Characterization of EIAV LTR variability and compartmentalization in various reservoir tissues of long-term inapparent carrier ponies

Virology

Volumn 311, Issue 1, 2003, Pages 169-180

  Reis, Jenner K P ^a   Craigo, Jodi K ^a   Cook, Sheila J ^b   Issel, Charles J ^b   Montelaro, Ronald C ^a  

^a UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

^b UNIVERSITY OF KENTUCKY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; EQUINE INFECTIOUS ANEMIA VIRUS; GENETIC VARIABILITY; HORSE DISEASE; IN VIVO STUDY; INOCULATION; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TANDEM REPEAT; TISSUE DISTRIBUTION; VIRAL GENETICS;

EQUIDAE; EQUINE INFECTIOUS ANEMIA VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0038045773     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0042-6822(03)00168-5     Document Type: Article

References (46)

1. Ait-Khaled M., McLaughlin J.E., Johnson M.A., Emery V.C. Distinct HIV-1 long terminal repeat quasispecies present in nervous tissue compared to that in lung, blood and lymphoid tissues of an AIDS patient. AIDS. 9:1995;675-683.
2. Becquart P., Chomont N., Roques P., Ayouba A., Kazatchkine M.D., Belec L., Hocini H. Compartmentalization of HIV-1 between breast milk and blood of HIV-infected mothers. Virology. 300:2002;109-117.
3. Beerli P., Grassly N.C., Kuhner M.K., Nickle D., Pybus O., Rain M., Rambaut A., Rodrigo A.G., Wang Y. Population genetics of HIV parameter estimation using geneaology-based methods . Rodrigo A.G., Learn A.G. Computational and Evolutionary Analyses of HIV Sequences. 2001;217-252 Kluwer Academic, Boston.
4. Belshan M., Baccam P., Oaks J.L., Sponseller B.A., Murphy S.C., Cornette J., Carpenter S. Genetic and biological variation in equine infectious anemia virus Rev correlates with variable stages of clinical disease in an experimentally infected pony. Virology. 279:2001;185-200.
5. Belshan M., Harris M.E., Shoemaker A.E., Hope T.J., Carpenter S. Biological characterization of Rev variation in equine infectious anemia virus. J. Virol. 72:1998;4421-4426.
6. Carpenter S., Alexandersen S., Long M.J., Perryman S., Chesebro B. Identification of a hypervariable region in the long terminal repeat of equine infectious anemia virus. J. Virol. 65:1991;1605-1610.
7. Carvalho M., Derse D. Physical and functional characterization of transcriptional control elements in the equine infectious anemia virus promoter. J. Virol. 67:1993;2064-2074.
8. Carvalho M., Derse D. The PU.1/Spi-I proto-oncogene is a transcriptional regulator of a lentivirus promoter. J. Virol. 67:1993;3385-3890.
9. Clements J.E., Zink M.C., Narayan O., Gabuzda D. Lentivirus infection of macrophage. Immunol. Ser. 60:1994;589-600.
10. Corboy J.R., Garl P.J. HIV-1 LTR DNA sequence variation in brain-derived isolates. J. Neurovirol. 3:1997;331-341.
11. Craigo J.K., Leroux C.L., Howe L., Steckbeck J.D., Cook S.J., Issel C.J., Montelaro R.C. Transient immune suppression of inapparent carriers infected with a principle neutralizing domain-deficient EIAV induces neutralizing antibodies and lowers steady state viral replication. J. Gen. Virol. 83:2002;1353-1359.
12. Program manual for Wisconsin Package. 1994;Genetics Computer Group, Madison, WI.
13. Gupta P., Leroux C., Patterson B.K., Kingsley L., Rinaldo C., Ding M., Chen Y., Kulka K., Buchanan W., McKeon B., Montelaro R. Human immunodeficiency virus type 1 shedding pattern in semen correlates with the compartmentalization of viral Quasi species between blood and semen. J Infect. Dis. 182:2000;79-87.
14. Hammond S.A., Cook S.J., Lichtenstein D.L., Issel C.J., Montelaro R.C. Maturation of the cellular and humoral immune responses to persistent infection in horses by equine infectious anemia virus is a complex and lengthy process. J. Virol. 71:1997;3840-3852.
15. Hammond S.A., Li F., McKeon B.M. Sr., Cook S.J., Issel C.J., Montelaro R.C. Immune responses and viral replication in long-term inapparent carrier ponies inoculated with equine infectious anemia virus. J. Virol. 74:2000;5968-5981.
16. Harrold S.M., Cook S.J., Cook R.F., Rushlow K.E., Issel C.J., Montelaro R.C. Tissue sites of persistent infection and active replication of equine infectious anemia virus during acute disease and asymptomatic infection in experimentally infected equids. J. Virol. 74:2000;3112-3121.
17. Leroux C., Craigo J.K., Issel C.J., Montelaro R.C. Equine infectious anemia virus genomic evolution in progressor and nonprogressor ponies. J. Virol. 75:2001;4570-4583.
18. Leroux C., Issel C., Montelaro R.C. Novel and dynamic evolution of equine infectious anemia virus genomic quasispecies associated with sequential disease cycles in an experimentally infected pony. J. Virol. 71:1997;9627-9639.
19. Lichtenstein D.L., Craigo J.K., Leroux C., Rushlow K.E., Cook R.F., Cook S.J., Issel C.J., Montelaro R.C. Effects of long terminal repeat sequence variation on equine infectious anemia virus replication in vitro and in vivo. Virology. 263:1999;408-417.
