Direct detection of Fe(IV)=O intermediates in the cytochrome aa3 oxidase from Paracoccus denitrificans[H2O2 reaction

Journal of Biological Chemistry

Volumn 278, Issue 21, 2003, Pages 18761-18766

  Pinakoulaki, Eftychia ^a   Pfitzner, Ute ^b   Ludwig, Bernd ^b   Varotsis, Constantinos ^a  

^a UNIVERSITY OF CRETE   (Greece)

^b GOETHE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DENITRIFICATION; IRON; OXYGEN; RAMAN SCATTERING; REDUCTION;

PARACOCCUS DENITRIFICANS;

BIOCHEMISTRY;

CATION; COORDINATION COMPOUND; COPPER; CYTOCHROME C OXIDASE; HEME; HISTIDINE; HYDROGEN PEROXIDE; IRON; OXOFERRYL DERIVATIVE; OXYGEN; PEROXIDE; PORPHYRIN; RADICAL; TYROSINE; UNCLASSIFIED DRUG; FERRYL IRON;

ACCELERATION; ALKALINITY; ARTICLE; BINDING SITE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; NONHUMAN; OXIDATION REDUCTION REACTION; PARACOCCUS DENITRIFICANS; PKA; PRIORITY JOURNAL; RAMAN SPECTROMETRY; STEADY STATE; CHEMISTRY; ENZYMOLOGY; METABOLISM; PH; SPECTROPHOTOMETRY;

NEGIBACTERIA; PARACOCCUS DENITRIFICANS;

ELECTRON TRANSPORT COMPLEX IV; HYDROGEN PEROXIDE; HYDROGEN-ION CONCENTRATION; IRON; OXIDATION-REDUCTION; OXYGEN; OXYGEN ISOTOPES; PARACOCCUS DENITRIFICANS; SPECTROPHOTOMETRY; SPECTRUM ANALYSIS, RAMAN;

EID: 0038482073     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M211925200     Document Type: Article

References (70)

