The role of side chain conformational flexibility in surface recognition by Tenebrio molitor antifreeze protein

Protein Science

Volumn 12, Issue 7, 2003, Pages 1323-1331

  Daley, Margaret E ^a   Sykes, Brian D ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

Author keywords

helix; Antifreeze protein; Nuclear magnetic resonance; Side chain dynamics

Indexed keywords

ANTIFREEZE PROTEIN; ICE; THREONINE;

ARTICLE; CALCULATION; CRYSTALLIZATION; DYNAMICS; FREEZING; LOW TEMPERATURE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FUNCTION; TENEBRIO; TENEBRIO MOLITOR;

AMINO ACID SEQUENCE; ANIMALS; ANTIFREEZE PROTEINS; CRYSTALLOGRAPHY, X-RAY; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; PLIABILITY; PROTEIN CONFORMATION; PROTEIN ISOFORMS; SOLUBILITY; TEMPERATURE; TENEBRIO; THREONINE;

ARACHNIDA; HEXAPODA; TENEBRIO; TENEBRIO MOLITOR;

EID: 0038309646     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.0369503     Document Type: Article

References (39)

1. Baardsnes, J. and Davies, P.L. 2002. Contribution of hydrophobic residues to ice binding by fish type III antifreeze protein. Biochim. Biophys. Acta 1601: 49-54.
2. Baardsnes, J., Kondejewski, L.H., Hodges, R.S., Chao, H., Kay, C., and Davies, P.L. 1999. New ice-binding face for type I antifreeze protein. FEBS Lett. 463: 87-91.
3. Chao, H., Houston Jr., M.E., Hodges, R.S., Kay, C.M., Sykes, B.D., Loewen, M.C., Davies, P.L., and Sönnichsen, F.D. 1997. A diminished role for hydrogen bonds in antifreeze protein binding to ice. Biochemistry 36: 14652-14660.
4. Clore, G.M. and Gronenborn, A.M. 1989. Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy. Crit. Rev. Biochem. Mol. Biol. 24: 479-557.
5. Daley, M.E., Spyracopoulos, L., Jia, Z., Davies, P.L., and Sykes, B.D. 2002. Structure and dynamics of a β-helical antifreeze protein. Biochemistry 41: 5515-5525.
6. Davies, P.L. and Hew, C.L. 1990. Biochemistry of fish antifreeze proteins. FASEB J. 4: 2460-2468.
7. Davies, P.L. and Sykes, B.D. 1997. Antifreeze proteins. Curr. Opin. Struct. Biol. 7: 828-834.
8. Duman, J.G. 2001. Antifreeze and ice nucleator proteins in terrestrial arthropods. Annu. Rev. Physiol. 63: 327-357.
9. Dunbrack Jr., R.L. and Karplus, M. 1994. Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains. Nat. Struct. Biol. 1: 334-340.
10. Fletcher, G.L., Hew, C.L., and Davies, P.L. 2001. Antifreeze proteins of teleost fishes. Annu. Rev. Physiol. 63: 359-390.
11. Graether, S.P., Kuiper, M.J., Gagné, S.M., Walker, V.K., Jia, Z., Sykes, B.D., and Davies, P.L. 2000. β-helix structure and ice-binding properties of a hyperactive antifreeze protein from an insect. Nature 406: 325-328.
12. Graether, S.P., Slupsky, C.M., Davies, P.L., and Sykes, B.D. 2001. Structure of type I antifreeze protein and mutants in supercooled water. Biophys. J. 81: 1677-1683.
13. Graham, L.A., Liou, Y.-C., Watker, V.K., and Davies, P.L. 1997. Hyperactive antifreeze protein from beetles. Nature 388: 727-728.
14. Gronwald, W., Chao, H., Reddy, D.V., Davies, P.L., Sykes, B.D., and Sönnichsen, F.D. 1996. NMR characterization of side chain flexibility and backbone structure in the type I antifreeze protein at near freezing temperatures. Biochemistry 35: 16698-16704.
15. Haymet, A.D.J., Ward, L.G., Harding, M.M., and Knight, C.A. 1998. Valine substituted winter flounder 'antifreeze': Preservation of ice growth hysteresis. FEBS Lett. 430: 301-306.
16. Haymet, A.D.J., Ward, L.G., and Harding, M.M. 1999. Winter flounder "anti-freeze" proteins: Synthesis and ice growth inhibition of analogues that probe the relative importance of hydrophobic and hydrogen-bonding interactions. J. Am. Chem. Soc. 121: 941-948.
