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Volumn 294, Issue 1-2, 2002, Pages 187-196

Identification and characterization of a novel U14 small nucleolar RNA gene cluster in Oryza sativa

Author keywords

Homology; Methylation; Ribosomal RNA; Rice; Yeast

Indexed keywords

COMPLEMENTARY DNA; NUCLEOTIDE; RNA 18S; RNA PRECURSOR; SMALL NUCLEOLAR RNA; SPACER DNA; URIDINE;

EID: 0037055281     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(02)00767-9     Document Type: Article
Times cited : (4)

References (36)
  • 3
    • 0003081816 scopus 로고    scopus 로고
    • Nucleotide modifications in eukaryotic rRNAs: The world of small nucleolar RNA guides revisited
    • R.A. Garrett, S.R. Douthwaite, A. Liljas, A.T. Matheson, P.B. Moore, & H.F. Noller. Washington, DC: American Society of Microbiology Press
    • Bachellerie J.P., Cavaille J., Qu L.H. Nucleotide modifications in eukaryotic rRNAs: the world of small nucleolar RNA guides revisited. Garrett R.A., Douthwaite S.R., Liljas A., Matheson A.T., Moore P.B., Noller H.F., The Ribosome: Structure, Function, Antibiotics, and Cellular Interactions. 2000;191-203 American Society of Microbiology Press, Washington, DC.
    • (2000) The Ribosome: Structure, Function, Antibiotics, and Cellular Interactions , pp. 191-203
    • Bachellerie, J.P.1    Cavaille, J.2    Qu, L.H.3
  • 4
    • 0030572699 scopus 로고    scopus 로고
    • The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions
    • Balakin A.G., Smith L., Fournier M.J. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell. 86:1996;823-834.
    • (1996) Cell , vol.86 , pp. 823-834
    • Balakin, A.G.1    Smith, L.2    Fournier, M.J.3
  • 5
    • 0035800574 scopus 로고    scopus 로고
    • Identification of 66 box C/D snoRNAs in Arabidopsis thaliana duplications generated multiple isoforms predicting new RNA 2′-O-methylation sites
    • Barneche F., Gaspin C., Guyot R., Echeverria M. Identification of 66 box C/D snoRNAs in Arabidopsis thaliana duplications generated multiple isoforms predicting new RNA 2′-O-methylation sites. J. Mol. Biol. 3:2001;57-73.
    • (2001) J. Mol. Biol. , vol.3 , pp. 57-73
    • Barneche, F.1    Gaspin, C.2    Guyot, R.3    Echeverria, M.4
  • 6
    • 0027519205 scopus 로고
    • Clustering of modified nucleotides at the functional center of bacterial ribosomal RNA
    • Brimacombe R., Mitchell P., Osswald M., Stade K., Bochkariov D. Clustering of modified nucleotides at the functional center of bacterial ribosomal RNA. FASEB J. 7:1993;161-167.
    • (1993) FASEB J. , vol.7 , pp. 161-167
    • Brimacombe, R.1    Mitchell, P.2    Osswald, M.3    Stade, K.4    Bochkariov, D.5
  • 8
    • 0018496781 scopus 로고
    • Studies on the methylation of cytoplasm RNA from cultured higher plant cells
    • Cecchini J.P., Miassod R. Studies on the methylation of cytoplasm RNA from cultured higher plant cells. Eur. J. Biochem. 98:1979;203-214.
    • (1979) Eur. J. Biochem. , vol.98 , pp. 203-214
    • Cecchini, J.P.1    Miassod, R.2
  • 9
    • 0028016502 scopus 로고
    • Small nuclear RNAs genes transcribed by either RNA polymerase II or RNA polymerase III in monocot plants share three promoter elements and use a strategy to regulate gene expression different from that used by their dicot plant counterparts
    • Connelly S., Marshallsay C., Leader D.J., Brown J.W.S., Filipowicz W. Small nuclear RNAs genes transcribed by either RNA polymerase II or RNA polymerase III in monocot plants share three promoter elements and use a strategy to regulate gene expression different from that used by their dicot plant counterparts. Mol. Cell. Biol. 14:1994;5910-5919.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 5910-5919
    • Connelly, S.1    Marshallsay, C.2    Leader, D.J.3    Brown, J.W.S.4    Filipowicz, W.5
  • 10
    • 0031942702 scopus 로고    scopus 로고
    • The U14 snoRNA is required for 2′-O-ribose methylation of the pre-18S rRNA in Xenopus oocytes
    • Dunbar D.A., Baserga S. The U14 snoRNA is required for 2′-O-ribose methylation of the pre-18S rRNA in Xenopus oocytes. RNA. 4:1998;195-204.
    • (1998) RNA , vol.4 , pp. 195-204
    • Dunbar, D.A.1    Baserga, S.2
  • 11
    • 0035355205 scopus 로고    scopus 로고
    • RNomics: An experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse
    • Huttenhofer A., Kiefmann M., Meier-Ewert S., O'Brien J., Lehrach H., Bachellerie J.P., Brosius J. RNomics: an experimental approach that identifies 201 candidates for novel, small, non-messenger RNAs in mouse. EMBO J. 20:2001;2943-2953.
