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Volumn 26, Issue 2, 2003, Pages 228-235

Candidate division BD: Phylogeny, distribution and abundance in soil ecosystems

Author keywords

Candidate division BD; Candidate division KS B; Gemmimonas; Phylogenetic analysis; Quantitative PCR

Indexed keywords

RIBOSOME DNA;

EID: 0038005024     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/072320203322346074     Document Type: Article
Times cited : (14)

References (22)
  • 2
    • 0034051181 scopus 로고    scopus 로고
    • Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantification
    • Crocetti, G. R., Hugenholtz, P., Bond, P. L., Schuler, A., Keller, J., Jenkins, D., Blackall, L. L.: Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantification. Appl. Env. Microbiol. 66, 1175-1182 (2000).
    • (2000) Appl. Env. Microbiol. , vol.66 , pp. 1175-1182
    • Crocetti, G.R.1    Hugenholtz, P.2    Bond, P.L.3    Schuler, A.4    Keller, J.5    Jenkins, D.6    Blackall, L.L.7
  • 3
    • 0035068917 scopus 로고    scopus 로고
    • A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data
    • Dalevi, D., Hugenholtz, P., Blackall, L. L.: A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data. Int. J. Syst. Evol. Microbiol. 51, 385-391 (2001).
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 385-391
    • Dalevi, D.1    Hugenholtz, P.2    Blackall, L.L.3
  • 4
    • 0034069650 scopus 로고    scopus 로고
    • Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria
    • Dojka, M. A., Harris, J. K., Pace, N. R.: Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl. Env. Microbiol. 66, 1617-1621 (2000).
    • (2000) Appl. Env. Microbiol. , vol.66 , pp. 1617-1621
    • Dojka, M.A.1    Harris, J.K.2    Pace, N.R.3
  • 5
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376 (1981).
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 6
    • 0036195306 scopus 로고    scopus 로고
    • Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus
    • Furlong, M. A., Singleton, D. R., Coleman, D. C., Whitman, W. B.: Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Appl. Environ. Microbiol. 68, 1265-1279 (2002).
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1265-1279
    • Furlong, M.A.1    Singleton, D.R.2    Coleman, D.C.3    Whitman, W.B.4
  • 7
    • 0029834661 scopus 로고    scopus 로고
    • Inferring complex phylogenies
    • Hillis, D. M.: Inferring complex phylogenies. Nature 383, 130-131 (1996).
    • (1996) Nature , vol.383 , pp. 130-131
    • Hillis, D.M.1
  • 8
    • 0029793346 scopus 로고    scopus 로고
    • Developmentally regulated synthesis of an unusually small, basic peptide by Coxiella burnetii
    • Heinzen, R. A., Howe, D., Mallavia, L. P., Rockey, D. D., Hackstadt, T.: Developmentally regulated synthesis of an unusually small, basic peptide by Coxiella burnetii. Mol. Microbiol. 22, 9-19 (1996).
    • (1996) Mol. Microbiol. , vol.22 , pp. 9-19
    • Heinzen, R.A.1    Howe, D.2    Mallavia, L.P.3    Rockey, D.D.4    Hackstadt, T.5
  • 9
    • 0033848736 scopus 로고    scopus 로고
    • Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian and soils
    • Holmes, A. J., Bowyer, J., Holley, M. P., O'Donoghue, M., Montgomery, M., Gillings, M. R.: Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian and soils. FEMS Microbiol. Ecol. 33, 111-120 (2000).
    • (2000) FEMS Microbiol. Ecol. , vol.33 , pp. 111-120
    • Holmes, A.J.1    Bowyer, J.2    Holley, M.P.3    O'Donoghue, M.4    Montgomery, M.5    Gillings, M.R.6
  • 11
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz, P. G., Goebel, B. M., Pace, N. R.: Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 150, 4765-4774 (1998).
    • (1998) J. Bacteriol. , vol.150 , pp. 4765-4774
    • Hugenholtz, P.G.1    Goebel, B.M.2    Pace, N.R.3
  • 12
    • 0035163571 scopus 로고    scopus 로고
    • Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives
    • Hugenholtz, P., Tyson, G. W., Webb, R. I., Wagner, A. M., Blackall, L.L.: Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Appl. Envir. Microbiol. 67, 411-419 (2001).
    • (2001) Appl. Envir. Microbiol. , vol.67 , pp. 411-419
    • Hugenholtz, P.1    Tyson, G.W.2    Webb, R.I.3    Wagner, A.M.4    Blackall, L.L.5
  • 14
    • 0028082207 scopus 로고
    • Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
    • Kopczynski, E. D., Bateson, M. M., Ward, D. M.: Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Envir. Microbiol. 60, 746-748 (1994).
    • (1994) Appl. Envir. Microbiol. , vol.60 , pp. 746-748
    • Kopczynski, E.D.1    Bateson, M.M.2    Ward, D.M.3
  • 15
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • (E. Stackebrandt, M. Goodfellow, eds.), John Wiley and Sons, New York, N.Y.
    • Lane, D. J.: 16S/23S rRNA sequencing, pp. 115-175. In: Nucleic acid techniques in bacterial systematics (E. Stackebrandt, M. Goodfellow, eds.), John Wiley and Sons, New York, N.Y. 1991.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 16
    • 0032990367 scopus 로고    scopus 로고
    • Bacterial diversity in deep-sea sediments from different depths
    • Li, L., Kato, C., Horikoshi, K.: Bacterial diversity in deep-sea sediments from different depths. Biodiversity and Conservation 8, 659-677 (1999).
    • (1999) Biodiversity and Conservation , vol.8 , pp. 659-677
    • Li, L.1    Kato, C.2    Horikoshi, K.3
  • 18
    • 0035216085 scopus 로고    scopus 로고
    • High prokaryote diversity and analysis of community structure in mobile mud deposits of French Guiana: Identification of two new bacterial candidate divisions
    • Madrid, V. M., Aller, J. Y., Aller, R. C., Chistoserdov, A. Y.: High prokaryote diversity and analysis of community structure in mobile mud deposits of French Guiana: identification of two new bacterial candidate divisions. FEMS Microbio. Ecol. 37, 197-209 (2001).
    • (2001) FEMS Microbio. Ecol. , vol.37 , pp. 197-209
    • Madrid, V.M.1    Aller, J.Y.2    Aller, R.C.3    Chistoserdov, A.Y.4
  • 19
    • 0036861572 scopus 로고    scopus 로고
    • Soil microbiological properties 20 years after surface mine reclamation: Spatial analysis of reclaimed and undisturbed sites
    • Mummey, D. L., Stahl, P. D., Buyer, J. S.: Soil microbiological properties 20 years after surface mine reclamation: spatial analysis of reclaimed and undisturbed sites. Soil Biol. Biochem. 34, 1711-1719 (2002).
    • (2002) Soil Biol. Biochem. , vol.34 , pp. 1711-1719
    • Mummey, D.L.1    Stahl, P.D.2    Buyer, J.S.3
  • 20
    • 0034869048 scopus 로고    scopus 로고
    • Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil
    • Nunan, N., Ritz, K., Crabb, D., Harris, K., Wu, K., Crawford, J. W., Young, I. M.: Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil. FEMS Microbiol. Ecol. 36, 67-77 (2001).
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 67-77
    • Nunan, N.1    Ritz, K.2    Crabb, D.3    Harris, K.4    Wu, K.5    Crawford, J.W.6    Young, I.M.7
  • 21
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic Inference
    • (D. Hillis, C. Moritz, B. Mable, eds.), Sinauer Associates, Sunderland, Mass.
    • Swofford, D. L., Olsen, G. J., Waddell, P. J., Hillis, D. M.: Phylogenetic Inference, p. 407-514. In: Molecular Systematics (D. Hillis, C. Moritz, B. Mable, eds.), Sinauer Associates, Sunderland, Mass. 1999.
    • (1999) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 22
    • 0030748867 scopus 로고    scopus 로고
    • Inhibition and facilitation of nucleic acid amplification
    • Wilson, I. G.: Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63, 3741-3751 (1997).
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3741-3751
    • Wilson, I.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.