메뉴 건너뛰기




Volumn 6, Issue 3, 2003, Pages 317-321

High-throughput SNP analysis for genetic association studies

Author keywords

Complex diseases; DNA pooling; Genetic discovery; Linkage disequilibrium; Primer extension

Indexed keywords

DNA; GENE PRODUCT; LYMPHOTOXIN; PROTEIN D AKAP 2; TUMOR MARKER; UNCLASSIFIED DRUG;

EID: 0038119662     PISSN: 13676733     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (36)

References (57)
  • 5
    • 84947198428 scopus 로고    scopus 로고
    • Bethesda, MD, USA
    • dbSNP Summary: National Center for Biotechnology Information, Bethesda, MD, USA. http://www.ncbi.nlm.nih.gov/SNP/snp_summary.cgi
    • dbSNP Summary
  • 6
    • 0037250403 scopus 로고    scopus 로고
    • The SNP Consortium website: Past, present and future
    • Thorisson GA, Stein LD: The SNP Consortium website: Past, present and future. Nucleic Acids Res (2003) 31:124-127.
    • (2003) Nucleic Acids Res , vol.31 , pp. 124-127
    • Thorisson, G.A.1    Stein, L.D.2
  • 8
    • 0036081484 scopus 로고    scopus 로고
    • HGVbase: A human sequence variation database emphasizing data quality and a broad spectrum of data sources
    • Fredman D, Siegfried M, Yuan YP, Bork P, Lehvaslaiho H, Brookes AJ: HGVbase: A human sequence variation database emphasizing data quality and a broad spectrum of data sources. Nucleic Acids Res (2002) 30:387-391.
    • (2002) Nucleic Acids Res , vol.30 , pp. 387-391
    • Fredman, D.1    Siegfried, M.2    Yuan, Y.P.3    Bork, P.4    Lehvaslaiho, H.5    Brookes, A.J.6
  • 10
    • 0036956227 scopus 로고    scopus 로고
    • Gene-based SNP discovery as part of the Japanese Millennium Genome Project: Identification of 190,562 genetic variations in the human genome. Single-nucleotide polymorphism
    • Haga H, Yamada R, Ohnishi Y, Nakamura Y, Tanaka T: Gene-based SNP discovery as part of the Japanese Millennium Genome Project: Identification of 190,562 genetic variations in the human genome. Single-nucleotide polymorphism. J Hum Genet (2002) 47:605-610.
    • (2002) J Hum Genet , vol.47 , pp. 605-610
    • Haga, H.1    Yamada, R.2    Ohnishi, Y.3    Nakamura, Y.4    Tanaka, T.5
  • 11
    • 0035094764 scopus 로고    scopus 로고
    • Variation is the spice of life
    • Kruglyak L, Nickerson DA: Variation is the spice of life. Nat Genet (2001) 27:234-236.
    • (2001) Nat Genet , vol.27 , pp. 234-236
    • Kruglyak, L.1    Nickerson, D.A.2
  • 12
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N, Merikangas K: The future of genetic studies of complex human diseases. Science (1996) 273:1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 13
    • 0029805706 scopus 로고    scopus 로고
    • The new genomics: Global views of biology
    • Lander ES: The new genomics: Global views of biology. Science (1996) 274:536-539.
    • (1996) Science , vol.274 , pp. 536-539
    • Lander, E.S.1
  • 15
    • 0032533647 scopus 로고    scopus 로고
    • 4-Mb high-density single nucleotide polymorphism-based map around human APOE
    • Lai E, Riley J, Purvis I, Roses A: 4-Mb high-density single nucleotide polymorphism-based map around human APOE. Genomics (1998) 54:31-38.
    • (1998) Genomics , vol.54 , pp. 31-38
    • Lai, E.1    Riley, J.2    Purvis, I.3    Roses, A.4
  • 19
    • 0033039497 scopus 로고    scopus 로고
    • Prospects for whole-genome linkage disequilibrium mapping of common disease genes
    • Kruglyak L: Prospects for whole-genome linkage disequilibrium mapping of common disease genes. Nat Genet (1999) 22:139-144.
    • (1999) Nat Genet , vol.22 , pp. 139-144
    • Kruglyak, L.1
  • 20
    • 0033920756 scopus 로고    scopus 로고
    • A look at linkage disequilibrium
