Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy

Journal of the American Chemical Society

Volumn 125, Issue 27, 2003, Pages 8178-8185

  Eker, Fatma ^a   Griebenow, Kai ^a   Schweitzer Stenner, Reinhard ^a  

^a UNIVERSITY OF PUERTO RICO   (Puerto Rico)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; HYDROGEN BONDS; MOLECULAR STRUCTURE; ULTRAVIOLET SPECTROSCOPY; WATER;

TRIPEPTIDES;

PROTEINS;

ALANINE DERIVATIVE; DEUTERIUM OXIDE; GLYCEROL; PROLINE DERIVATIVE; TRIPEPTIDE; WATER;

AQUEOUS SOLUTION; ARTICLE; CIRCULAR DICHROISM; ENTHALPY; HYDROGEN BOND; MOLECULE; PROTEIN STABILITY; PROTEIN STRUCTURE; ROOM TEMPERATURE; THERMODYNAMICS; ULTRAVIOLET RADIATION;

CIRCULAR DICHROISM; DEUTERIUM OXIDE; GLYCEROL; LYSINE; MODELS, MOLECULAR; OLIGOPEPTIDES; PROTEIN CONFORMATION; SOLUTIONS; WATER;

EID: 0038344087     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja034625j     Document Type: Article

References (61)

