Detection of 2′-O-ribose methylation sites on rice 25 S rRNA

Acta Biochimica et Biophysica Sinica

Volumn 35, Issue 3, 2003, Pages 289-295

  Li, Wei ^a   Jiang, Ge ^a   Jin, You Xin ^a   Wang, De Bao ^a  

^a Chinese Academy of Sciences   (China)

Author keywords

Plant; Ribose methylation site; Ribosomal RNA; Rice

Indexed keywords

RIBOSE; RIBOSOME RNA; RNA 25S; RNA 28S; UNCLASSIFIED DRUG; FUNGAL RNA; PLANT RNA; RNA, RIBOSOMAL, 25S;

ARABIDOPSIS; ARTICLE; CONCENTRATION RESPONSE; EUKARYOTE; REVERSE TRANSCRIPTION; RICE; RNA METHYLATION; RNA SYNTHESIS; SEQUENCE ALIGNMENT; SPECIES DIFFERENCE; YEAST; BINDING SITE; GENETICS; METABOLISM; METHYLATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY;

ARABIDOPSIS; EUKARYOTA;

ARABIDOPSIS; BASE SEQUENCE; BINDING SITES; METHYLATION; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; RIBOSE; RNA, FUNGAL; RNA, PLANT; RNA, RIBOSOMAL; RNA, RIBOSOMAL, 28S; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 0038220966     PISSN: 05829879     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (20)

1. Maden BE. The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog Nucleic Acid Res Mol Biol, 1990, 39: 241-303
2. Brimacombe R, Mitchell P, Osswald M, Stade K, Bochkariov D. Clustering of modified nucleotides at the functional center of bacterial ribosomal RNA. FASEB J, 1993, 7: 161-167
3. Bachellerie JP, Cavaille J, Qu LH. Nucleotide modifications of eukaryotic rRNAs: The world of small nucleolar RNA guides revisited. In: Garrett RA, Douthwaite SR, Matheson AT, Moore PB, Noller HF eds. The Ribosome: Structure, Function, Antibiotics and Cellular Interactions, Washington, DC: ASM Press, 2000, 191-203
4. Maxwell ES, Fournier MJ. The small nucleolar RNAs. Annu Rev Biochem, 1995, 35: 897-934
5. Bachellerie JP, Michot B, Nicoloso M, Balakin A, Ni J, Fournier MJ. Antisense snoRNAs: A family of nucleolar RNAs with long complementarities to rRNA. Trends Biochem Sci, 1995, 20 (7): 261-264
6. Bachellerie JP, Cavaille J. Guiding ribose methylation of rRNA. Trends Biochem Sci, 1997, 22(7): 257-261
7. Cavaille J, Nicoloso M, Bachellerie JP. Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature, 1996, 383(6602): 732-735
8. Kiss-László Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T. Site-specific ribose methylation of preribosomal RNA: A novel funtion for small nucleolar RNAs. Cell, 1996, 85: 1077-1088
9. Qu LH, Meng Q, Zhou H, Chen YQ. Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana. Nucleic Acids Res, 2001, 29(7): 1623-1630
10. Barneche F, Gaspin C, Guyot R, Echeverria M. Identification of 66 box C/D snoRNAs in Arabidopsis thaliana: Extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2′-O-methylation sites. J Mol Biol, 2001, 311(1): 57-73
11. Brown JW, Clark GP, Leader DJ, Simpson CG, Lowe T. Multiple snoRNA gene clusters from Arabidopsis. RNA, 2001, 7(12): 1817-1832
12. Jiang G, Xu F, Jin YX, Wang DB. Two closely linked rice U14 box C/D snoRNAs. Prog Nat Sci, 2002, 12: 20-23
13. Jiang G, Li W, Jin YX, Wang DB. Identification of a snoRNA47 gene cluster in Oryza sativa. Acta Biochim Biophys Sin, 2002, 34 (5): 667-670
14. Jiang G, Chen XL, Li W, Jin YX, Wang DB. Identification and characterization of a novel U14 snoRNA gene cluster in Oryza sativa. Gene, 2002, 294: 187-196
15. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning: A Laboratory Manual, 2nd ed. New York: Cold Spring Harbor Laboratory Press, 1989
16. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K. Short Protocols in Molecular Biology, 3rd ed. New York: John Wiley & Sons Inc, 1995
17. Lowe TM, Eddy SR. A computational screen for methylation guide snoRNAs in yeast. Science, 1999, 283(5405): 1168-1171
18. Maden BE. Mapping 2′-O-methyl groups in ribosomal RNA. Methods, 2001, 25(3): 374-382
19. Cecchini JP, Miassod R. Studies on the methylation of cytoplasmic ribosomal RNA from cultured higher plant cells. Eur J Biochem, 1979, 98: 203-214
20. Bachellerie JP, Cavaille J. Small nucleolar RNAs guide the ribose methylations of eukaryotic rRNAs. In: Grosjean H, Benne R eds. Modifications and Editing of RNA, Washington, DC: ASM Press, 2000, 255-272