    • Boehnke M: A look at linkage disequilibrium. Nat Genet (2000) 25:246-247.
    • (2000) Nat Genet , vol.25 , pp. 246-247
    • Boehnke, M.1
  • 21
    • 0033786787 scopus 로고    scopus 로고
    • Linkage disequilibrium and the search for complex disease genes
    • Jorde LB: Linkage disequilibrium and the search for complex disease genes. Genome Res (2000) 10:1435-1444.
    • (2000) Genome Res , vol.10 , pp. 1435-1444
    • Jorde, L.B.1
  • 26
    • 0034791032 scopus 로고    scopus 로고
    • Islands of linkage disequilibrium
    • Goldstein DB: Islands of linkage disequilibrium. Nat Genet (2001) 29:109-111. An informative survey of issues surrounding genetic variation, and their implications for the selection of SNP markers for genome-wide association studies.
    • (2001) Nat Genet , vol.29 , pp. 109-111
    • Goldstein, D.B.1
  • 27
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • Jeffreys AJ, Kauppi L, Neumann R: Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat Genet (2001) 29:217-222.
    • (2001) Nat Genet , vol.29 , pp. 217-222
    • Jeffreys, A.J.1    Kauppi, L.2    Neumann, R.3
  • 31
    • 0033018816 scopus 로고    scopus 로고
    • Reliable identification of large numbers of candidate SNPs from public EST data
    • Buetow KH, Edmonson MN, Cassidy AB: Reliable identification of large numbers of candidate SNPs from public EST data. Nat Genet (1999) 21:323-325.
    • (1999) Nat Genet , vol.21 , pp. 323-325
    • Buetow, K.H.1    Edmonson, M.N.2    Cassidy, A.B.3
  • 32
    • 0033779878 scopus 로고    scopus 로고
    • Genome-wide analysis of single-nucleotie polymorphims in human expressed sequences
    • Irizarry K, Kustanovich V, Li C, Brown N, Nelson S, Wong W, Lee CJ: Genome-wide analysis of single-nucleotie polymorphims in human expressed sequences. Nat Genet (2000) 26:233-236.
    • (2000) Nat Genet , vol.26 , pp. 233-236
    • Irizarry, K.1    Kustanovich, V.2    Li, C.3    Brown, N.4    Nelson, S.5    Wong, W.6    Lee, C.J.7
  • 33
    • 0035065577 scopus 로고    scopus 로고
    • Single-nucleotide polymorphisms in the public domain: How useful are they?
    • Marth G, Yeh R, Minton M, Donaldson R, Li Q, Duan S, Davenport R, Miller RD, Kwok PY: Single-nucleotide polymorphisms in the public domain: How useful are they? Nat Genet (2001) 27:371-372. A positive view on the usefulness of SNPs available in public databases.
    • (2001) Nat Genet , vol.27 , pp. 371-372
    • Marth, G.1    Yeh, R.2    Minton, M.3    Donaldson, R.4    Li, Q.5    Duan, S.6    Davenport, R.7    Miller, R.D.8    Kwok, P.Y.9
  • 34
    • 0038594338 scopus 로고    scopus 로고
    • The SNP Consortium Ltd
    • Allele frequency/Genotype project: The SNP Consortium Ltd. http://snp1.cshl.org/allele_frequency_project
  • 36
    • 0037580177 scopus 로고    scopus 로고
    • San Diego, CA, USA
    • Sequenom RealSNP, San Diego, CA, USA. http://www.realsnp.com
    • Sequenom RealSNP
  • 37
    • 0011322888 scopus 로고    scopus 로고
    • Technologies for the analysis of singlenucleotide polymorphisms: An overview
    • Kalow W, Meyer UA, Tyndale RT (Eds), Marcel Dekker Inc, New York, NY, USA
    • Grant DM, Phillips MS: Technologies for the analysis of singlenucleotide polymorphisms: An overview. In: Pharmacogenomics. Kalow W, Meyer UA, Tyndale RT (Eds), Marcel Dekker Inc, New York, NY, USA (2001) 113:183-190.
    • (2001) Pharmacogenomics , vol.113 , pp. 183-190
    • Grant, D.M.1    Phillips, M.S.2
  • 38
    • 0036682101 scopus 로고    scopus 로고
    • Single nucleotide polymorphism seeking long term association with complex disease
