, 26, 358-361.
20. Ke, Y., Su, B., Song, X., Lu, D., Chen, L., Li, H., Qi, C., Marzuki, S., Deka, R., Underhill, P., Xiao, C., Shriver, M., Lell, J., Wallace, D., Wells, R. S., Selelstad, M., Oefner, P., Zhu, D., Jin, J., Huang, W., Chakraborty, R., Chen, Z., Jin, L., Science 2001, 292, 1151-1153.
21. Wainscoat, J. S., Hill, A. V. S., Boyce, A. L., Flint, J., Hernandez, M., Thein, S. L., Old, J. M., Lynch, J. R., Falusi, A. G., Weatheral, D. J., Clegg, J. B., Nature (London) 1986, 319, 491-493.
22. Bowcock, A. M., Kid, J. R., Mountain, J. L., Herbert, J. M., Carotenuto, L., Kidd, K. K., Cavalli-Sforza, L. L., Proc. Natl. Acad. Sci. USA 1991, 88, 839-843.
23. Watkins, W. S., Ricker, C. E., Bamshad, M. J., Carroll, M. L., Nguyen, S. V., Batzer, M. A., Jorde, L. B., Am. J. Hum. Genet. 2001, 68, 738-752.
24. Bowcock, A. M., Ruiz-Linares, A., Tomfohrde, J., Minch, E., Kidd, J. R., Cavalli-Sforza, L. L., Nature (London) 1994, 368, 455-457.
25. Zhirotovsky, L. A., Bennet, L., Bowcock, A. M., Feldman, M. W., Mol. Biol. Evol. 2000, 17, 757-767.
26. Batzer, M. A., Arcot, S. S., Phinney, J. W., Alegria-Hartman, M., Kass, D. H., Milligan, S. M., Kimpton, C., Gill, P., Hochmeister, M., Iannou, P. A., Herrera, R. J., Boudreau, D. A., Scheer, W. D., Keats, B. J., Deininger, P., Stoneking, M., J. Mol. Evol. 1996, 42, 22-29.
27. Novick, G. E., Novick, C. C., Yunis, E., Martinez, G. G., Duncan, G. M., Troup, P. L., Deninger, M., Stoneking, M., Batzer, M. A., Herrera, R. J., Electrophoresis 1995, 16, 1596-1601.
28. Novick, G. E., Batzer, M. A., Deininger, P. L., Herrera, R. J., Bioscience 1996, 46, 32-41.
29. Novick, G. E., Novick, C. C., Yunis, J., Yunis, E., Antunez-de-Mayolo, P., Scheer, W. D., Deininger, R. J., Stoneking, M., York, D. S., Batzer, M. A., Herrera, R. J., Hum. Biol. 1998, 70, 23-39.
30. Batzer, M. A., Deninger, P. L., Genomics 1991, 9, 481-487.
31. Yang-Feng, T. L., Opdenakker, G., Volckaert, G., Franke, U., Am. J. Hum. Genet. 1986, 39, 79-87.
32. Karathanasis, S. K., Proc. Natl. Acad. Sci. USA 1985, 82, 6374-6378.
33. Tiret, L., Rigat, B., Visvikis, S., Breda, C., Corvol, P., Cambien, F., Soubier, F., Am. J. Hum. Genet. 1992, 51, 197-205.
34. Kass, D. H., Aleman, C., Batzer, M. A., Genetica 1994, 94, 1-8.
35. Li, C. C., First Course in Population Genetics, Boxwood Press, Pacific Groove, CA 1976.
36. Felsentein, J., PHYLIP (Phylogeny Inference Package), Version 3.5, Department of Genetics, University of Washington, Seattle 1993.
37. Nei, M., Am. Naturalist 1972, 106, 283-292.
38. Harpending, H. C., Ward, R. H., in: Nitecki, M. (Ed.), Chemical Systematics and Human Populations. In Biochemical Aspect of Evolutionary Biology, University Press, Chicago, IL 1982, pp. 213-252.
39. Cavalli-Sforza, L. L., Minch, E., Mountain, J., Proc. Natl. Acad. Sci. USA 1992, 89, 5620-5624.
40. Pääbo, S., Trends Cell. Biol. 1999, 9, M13-M16.
41. Takahata, N., Lee, S. H., Satta Y., Mol. Biol. Evol. 2001, 18, 172-183.
42. Chikhi, L., Destro-Bisol, G., Bertorelle, G., Pascali, V., Barbujani, G., Proc. Natl. Acad. Sci. USA 1998, 95, 9053-9058.
43. Hammer, M. F., Spurole, A. B., Karafet, T., Bonner, M. R., Wood, E. T., Novelletto, A., Malaspina, P., Mitchell, R. J., Horai, S., Jenkins, T., Zegura, S. L., Genetics 1997, 145, 787-805.
44. Stoneking, M., Cann, R. L., in: Mellars, P., Stringer, C. (Eds.), Aftican Origin of Human Mitochondrial DNA. The Human Revolution: Behavioral and Biological Perspectives on the Origin of Modern Humans. Princeton University Press, Princeton, NJ 1989, pp. 17-30.