1. Wikström, M. (1989) Nature 338, 776-778
2. Babcock, G. T., and Wikström, M. (1992) Nature, 356, 301-309
3. Michel, H. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 12819-12824
4. Michel, H., Behr, J., Harrenga, A., and Kannt, A. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 329-356
5. Ferguson-Miller, S., and Babcock, G. T. (1996) Chem. Rev. 96, 2889-2907
6. Gennis, R. B. (1998) Biochim. Biophys. Acta 1365, 241-248
7. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1995) Science 269, 1069-1074
8. Soulimane, T., Buse, G., Bourenkov, G. P., Bartunik, H. D., Huber, R., and Than, M. E. (2000) EMBO J. 19, 1766-1776
9. Yoshikawa, S., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., Yamashita, E., Inoue, N., Yao, M., Fei, M. J., Libeu, C. P., Mizushima, T., Yamaguchi, H., Tomizaki, T., and Tsukihara, T. (1998) Science 280, 1723-1729
10. Iwata, S., Ostermeier, C., Ludwig, B., and Michel, H. (1995) Nature 376, 660-669
11. Ostermeier, C., Harrenga, A., Ermler, U., and Michel, H. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 10547-10553
12. Fabian, M., Wong, W. W., Gennis, R. B., and Palmer, G. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 13114-13117
13. Proshlyakov, D. A., Pressler, M. A., and Babcock, G. T. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 8020-8025
14. Michel, H. (1999) Biochemistry, 38, 15129-15140
15. Kannt, A., Lancaster, C. R. D., and Michel, H. (1998) Biophys. J. 74, 708-721
16. Proshlyakov, D. A., Pressler, M. A., Demaso, C., Leykam, J. F., DeWitt, D. L., and Babcock, G. T. (2000) Science 290, 1588-1591
17. Wrigglesworth, J. M. (1984) Biochem. J. 217, 715-719
18. Vygodian, T. V., and Konstantinov, A. A. (1988) Ann. N. Y. Acad. Sci. 550, 124-138
19. Konstantinov, A. A., Capitanio, N., Vygodina, T. V., and Papa, S. (1992) FEBS Lett. 312, 71-74
20. Weng, L. C., and Baker, G. M. (1991) Biochemistry 30, 5727-5733
21. Proshlyakov, D. A., Ogura, T., Shinzawa-Itoh, K., Yoshikawa, S., Appelman, E. H., and Kitagawa, T. (1994) J. Biol. Chem. 47, 29385-29388
22. Proshlyakov, D. A., Ogura, T., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (1996) Biochemistry 35, 76-82
23. Proshlyakov, D. A., Ogura, T., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (1996) Biochemistry 35, 8580-8586
24. Fabian, M., and Palmer, G. (1995) Biochemistry 34, 13802-13810
25. Fabian, M., and Palmer, G. (1999) Biochemistry 38, 6270-6275
26. Fabian, M., and Palmer, G. (2001) Biochemistry 40, 1867-1874
27. MacMillan, F., Kannt, A., Behr, J., Prisner, T., and Michel, H. (1999) Biochemistry 38, 9179-91884
28. Rigby, S. E. J., Jünemann, S., Rich, P. R., and Heathcote, P. (2000) Biochemistry 39, 5921-5928
29. Verkhovsky, M. I., Morgan, J. E., and Wikström, M. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 12235-12239
30. Varotsis, C., and Babcock, G. T. (1990) Biochemistry 32, 7357-7362
31. Ogura, T., Takahashi, S., Hirota, S., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (1990) J. Biol. Chem. 265, 14721-14723
32. Han, S., Ching, Y.-C., and Rousseau, D. L. (1990) Nature 348, 89-90
33. Ogura, T., Takahashi, S., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (1990) J. Am. Chem. Soc. 112, 5630-5631
34. Varotsis, C., Zhang, Y., Appelman, E. H., and Babcock, G. T. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 237-241
35. Ogura, T., Takahashi, S., Hirota, S., Shinzawa-Itoh, K., Yoshikawa, S., Appleman, E. H., and Kitagawa, T. (1993) J. Am. Chem. Soc. 115, 8527-8536
36. Ogura, T., Takahashi, S., Hirota, S., Shinzawa-Itoh, K., Yoshikawa, S., Appleman, E. H., and Kitagawa, T. (1994) J. Biol. Chem. 269, 29385-29388
37. Varotsis, C., Lauraeus, M., Babcock, G. T., and Wikström, M. (1995) Biochim. Biophys. Acta 1231, 111-116
38. Ogura, T., Hirota, S., Proshlyakov, D. A., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (1996) J. Am. Chem. Soc. 118, 5443-5449
39. Han, S., Takahashi, S., and Rousseau, D. L. (1999) J. Biol. Chem. 275, 1910-1919
40. Kim, Y., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (2001) J. Am. Chem. Soc. 123, 757-758
41. Pinakoulaki, E., Pfitzner, U., Ludwig, B., and Varotsis, C. (2002) J. Biol. Chem. 277, 13563-13568
42. Hendler, R. W., Pardhasaradhi, K., Reynafarje, B., and Ludwig, B. (1991) Biophys. J. 60, 415-423
43. Pfitzner, U., Odenwald, A., Ostermann, T., Weingard, L., Ludwig, B., and Richter, O.-M. H. (1998) J. Bioenerg. Biomembr. 30, 89-97
44. Varotsis, C., Oertling, W., and Babcock, G. T. (1990) Appl. Spectrosc. 44, 742-746
45. Varotsis, C., Woodruff, W. H., and Babcock, G. T. (1989) J. Am. Chem. Soc. 111, 6439-6440
46. Varotsis, C., Woodruff, W. H., and Babcock, G. T. (1990) J. Biol. Chem. 265, 11131-11136
47. Varotsis, C., and Babcock, G. T. (1995) J. Am. Chem. Soc 117, 11260-11269
48. Varotsis, C., and Babcock, G. T. (1993) in Methods in Enzymology, Metalobiochemistry, Part C, (Riordan J. F., and Vallee, B. L., eds) pp. 409-431, Academic Press, Orlando, FL
49. Vygodina, T. V., Pecoraro, C., Mitchell, D., Gennis, R., and Konstantinov, A. A. (1998) Biochemistry 37, 3053-3061
50. Pecoraro, C., Gennis, R. B., Vygodina, T. V., and Konstantinov, A. A. (2001) Biochemistry 40, 9695-9708
51. Morgan, J. E., Verkhovsky, M. I., Palmer, G., and Wikström, M. (2001) Biochemistry 40, 6882-6892
52. Einarsdóttir, O., Szundi, I., van Eps, N., and Sucheta, A. J. (2002) J. Inorg. Biochem. 91, 87-93
53. Han, S., Ching, Y.-C., and Rousseau, D. L. (1990) J. Am. Chem. Soc. 112, 9445-9451
54. Oertling, W. A., Hoogland, H., Babcock, G. T., and Weaver, R. (1988) Biochemistry 27, 5395-5400
55. Varotsis, C., and Vamvouka, M. (1998) J. Phys. Chem. B 102, 7670-7673
56. Hayashi, Y., and Yamazaki, I. (1978) Arch. Biochem. Biophys. 190, 446-453
57. Palmer, G. (1998) EBEC Short Rep. 10, 85
58. Bassan, A., Blomberg, M. R. A., Siegbahn, P. E. M., and Que, L., Jr. (2002) J. Am. Chem. Soc. 124, 11056-11063
59. Kitagawa, T. (2000) J. Inorg. Biochem. 82, 9-18
60. Uchida, T., Mogi, T., Kitagawa, T. (2000) Biochemistry 39, 6669-6678
61. Wu, W., Varotsis, C., Babcock, G. T., Chang, C. K., Puustinen, A., and Wikström, M. (1992) J. Am. Chem. Soc. 114, 1182-1188
62. McDonald, M. R., Fredricks, F. C., and Margerum, D. W. (1997) Inorg. Chem. 36, 3119-3124
63. McDonald, M. R., Scheper, W. H., Lee, H. D., and Margerum, D. W. (1995) Inorg. Chem. 34, 229-237
64. Poulos, T. L. (1987) Adv. Inorg. Biochem. 7, 1
65. Dawson, J. H. (1988) Science 240, 433-439
66. Sundaramoorthy, M., Terner, J., and Poulos, T. L. (1995) Structure 3, 1367-1377
67. Hashimoto, S., Tatsuno, Y., and Kitagawa, T. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 2417-2421
68. Oertling, W. A., Kean, R. T., Wever, R., and Babcock, G. T. (1990) Inorg. Chem. 29, 2633-2645
69. Koutsoupakis, K., Stavrakis, S., Pinakoulak, E., Soulimane, T., Varotsis, C. (2002) J. Biol. Chem. 277, 32860-32866
70. Varotsis, C., Woodruff, W. H., and Babcock, G. T. (1989) J. Am. Chem. Soc. 112, 1297