    • Kirk BW, Feinsod M, Favis R, Kliman RM, Barany F: Single nucleotide polymorphism seeking long term association with complex disease. Nucleic Acids Res (2002) 30:3295-3311. A comprehensive overview of available SNP analysis technologies.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3295-3311
    • Kirk, B.W.1    Feinsod, M.2    Favis, R.3    Kliman, R.M.4    Barany, F.5
  • 42
    • 0025650533 scopus 로고
    • A primerguided nucleotide incorporation assay in the genotyping of apolipoprotein E
    • Syvanen AC, Aalto-Setala K, Harju L, Kontula K, Soderlund H: A primerguided nucleotide incorporation assay in the genotyping of apolipoprotein E. Genomics (1990) 8:684-692.
    • (1990) Genomics , vol.8 , pp. 684-692
    • Syvanen, A.C.1    Aalto-Setala, K.2    Harju, L.3    Kontula, K.4    Soderlund, H.5
  • 44
    • 0030885877 scopus 로고    scopus 로고
    • Fluorescence energy transfer detection as a homogeneous DNA diagnostic method
    • Chen X, Zehnbauer B, Gnirke A, Kwok PY: Fluorescence energy transfer detection as a homogeneous DNA diagnostic method. Proc Natl Acad Sci USA (1997) 94:10756-10761.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 10756-10761
    • Chen, X.1    Zehnbauer, B.2    Gnirke, A.3    Kwok, P.Y.4
  • 47
    • 0031734601 scopus 로고    scopus 로고
    • High level multiplex genotyping by MALDI-TOF mass spectrometry
    • Ross P, Hall L, Smirnov I, Haff L: High level multiplex genotyping by MALDI-TOF mass spectrometry. Nat Biotechnol (1998) 16:1347-1351.
    • (1998) Nat Biotechnol , vol.16 , pp. 1347-1351
    • Ross, P.1    Hall, L.2    Smirnov, I.3    Haff, L.4
  • 48
    • 0035895258 scopus 로고    scopus 로고
    • High-throughput development and characterization of a genomewide collection of genebased single nucleotide polymorphism markers by chip-based matrixassisted laser desorption/ionization time-of-flight mass spectrometry
    • Buetow KH, Edmonson M, MacDonald R, Clifford R, Yip P, Kelley J, Little DP, Strausberg R, Koester H, Cantor CR, Braun A: High-throughput development and characterization of a genomewide collection of genebased single nucleotide polymorphism markers by chip-based matrixassisted laser desorption/ionization time-of-flight mass spectrometry. Proc Natl Acad Sci USA (2001) 98:581-584.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 581-584
    • Buetow, K.H.1    Edmonson, M.2    MacDonald, R.3    Clifford, R.4    Yip, P.5    Kelley, J.6    Little, D.P.7    Strausberg, R.8    Koester, H.9    Cantor, C.R.10    Braun, A.11
  • 54
    • 0036301060 scopus 로고    scopus 로고
    • Large-scale determination of SNP allele frequencies in DNA pools using MALDI-TOF mass spectrometry
    • Werner M, Sych M, Herbon N, Illig T, Konig IR, Wjst M: Large-scale determination of SNP allele frequencies in DNA pools using MALDI-TOF mass spectrometry. Hum Mutat (2002) 20:57-64.
    • (2002) Hum Mutat , vol.20 , pp. 57-64
    • Werner, M.1    Sych, M.2    Herbon, N.3    Illig, T.4    Konig, I.R.5    Wjst, M.6
  • 56
    • 18744407845 scopus 로고    scopus 로고
    • Functional SNPs in the lymphotoxin-α gene that are associated with susceptibility to myocardial infarction
    • Ozaki K, Ohnishi Y, Iida A, Sekine A, Yamada R, Tsunoda T, Sato H, Sato H, Hori M, Nakamura Y, Tanaka T: Functional SNPs in the lymphotoxin-α gene that are associated with susceptibility to myocardial infarction. Nat Genet (2002) 32:650-654. One of the largest genome-scans attempted to date in a major complex disease.
    • (2002) Nat Genet , vol.32 , pp. 650-654
    • Ozaki, K.1    Ohnishi, Y.2    Iida, A.3    Sekine, A.4    Yamada, R.5    Tsunoda, T.6    Sato, H.7    Sato, H.8    Hori, M.9    Nakamura, Y.10    Tanaka, T.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.