Genomic characterisation of taro bacilliform virus

Archives of Virology

Volumn 148, Issue 5, 2003, Pages 937-949

  Yang, I C ^a   Hafner, G J ^a,b   Dale, J L ^a   Harding, R M ^a  

^a QUEENSLAND UNIVERSITY OF TECHNOLOGY   (Australia)

^b PANBIO Ltd   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ANIMALS; BADNAVIRUS; BASE SEQUENCE; COLOCASIA; CONSERVED SEQUENCE; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; PLANT DISEASES;

BADNAVIRUS; CACAO SWOLLEN SHOOT VIRUS; CAULIMOVIRIDAE; CITRUS; CITRUS YELLOW MOSAIC VIRUS; COLOCASIA ESCULENTA; DIOSCOREA; PSEUDOCOCCIDAE; TARO BACILLIFORM VIRUS; THEOBROMA CACAO;

EID: 0038394497     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-002-0969-1     Document Type: Article

References (34)

1. Boeke JD, Corces VG (1989) Transcription and reverse transcription of retrotransposons. Ann Rev Micro 43: 403-434
2. Bouhida M, Lockhart BEL, Olszewski NE (1993) An analysis of the complete sequence of a sugarcane bacilliform virus genome infectious to banana and rice. J Gen Virol 74: 1-8
3. Braithwaite KS, Egeskov NM, Smith GR (1995) Detection of sugarcane bacilliform virus using the polymerase chain reaction. Plant Dis 79: 792-796
4. Briddon RW, Phillips S, Brunt A, Hull R (1999) Analysis of the sequence of Dioscorea alata bacilliform virus; comparison to other members of the badnavirus group. Virus Genes 18: 277-283
5. Brunt AA, Crabtree K, Gibbs AJ (1990) Viruses of tropical plants. CABI, Wallingford UK, pp 242-243
6. Cheng CP, Lockhart BEL, Olszewski NE (1996) The ORF I and II proteins of Commelina yellow mottle virus are virion-associated. Virology 223: 263-271
7. Connell J (1975) The death of taro: local response to a change of subsistence crop in the northern Solomon Islands. Mankind 11: 445-452
8. Geering ADW, McMichael LA, Dietzgen RG, Thomas JE (2000) Genetic diversity among banana streak virus isolates from Australia. Phytopathology 90: 921-927
9. Gollifer DE, Brown JF (1972) Virus diseases of Colocasia esculenta in the British Solomon Islands. Plant Dis Rep 56: 597-599
10. Gollifer DE, Jackson GVH, Dabek AJ, Plumb RT, May YY (1977) The occurrence and transmission of viruses of edible aroids in the Solomon Islands. Pest Articles News Summ 23: 171-177
11. Hagen LS, Jacquemond M, Lepingle A, Lot H, Tepfer M (1993) Nucleotide sequence and genomic organisation of cacao swollen shoot virus. Virology 196: 619-628
12. Harper G, Hull R (1998) Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17: 271-278
13. Hohn T, Futterer J (1997) The proteins and functions of plant pararetroviruses: knowns and unknowns. Crit Rev Plant Sci 16: 133-161
14. Huang Q, Hartung JS (2001) Cloning and sequence analysis of an infectious clone of Citrus yellow mosaic virus that can infect sweet orange via Agrobacterium-mediated inoculation. J Gen Virol 82: 2549-2558
15. Hull R, Lockhart BEL, Reddy DVR, Schoelz JE (2000) Family Caulimoviridae. In: Van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds). Virus taxonomy. Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press, pp 335-347
16. Jackson GVH, Gollifer DE (1975) Disease and pest problems of taro (Colocasia esculenta (L.) Schott). Pest Articles News Summ 21: 45-53
17. Jackson GVH (1978) Alomae and bobone diseases of taro. South Pacific Commission Advisory Leaflet 8
18. Jacquot E, Hagen LS, Jacquemond M, Yot P (1996) The open reading frame 2 product of cocao swollen shoot badnavirus is a nucleic acid-binding protein. Virology 225: 191-195
19. James M, Kenten RH, Woods RD (1973) Virus-like particles associated with two diseases of Colocasia esculenta (L.) Schott in the British Solomon Islands. J Gen Virol 21: 145-153
20. Kenten RH, Woods RD (1973) Viruses of Colocasia and Xanthosoma. Pest Articles News Summ 19: 38-41
21. Lockhart BEL, Autrey LJC (1988) Occurrence in sugarcane of a bacilliform virus related serologically to banana streak virus. Plant Dis 72: 230-233
22. Lockhart BEL, Olszewski NE (1993) Serological and genomic heterogenicity of banana streak badnavirus: implications for virus detection in Musa germplasm. In: Ganry J (ed) Proc International Symposium on Genetic Improvement of Bananas for Resistance to Diseases and Pests, Breeding banana and plantain for resistance to diseases and pests, Montpellier, pp 105-113
23. Medberry SL, Lockhart BEL, Olszewski NE (1990) Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. Nucleic Acids Res 18: 5505-5513
24. Page RDM (1996) Treeview: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12: 357-358
25. Pappu SS, Brand R, Pappu HR, Rybicki EP, Gough KH, Frenkel MJ, Niblett CL (1993) A polymerase chain reaction method adapted for selective amplification and cloning of 3′ sequences of potyviral genomes: applications to dasheen mosaic virus. J Virol Methods 41: 9-20
26. Pappu SS, Pappu HR, Lastra R, Niblett CL (1994) Variability in the length of the amino terminal sequence contributes to the capsid protein diversity among dasheen mosaic potyvirus isolates. Arch Virol 136: 407-413
27. Pappu SS, Pappu HR, Rybicki EP, Niblett CL (1994) Unusual amino-terminal repeat characterizes the capsid protein of dasheen mosaic potyvirus. J Gen Virol 75: 239-242
28. Pfeiffer P, Hohn T (1983) Involvement of reverse transcription in the replication of cauliflower mosaic virus: a detailed model and test of some aspects. Cell 33: 781-789
29. Plucknett DL, de la Pena RS, Obrero F (1970) Taro (Colocasia esculenta). Field Crops Abstracts 23: 413-426
30. Rodoni BC, Dale JL, Harding RM (1994) Review of alomae disease of taro. Papua New Guinea J Agricult, Forestry Fish 37: 14-18
31. Rombauts S, Déhais P, Montagu MV, Rouzé (1999) PlantCARE, a plant cis-acting regulatory element database. Nucleic Acids Res 27: 295-296
32. Smith GR, Handley JA, Harding RM, Dale JL, Gambley CF, Braithwaite KS (1996) Variability in sugarcane bacilliform and mosaic viruses and consequences for diagnosis. In: Cock JH, Brekelbaum T (eds) Proc XXIII International Society of Sugarcane Technologists, Columbia, pp 390-396
33. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882
34. Wingender E, Chen X, Hehl R, Karas H, Liebich I, Matys V, Meinhardt T, Prüß M, Reuter I, Schacherer F (2000) TRANSFAC: an integrated system for gene expression regulation. Nucleic Acid Res 28: 316-319