17. Houston Jr., M.E., Chao, H., Hodges, R.S., Sykes, B.D., Kay, C.M., Sönnichsen, F.D., Loewen, M.C., and Davies, P.L., 1998. Binding of an oligopeptide to a specific plane of ice. J. Biol. Chem. 273: 11714-11718.
18. Jeener, J., Meier, B.H., Bachmann, P., and Ernst, R.R. 1979. Investigation of exchange processes by two-dimensional NMR spectroscopy. J. Chem. Phys. 71: 4546-4553.
19. Jia, Z. and Davies, P.L. 2002. Antifreeze proteins: An unusual receptor-ligand interaction. Trends Biochem Sci. 27: 101-106.
20. Karplus, M. 1959. Contact electron-spin coupling of nuclear magnetic moments. J. Chem. Phys. 30: 11-15.
21. -. 1963. Vicinal proton coupling in nuclear magnetic resonance. J. Am. Chem. Soc. 85: 2870-2871.
22. Kim, Y. and Prestegard, J.H. 1989. Measurement of vicinal couplings from cross peaks in COSY spectra. J. Magn. Reson. 84: 9-13.
23. Kimura, S.R., Brower, R.C., Vajda, S., and Camacho, C.J. 2001. Dynamical view of the positions of key side chains in protein-protein recognition. Biophys. J. 80: 635-642.
24. Knight, C.A. and Wierzbicki, A. 2001. Adsorption of biomolecules to ice and their effects upon ice growth. 2. A discussion of the basic mechanism of "antifreeze" phenomena. Cryst. Growth Des. 1: 439-446.
25. Knight, C.A., Cheng, C.C., and DeVries, A.L. 1991. Adsorption of α-helical antifreeze peptides on specific ice crystal surface planes. Biophys. J. 59: 409-418.
26. Kraulis, P.J. 1991. Molscript - A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24: 946-950.
27. Liou, Y.-C., Daley, M.E., Graham, L.A., Kay, C.M., Walker, V.K., Sykes, B.D., and Davies, P.L. 2000a. Folding and structural characterization of highly disulfide-bonded beetle antifreeze protein produced in bacteria. Protein Expr. Purif. 19: 148-157.
28. Liou, Y.-C., Tocilj, A., Davies, P.L., and Jia, Z. 2000b. Mimicry of ice structure by surface hydroxyls and water of a β-helix antifreeze protein. Nature 406: 322-324.
29. Marshall, C.B., Daley, M.E., Graham, L.A., Sykes, B.D., and Davies, P.L. 2002. Identification of the ice-binding face of antifreeze protein from Tenebrio molitor. FEBS Lett. 529: 261-267.
30. Merritt, E.A. and Bacon, D.J. 1997. Raster3D: Photorealistic molecular graphics. Method Enzymol. 277: 505-524.
31. Rance, M., Sørensen, O.W., Bodenhausen, G., Wagner, G., Ernst, R.R., and Wüthrich, K. 1983. Improved spectral resolution in COSY 1H NMR spectra of proteins via double quantum filtering. Biochem. Biophys. Res. Commun. 117: 479-485.
32. Raymond, J.A. and DeVries, A.L. 1977. Adsorption inhibition as a mechanism of freezing resistance in polar fishes. Proc. Natl. Acad. Sci. 74: 2589-2593.
33. Sicheri, F. and Yang, D.S.C. 1995. Ice-binding structure and mechanism of an antifreeze protein from winter flounder. Nature 375: 427-431.
34. Sidebottom, C., Buckley, S., Pudney, P., Twigg, S., Jarman, C., Holt, C., Telford, J., McArthur, A., Worrall, D., Hubbard, R., et al. 2000. Heat-stable antifreeze protein from grass. Nature 406: 256.
35. Wüthrich, K. 1986. NMR of proteins and nucleic acids. J. Wiley, New York.
36. Wen, D. and Laursen, R.A. 1992. A model for binding of an antifreeze polypeptide to ice. Biophys. J. 63: 1659-1662.
37. Wolfram, S. 1996. Mathematica version 3.0. Wolfram Research Inc. http://www.wolfram.com.
38. Worrall, D., Elias, L., Ashford, D., Smallwood, M., Sidebottom, C., Lillford, P., Telford, J., Holt, C., and Bowles, D. 1998. A carrot leucine-rich-repeat protein that inhibits ice recrystallization. Science 282: 115-117.
39. Zhang, W. and Laursen, R.A. 1998. Structure-function relationships in a type I antifreeze polypeptide: The role of threonine methyl and hydroxyl groups in antifreeze activity. J. Biol. Chem. 273: 34806-34812.