    • (2001) EMBO J. , vol.20 , pp. 2943-2953
    • Huttenhofer, A.1    Kiefmann, M.2    Meier-Ewert, S.3    O'Brien, J.4    Lehrach, H.5    Bachellerie, J.P.6    Brosius, J.7
  • 12
    • 0030604698 scopus 로고    scopus 로고
    • Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
    • Kiss-Laszlo Z., Henry Y., Bachellerie J.P., Caizergues-Ferrer M., Kiss T. Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell. 85:1996;1077-1088.
    • (1996) Cell , vol.85 , pp. 1077-1088
    • Kiss-Laszlo, Z.1    Henry, Y.2    Bachellerie, J.P.3    Caizergues-Ferrer, M.4    Kiss, T.5
  • 13
    • 0028641155 scopus 로고
    • Molecular characterization of plant U14 small nucleolar RNA genes: Closely linked genes are transcribed as a polycistronic U14 transcript
    • Leader D.J., Sanders J.F., Waugh R., Shaw P.J., Brown J.W.S. Molecular characterization of plant U14 small nucleolar RNA genes: closely linked genes are transcribed as a polycistronic U14 transcript. Nucleic Acids Res. 22:1994;5196-5200.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5196-5200
    • Leader, D.J.1    Sanders, J.F.2    Waugh, R.3    Shaw, P.J.4    Brown, J.W.S.5
  • 15
    • 0001816286 scopus 로고    scopus 로고
    • Isolation and analysis of messenger RNA from plant cells cloning of cDNAs
    • S.C. Melody. Berlin, Heidelerg: Springer-Verleg
    • Lessard P., Decroocq V., Thomas M. Isolation and analysis of messenger RNA from plant cells cloning of cDNAs. Melody S.C., Plant Molecular Biology A Laboratory Manual. 1997;154-198 Springer-Verleg, Berlin, Heidelerg.
    • (1997) Plant Molecular Biology A Laboratory Manual , pp. 154-198
    • Lessard, P.1    Decroocq, V.2    Thomas, M.3
  • 16
    • 0025166298 scopus 로고
    • Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae
    • Li H.V., Zagorski J., Fournier M.J. Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol. Cell Biol. 10:1990;1145-1152.
    • (1990) Mol. Cell Biol. , vol.10 , pp. 1145-1152
    • Li, H.V.1    Zagorski, J.2    Fournier, M.J.3
  • 17
    • 0027381917 scopus 로고
    • Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
    • Liu X.W., Gorovsky M.A. Mapping the 5′ and 3′ ends of Tetrahymena thermophila mRNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res. 21:1993;4954-4960.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4954-4960
    • Liu, X.W.1    Gorovsky, M.A.2
  • 18
    • 0025049439 scopus 로고
    • Mouse U14 snRNA is encoded in and intron of the mouse cognate hsc70 heat shock gene
    • Liu J., Maxwell E.S. Mouse U14 snRNA is encoded in and intron of the mouse cognate hsc70 heat shock gene. Nucleic Acids Res. 18:1990;96-5200.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 96-5200
    • Liu, J.1    Maxwell, E.S.2
  • 19
    • 0033582628 scopus 로고    scopus 로고
    • A computational screen for methylation guide snoRNAs in yeast
    • Lowe T.M., Eddy S.R. A computational screen for methylation guide snoRNAs in yeast. Science. 283:1999;1168-1171.
    • (1999) Science , vol.283 , pp. 1168-1171
    • Lowe, T.M.1    Eddy, S.R.2
  • 20
    • 0031788801 scopus 로고    scopus 로고
    • Cbf5p, a potential pseudoridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNAs and constitute a common bipartite structure
    • Luhrmann R. Cbf5p, a potential pseudoridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNAs and constitute a common bipartite structure. RNA. 4:1998;1549-1568.
    • (1998) RNA , vol.4 , pp. 1549-1568
    • Luhrmann, R.1
  • 21
    • 0025580878 scopus 로고
    • The numerous modified nucleotides in eukaryotic ribosomal RNA
    • Maden B.E.H. The numerous modified nucleotides in eukaryotic ribosomal RNA. Prog. Nucleic Acid Res. Mol. Biol. 39:1990;241-301.
    • (1990) Prog. Nucleic Acid Res. Mol. Biol. , vol.39 , pp. 241-301
    • Maden, B.E.H.1
  • 24
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson W.R., Lipmen D.J. Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA. 85:1988;2444-2448.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipmen, D.J.2
  • 25
    • 0035312246 scopus 로고    scopus 로고
    • Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana
    • Qu L.H., Meng Q., Zhou H., Chen Y.Q. Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana. Nucleic Acids Res. 29:2001;1623-1630.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 1623-1630