1. Epand, R. M; Scheraga, H. A. Biochemistry 1968, 7, 2864-2872.
2. Taniuchi, H.; Anfinsen, C. B. J. Biol. Chem. 1969, 244, 3864-3875.
3. Anfinsen, C. B. Science 1973, 181, 223-230.
4. Hermans, J., Jr.; Puett, D. Biopolymers 1971, 10, 895-914.
5. Kim, P. S.; Baldwin, R. L. Annu. Rev. Biochem. 1990, 59, 631-660.
6. Matthwes, C. R. Curr. Opin. Struct. Biol. 1991, 1, 28-35.
7. Davidson, E. R. Chem. Rev. 1993, 93, 2337.
8. Ptitsyn, O. B. Curr. Opin. Struct. Biol. 1995, 5, 74-78.
9. Karplus, M.; Sali, A. Curr. Opin. Struct. Biol. 1995, 5, 58-73.
10. Fersht, A. R.; Serrano, L. Curr. Opin. Struct. Biol. 1997, 7, 3-9.
11. Shakhnovich, E. I. Curr. Opin. Struct. Biol. 1997, 7, 29-40.
12. Chan, H. S.; Dill, K. A. Annu. Rev. Biophys. Biomol. Struct. 1997, 26, 425-459.
13. Lazaridis, T.; Karplus, M. Science 1997, 278, 1928-1931.
14. Baldwin, R. L. Nat. Struct. Biol. 1999, 6, 814-817.
15. Dobson, C. M.; Karplus, M. Curr. Opin. Struct. Biol. 1999, 9, 92-101.
16. Karplus, M.; Shakhnovich, E. In Protein Folding; Creighton, T. E., Ed.; W. H. Freeman: New York, 1992; p 127.
17. Bryngelson, J. D.; Onuchic, J. N.; Socci, N. D.; Wolynes, P. G. Proteins Struct. Funct. Genet. 1995, 21, 167-195.
18. Becker, O. M. J. Mol. Struct (TEOCHEM) 1997, 507, 398-399.
19. Dill, K. A. Protein Sci. 1999, 8, 1166-1180.
20. Honig, B.; Cohen, F. E. Folding Design 1996, 1, R17-R20.
21. Aurora, R.; Creamer, T. P., Srinivasan, R. Rose, G. D. J. Biol. Chem. 1997, 272, 1413-1416.
22. Baldwin, R. L.; Rose, G. D. Trends Biochem. Sci. 1999, 24, 77-83.
23. Shi, Z.; Woody, R. W.; Kallenbach, N. R. Adv. Protein Chem. 2002, 62, 163-240.
24. Kauzmann, W. Adv. Prot. Chem. 1959, 14, 1-63.
25. Tandford, C. Adv. Protein Chem. 1968, 23, 121-282.
26. Tiffany, M. L.; Krimm, S. Biopolymers 1968, 6, 1379-1382.
27. Andries, J. C.; Anderson, J. M.; Walton, A. G. Biopolymers 1971, 10, 1049-1057.
28. Mattice, W. L.; Riser, J. M.; Clark, D. S. Biochemistry 1976, 15, 4264-4272.
29. Mattice, W. L. Biopolymers 1974, 13, 169-183.
30. Dukor, R. K.; Keiderling, T. A. Biopolymers 1991, 31, 1747-1761.
31. Tiffany, M. L.; Krimm, S. Biopolymers 1968, 6, 1767-1770.
32. Tiffany, M. L.; Krimm, S. Biopolymers 1972, 11, 2309-2316.
33. Park, S.-H.; Shalongo, W.; Stellwagen, E. Protein Sci. 1997, 6, 1694-1700.
34. Shi, Z.; Olson, C. A.; Rose, G. D.; Baldwin, R. L.; Kallenbach, N. R. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 9190-9195.
35. Rucker, A. L.; Creamer, T. P. Protein Sci. 2002, 11, 980-985.
36. Poon, C.-D.; Samulski, E. T.; Weise, C. F.; Weisshaar, J. C. J. Am. Chem. Soc. 2000, 122, 5642-5643.
37. Woutersen, S.; Hamm, P. J. Phys. Chem. B. 2000, 104, 11 316-11 320.
38. Schweitzer-Stenner, R.; Eker, F.; Huang, Q.; Griebenow, K. J. Am. Chem. Soc. 2001, 123, 9628-9633.
39. Han W.-G.; Jalkanen, K. J.; Elstner, M.; Suhai, S. J. Phys. Chem. B 1998, 101, 2587-2602.
40. Mu, Y.; Stock, G. J. Phys. Chem. B. 2002, 106, 5294-5301.
41. Weise, C. F.; Weisshaar, J. C. J. Phys. Chem. B. 2003, 107, 3265-3277.
42. Schweitzer-Stenner, R. Biophys. J. 2002, 83, 523-532.
43. Eker, F.; Cao, X.; Nafie, L.; Schweitzer-Stenner, R. J. Am. Chem. Soc 2002, 124, 14 330-14 341.
44. Eker, F.; Cao, X.; Nafie, L.; Huang, Q.; Schweitzer-Stenner, R. J. Phys. Chem. B. 2003, 107, 358-365.
45. Glasoe, P. K.; Long, F. A. J. Phys. Chem. 1960, 64, 188-193.
46. Griebenow, K.; Diaz, L. Y.; Santos, A. M.; Montañez, C. I.; Rodriquez, L.; Vidal, M.; Barletta, G. J. Am. Chem. Soc 1999, 121, 8157-8163.
47. Jentzen, W.; Unger, E.; Karvounis, G.; Shelnutt, J. A.; Dreybrodt, W.; Schweitzer-Stenner, R. J. Phys. Chem. 1996, 100, 14 184-14 191.
48. Sreerema, N.; Woody, R. W. Biochemistry 1994, 33, 10 022-10 025.
49. Silligardi, G.; Drake, A. F. Biopolymers 1995, 37, 281-292.
50. Pajcini, V.; Chen, X. G.; Bormett, W.; Geib, S. J.; Asher, S. A J. Am. Chem. Soc. 1996, 118, 9716-9726.
51. Sieler, G.; Schweitzer-Stenner, R.; Holtz, J. S. W.; Pajcini, V.; Asher, S. A. J. Phys. Chem. B 1999, 103, 372-384.
52. Adzubei, A. A.; Stenberg M. J. E. Prot. Sci. 1994, 3, 2395-2410.
53. Barron, L. D.; Hecht, L.; Wilson, G. Biochemistry 1997, 36, 13 143-13 147.
54. Shi, Z.; Olson, C. A.; Kallenbach, N. R.; Sosnick, T. R. J. Am. Chem. Soc. 2002, 124, 13 994-13 995.
55. Griebenow, K.; Klibanov, A. M. J. Am. Chem. Soc. 1996, 47, 11 695-11 700.
56. Knubovets, T.; Osterhout, J. J.; Connolly, P. J.; Klibanov, A. M. Proc. Natl. Acad. Sci. 1999, 96, 1262-1267.
57. Griebenow, K.; Klibanov, A. M. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 10 969-10 976.
58. Ferreon, J. C.; Hilser, V. J. Protein Sci. 2003, 12, 447-457.
59. Pappu, R. V.; Strinivasan, R.; Rose, G. D. Proc. Natl. Acad. Sci. U.S.A. 97, 12 565-12 570.
60. Pappu, R. V.; Rose, G. D. Protein. Sci. 2002, 11, 2437-2455.
61. Flory, P. J. Statistical Mechanics of Chain Molecules; Hanser Publishers: Munich, 1969; Chapter 7.