Identification of genetically linked RGAs by BAC screening in maize and implications for gene cloning, mapping and MAS

Theoretical and Applied Genetics

Volumn 106, Issue 7, 2003, Pages 1171-1177

  Quint, M ^a   Dussle C M ^a   Melchinger, A E ^a   Lubberstedt T ^a,b  

^a UNIVERSITY OF HOHENHEIM   (Germany)

^b DANISH INSTITUTE OF AGRICULTURAL SCIENCES   (Denmark)

Author keywords

BAC; Ghost marker; Maize; pic19; RGA; SCMV

Indexed keywords

GENES; MOLECULAR BIOLOGY; PLANTS (BOTANY);

GENETIC MAPS;

CLONING;

BACTERIA (MICROORGANISMS); EMBRYOPHYTA; SACCHARUM HYBRID CULTIVAR; SUGARCANE MOSAIC VIRUS; ZEA MAYS;

EID: 0038724168     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-002-1105-z     Document Type: Article

References (33)

1. Bennetzen JL, Qin MM, Ingels S, Ellingboe AH (1988) Allele-specific and mutator-associated instability at the Rp1 disease-resistance locus of maize. Nature 332:369-370
2. Collins NC, Webb CA, Seah S, Ellis JG, Hulbert SH, Pryor A (1998) The isolation and mapping of disease resistance gene analogues in maize. Mol Plant Microbe Interact 11:968-78
3. Collins NC, Drake J, Aycliffe M, Sun Q, Ellis J (1999) Molecular characterisation of the maize Rp1-D rust resistance haplotype and its mutants. Plant Cell 11:1365-1376
4. Davis G, Musket T, Melia-Hancock S, Duru N, Qu J, Sharopova N, Schultz L, McMullen MD, Woodman WL, Long MJ, Lee M, Vogel JM (2000) A high-resolution genetic map of the B73 x Mo17 population. Maize Genetics Conference Abstracts 42:P79
5. Ellis J, Lawrence GJ, Finnegan EJ, Anderson PA (1995) Contrasting complexity of two rust resistance loci in flax. Proc Natl Acad Sci USA 92:4185-4188
6. Frisch M, Quint M, Lübberstedt T, Melchinger AE (2003) Duplicate marker loci can result in incorrect locus order on linkage maps. (submitted)
7. Gaut BS, Doebley JF (1997) DNA sequence evidence for the segmental allotetraploid origin of maize. Proc Natl Acad Sci USA 94:6809-6814
8. Hammond-Kosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48:575-607
9. Helentjaris T (1995) Atlas of duplicated sequences. Maize Genet Coop Newslett 69:67
10. Hu G, Hulbert S (1994) Evidence for the involvement of gene conversion in meiotic instability of the Rp1 rust resistance genes in maize. Genome 37:742-746
11. Kesseli R, Witsenboer H, Stanghellini M, Vandermark G, Michelmore RW (1993) Recessive resistance to Plasmopara lactucae-radicis maps by bulked segregant analysis to a cluster of dominant resistance genes in lettuce. Mol Plant-Microbe Interact 6:722-728
12. Liu SS, Kowalsky SP, Lan TH, Feldmann KA, Peterson AH (1996) Genome-wide high-resolution mapping by recurrent intermating using Arabidopsis thaliana as a model. Genetics 142:247-258
13. Lander ES, Green P, Abraramson J, Baslow A, Daly MJ, Lincoln SE, Newburg L (1987) MapMaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-184
14. Landry BS, Kesseli R, Farrara B, Michelmore RW (1987) A genetic map of lettuce (Lactuca sativa L.) with restriction fragment length polymorphism, isozyme, disease resistance and morphological markers. Genetics 116:331-337
15. Leipoldt M, Schmidtke J (1982) In: Dover G, Flavell R (eds) Genome evolution. Academic Press, New York, pp 219-236
16. Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, Spivey R, Wu T, Earle ED, Tanksley SD (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262:1432-6
17. Martinez O, Curnow RN (1992) Estimating the locations and the sizes of the effects of quantitative trait loci using flanking markers. Theor Appl Genet 85:480-488
18. Meyers BC, Chin, DB, Shen KA, Sivaramakrishnan S, Lavelle DO, Zhang Z, Michelmore RW (1998a) The major resistance gene cluster in lettuce is highly duplicated and spans several megabases. Plant Cell 10:1817-1832
19. Meyers BC, Shen KA, Rohani P, Gaut BS, Michelmore RW (1998b) Receptor-like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 11:1833-1846
20. Meyers BC, Dickerman AW, Michelmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J 20:317-332
21. Michelmore RW, Meyers BC (1998) Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res 8:1113-1130
22. Parniske M, Hammond-Kosack KE, Golstein C, Thomas CM, Jones DA, Harrison K, Wulff BB, Jones JD (1997) Novel disease resistance specifities results from sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91:821-832
23. Pryor T (1987) Stability of alleles of Rp (resistance to Puccinia sorghi). Maize Genet Newslett 61:37-38
24. Quint M, Melchinger AE, Dußle CM, Lübberstedt T (2000) Breeding for virus resistance in maize. Genetika 32:529-545
25. Quint M, Mihaljevic R, Dußle CM, Xu ML, Melchinger AE, Lübberstedt T (2002) Development of RGA-CAPS markers and genetic mapping of candidate genes for SCMV resistance in maize. Theor Appl Genet 105:355-363
26. Saxena KMS, Hooker AL (1968) On the structure of a gene for disease resistance in maize. Proc Natl Acad Sci USA 61:1300-1305
27. Shen KA, Meyers BC, Islani-Faridi MN, Chin DB, Stelly DM, Michelmore RW (1998) Resistance gene candidates indetified by PCR with degenerate oligonnucleotide primos map to clusters of resistance genes in lettuce. Mol Plant-Microbe Interact 8:815-823
28. Sudupak MA, Bennetzen JL, Hulbert SH (1993) Unequal exchange and meiotic instability of disease-resistance genes in the Rp1 region on maize. Genetics 133:119-125
29. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
30. Thomas CM, Jones DA, Parniske M, Harrison K, Balint-Kurti PJ, Hatzixanthis K, Jones JDG (1997) Characterisation of the tomato Cf-4 gene for resistance to Cladiosporum fulvum identifies sequences that determine recognitial specifity in Cf-4 and Cf-9. Plant Cell 9:2209-2224
31. Witsenboer H, Kesseli R, Fortin MG, Stanghellini M, Michelmore RW (1995) Sources and genetic fine structure of a cluster of genes for resistance to three pathogens of lettuce Theor Appl Genet 91:178-188
32. Xia XC, Melchinger AE, Kuntze L, Lübberstedt T (1999) Quantitative trait loci mapping of resistance to sugarcane mosaic virus in maize. Phytopathology 89:660-667
33. Zhao B, Lin X, Leach JE, Hulbert S (2001) Molecular analysis of the maize gene conferring a non-host hypersensitive reaction to rice bacterial streak. Plant and Animal Genome IX Conference, p 90