    • Qu, L.H.1    Meng, Q.2    Zhou, H.3    Chen, Y.Q.4
  • 27
    • 0030656387 scopus 로고    scopus 로고
    • Sno storm in the nucleolus: New roles for myriad small RNPs
    • Smith C.M., Steiz J.A. Sno storm in the nucleolus: new roles for myriad small RNPs. Cell. 89:1997;669-672.
    • (1997) Cell , vol.89 , pp. 669-672
    • Smith, C.M.1    Steiz, J.A.2
  • 28
    • 0021760552 scopus 로고
    • The complete nucleotide sequence of a rice 17S rRNA gene
    • Takaiwa F., Oono K., Sugiura M. The complete nucleotide sequence of a rice 17S rRNA gene. Nucleic Acids Res. 12:1984;5441-5448.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 5441-5448
    • Takaiwa, F.1    Oono, K.2    Sugiura, M.3
  • 29
    • 0030963268 scopus 로고    scopus 로고
    • Function and synthesis of small nucleolar RNAs
    • Tollervey D., Kiss T. Function and synthesis of small nucleolar RNAs. Curr. Opin. Cell Biol. 3:1997;337-342.
    • (1997) Curr. Opin. Cell Biol. , vol.3 , pp. 337-342
    • Tollervey, D.1    Kiss, T.2
  • 30
    • 0023928007 scopus 로고
    • Homologous genes for mouse 4.5S hybRNA are found in all eukaryotes and their low molecular weight RNA transcripts intermolecularly hybridize with eukaryotic 18S ribosomal RNAs
    • Trinh-Rohlik Q., Maxwell E.S. Homologous genes for mouse 4.5S hybRNA are found in all eukaryotes and their low molecular weight RNA transcripts intermolecularly hybridize with eukaryotic 18S ribosomal RNAs. Nucleic Acids Res. 16:1988;6041-6056.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 6041-6056
    • Trinh-Rohlik, Q.1    Maxwell, E.S.2
  • 31
    • 0032214692 scopus 로고    scopus 로고
    • Modification of U6 spliceosomal RNA is guided by other small RNAs
    • Tycowski K.T., You Z.H., Graham P.J., Steitz J.A. Modification of U6 spliceosomal RNA is guided by other small RNAs. Mol. Cell. 2:1998;629-638.
    • (1998) Mol. Cell , vol.2 , pp. 629-638
    • Tycowski, K.T.1    You, Z.H.2    Graham, P.J.3    Steitz, J.A.4
  • 32
    • 0024801399 scopus 로고
    • A U-snRNA gene-specific upstream element and a -30 TATA box are required for transcription of the U2 snRNA gene of Arabidopsis thaliana
    • Vankan P., Filipowicz W. A U-snRNA gene-specific upstream element and a -30 TATA box are required for transcription of the U2 snRNA gene of Arabidopsis thaliana. EMBO J. 8:1989;3875-3882.
    • (1989) EMBO J. , vol.8 , pp. 3875-3882
    • Vankan, P.1    Filipowicz, W.2
  • 33
    • 0031788801 scopus 로고    scopus 로고
    • Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNAs and constitute a common bipartite structure
    • Watkins N.J., Gottschalk A., Nwubauer G., Kastner B., Fabrizio P., Mann M., Luhrmann R. Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNAs and constitute a common bipartite structure. RNA. 4:1998;1549-1568.
    • (1998) RNA , vol.4 , pp. 1549-1568
    • Watkins, N.J.1    Gottschalk, A.2    Nwubauer, G.3    Kastner, B.4    Fabrizio, P.5    Mann, M.6    Luhrmann, R.7
  • 34
    • 0034721649 scopus 로고    scopus 로고
    • A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP
    • Watkins N.J., Segault V., Charpentier B., Nottrott S., Fabrizio P., Bachi A., et al. A common core RNP structure shared between the small nucleolar box C/D RNPs and the spliceosomal U4 snRNP. Cell. 103:2000;457-466.
    • (2000) Cell , vol.103 , pp. 457-466
    • Watkins, N.J.1    Segault, V.2    Charpentier, B.3    Nottrott, S.4    Fabrizio, P.5    Bachi, A.6
  • 35
    • 0031031451 scopus 로고    scopus 로고
    • Identification of specific nucleotide sequences and structural elements required for intronic U14 snoRNA processing
    • Xia L., Watkins N.J., Maxwell E. Identification of specific nucleotide sequences and structural elements required for intronic U14 snoRNA processing. RNA. 3:1997;17-26.
    • (1997) RNA , vol.3 , pp. 17-26
    • Xia, L.1    Watkins, N.J.2    Maxwell, E.3
  • 36
    • 0024062998 scopus 로고
    • Characterization of an SNR Gene Locus in Saccharomyces cerevisiae that specifies both dispensable and essential small nuclear RNAs
    • Zagorski J., Tollervey D., Fournier M.J. Characterization of an SNR Gene Locus in Saccharomyces cerevisiae that specifies both dispensable and essential small nuclear RNAs. Mol. Cell Biol. 8:1988;3282-3290.
    • (1988) Mol. Cell Biol. , vol.8 , pp. 3282-3290
    • Zagorski, J.1    Tollervey, D.2    Fournier, M.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.