20. Lichtenstein D.L., Issel C.J., Montelaro R.C. Genomic quasispecies associated with the initiation of infection and disease in ponies experimentally infected with equine infectious anemia virus. J. Virol. 70:1996;3346-3354.
21. Madden C.R., Shih D.S. Analysis of the long terminal repeat from a cytopathic strain of equine infectious anemia virus. Virology. 225:1996;395-399.
22. Maddison W.P., Maddison D.R. MacClade Analysis of Phylogeny and Character Evolution . third ed: 1992;Sinauer Associates, Sunderland, MA.
23. Maury W. Monocyte maturation controls expression of equine infectious anemia virus. J. Virol. 68:1994;6270-6279.
24. Maury W., Bradley S., Wright B., Hines R. Cell specificity of the transcription-factor repertoire used by a lentivirus Motifs important for expression of equine infectious anemia virus in nonmonocytic cells . Virology. 267:2000;267-278.
25. Maury W., Oaks J.L., Bradley S. Equine endothelial cells support productive infection of equine infectious anemia virus. J. Virol. 72:1998;9291-9297.
26. Maury W., Perryman S., Oaks J.L., Seid B.K., Crawford T., McGuire T.C., Carpenter S. Localized sequence heterogeneity in the long terminal repeats of in vivo isolates of equine infectious anemia virus. J. Virol. 71:1997;4929-4937.
27. McAllister J.J., Phillips D., Millhouse S., Conner J., Hogan T., Ross H.L., Wigdahl B. Analysis of the HIV-1 LTR NF-kB-proximal Sp site III Evidence for cell type-specific gene regulation and viral replication . Virology. 274:2000;262-277.
28. McGuire T.C., O'Rourke K.I., Perryman L.E. Immunopathogenesis of equine infectious anemia lentivirus disease. Dev. Biol. Stand. 72:1990;31-37.
29. Montelaro R.C., Ball J.M., Rushlow K. Equine retroviruses. Levy J.A. The Retroviridae. 1993;257-360 Plenum, New York.
30. Oaks J.L., McGuire T.C., Ulibarri C., Crawford T. Equine infectious anemia virus is found in tissue macrophage during subclinical infection. J. Virol. 72:1998;7263-7269.
31. Oaks J.L., Ulibarri C., Crawford T.B. Endothelial cell infection in vivo by equine infectious anaemia virus. J Gen. Virol. 80:(Pt. 9):1999;2393-2397.
32. O'Rourke K.I., Besola M.L., McGuire T.C. Proviral sequences detected by polymerase chain reaction in peripheral blood cells of horses with equine infectious anemia lentivirus. Arch. Virol. 117:1991;109-119.
33. Page R.D.W. TREEVIEW An application to display phylogenetic trees on personal computers . Comput. Appl. Biosci. 12:1996;357-358.
34. Payne S.L., La Celle K., Pei X.F., Qi X.M., Shao H., Steagall W.K., Perry S., Fuller F. Long terminal repeat sequences of equine infectious anaemia virus are a major determinant of cell tropism. J. Gen. Virol. 80 (Pt 3):1999;755-759.
35. Payne S.L., Rausch J., Rushlow K., Montelaro R.C., Issel C., Flaherty M., Perry S., Sellon D., Fuller F. Characterization of infectious molecular clones of equine infectious anemia virus. J. Gen. Virol. 75:1994;425-429.
36. Poss M., Rodrigo A.G., Gosink J.J., Learn G.H., de Vange Panteleeff D., Martin H.L. Jr., Bwayo J., Kreiss J.K., Overbaugh J. Evolution of envelope sequences from the genital tract and peripheral blood of women infected with clade A human immunodeficiency virus type I. J. Virol. 72:1998;8240-8251.
37. Rwambo P.M., Issel C.J., Hussain K.A., Montelaro R.C. In vitro isolation of a neutralization escape mutant of equine infectious anemia virus. Arch. Virol. 111:1990;275-280.
38. Sambrook J., Fritsch E.F., Maniatis T. Molecular cloning A laboratory Manual . second ed: 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
39. Sellon D.C., Perry S.T., Coggins L., Fuller F.J. Wild-type equine infectious anemia virus replicates in vivo predominantly in tissue macrophage, not in peripheral blood monocytes. J. Virol. 66:1992;5906-5913.
40. Slatkin M., Maddison W.P. A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics. 123:1989;603-613.
41. Slatkin M., Maddison W.P. Detecting isolation by distance using phylogenies of genes. Genetics. 126:1990;249-260.
42. Smouse P.E., Long J.C., Sokal R.R. Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Syst. Zool. 35:1986;627-632.
43. Waddle D.M. Matrix correlation tests support a single origin for modern humans. Nature. 368:1994;452-454.
44. Zhang L., Rowe L., He T., Chung C., Yu J., Yu W., Talal A., Markowitz M., Ho D.D. Compartmentalization of surface envelope glycoprotein of human immunodeficiency virus type 1 during acute and chronic infection. J. Virol. 76:2002;9465-9473.
45. Zheng Y.H., Sentsui H., Kono Y., Ikuta K. Mutations occurring during serial passage of Japanese equine infectious anemia virus in primary horse macrophage. Virus Res. 68:2000;93-98.
46. Zheng Y.H., Sentsui H., Sugita M., Nakaya T., Kishi M., Hagiwara K., Inoshima Y., Ishihara C., Kono Y., Lu J.L., Ikuta K. Replication ability in vitro and in vivo of equine infectious anemia virus avirulent Japanese strain. Virology. 266:2000;129-139.