-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., Lipman. D. J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 24, 3389-3402 (1997).
-
(1997)
Nucleic Acids Res.
, vol.24
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0034051181
-
Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantification
-
Crocetti, G. R., Hugenholtz, P., Bond, P. L., Schuler, A., Keller, J., Jenkins, D., Blackall, L. L.: Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantification. Appl. Env. Microbiol. 66, 1175-1182 (2000).
-
(2000)
Appl. Env. Microbiol.
, vol.66
, pp. 1175-1182
-
-
Crocetti, G.R.1
Hugenholtz, P.2
Bond, P.L.3
Schuler, A.4
Keller, J.5
Jenkins, D.6
Blackall, L.L.7
-
3
-
-
0035068917
-
A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data
-
Dalevi, D., Hugenholtz, P., Blackall, L. L.: A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data. Int. J. Syst. Evol. Microbiol. 51, 385-391 (2001).
-
(2001)
Int. J. Syst. Evol. Microbiol.
, vol.51
, pp. 385-391
-
-
Dalevi, D.1
Hugenholtz, P.2
Blackall, L.L.3
-
4
-
-
0034069650
-
Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria
-
Dojka, M. A., Harris, J. K., Pace, N. R.: Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl. Env. Microbiol. 66, 1617-1621 (2000).
-
(2000)
Appl. Env. Microbiol.
, vol.66
, pp. 1617-1621
-
-
Dojka, M.A.1
Harris, J.K.2
Pace, N.R.3
-
5
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376 (1981).
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
6
-
-
0036195306
-
Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus
-
Furlong, M. A., Singleton, D. R., Coleman, D. C., Whitman, W. B.: Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Appl. Environ. Microbiol. 68, 1265-1279 (2002).
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1265-1279
-
-
Furlong, M.A.1
Singleton, D.R.2
Coleman, D.C.3
Whitman, W.B.4
-
7
-
-
0029834661
-
Inferring complex phylogenies
-
Hillis, D. M.: Inferring complex phylogenies. Nature 383, 130-131 (1996).
-
(1996)
Nature
, vol.383
, pp. 130-131
-
-
Hillis, D.M.1
-
8
-
-
0029793346
-
Developmentally regulated synthesis of an unusually small, basic peptide by Coxiella burnetii
-
Heinzen, R. A., Howe, D., Mallavia, L. P., Rockey, D. D., Hackstadt, T.: Developmentally regulated synthesis of an unusually small, basic peptide by Coxiella burnetii. Mol. Microbiol. 22, 9-19 (1996).
-
(1996)
Mol. Microbiol.
, vol.22
, pp. 9-19
-
-
Heinzen, R.A.1
Howe, D.2
Mallavia, L.P.3
Rockey, D.D.4
Hackstadt, T.5
-
9
-
-
0033848736
-
Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian and soils
-
Holmes, A. J., Bowyer, J., Holley, M. P., O'Donoghue, M., Montgomery, M., Gillings, M. R.: Diverse, yet-to-be-cultured members of the Rubrobacter subdivision of the Actinobacteria are widespread in Australian and soils. FEMS Microbiol. Ecol. 33, 111-120 (2000).
-
(2000)
FEMS Microbiol. Ecol.
, vol.33
, pp. 111-120
-
-
Holmes, A.J.1
Bowyer, J.2
Holley, M.P.3
O'Donoghue, M.4
Montgomery, M.5
Gillings, M.R.6
-
10
-
-
0035208453
-
Phylogenetic structure of unusual aquatic microbial formations in Nullarbor caves, Australia
-
Holmes, A. J., Tujula, N. A., Holley, M., Contos, A., James, J. M., Rogers, P., Gillings, M. R.: Phylogenetic structure of unusual aquatic microbial formations in Nullarbor caves, Australia. Environ. Microbiol. 3, 256-264 (2001).
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 256-264
-
-
Holmes, A.J.1
Tujula, N.A.2
Holley, M.3
Contos, A.4
James, J.M.5
Rogers, P.6
Gillings, M.R.7
-
11
-
-
0031662188
-
Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
-
Hugenholtz, P. G., Goebel, B. M., Pace, N. R.: Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J. Bacteriol. 150, 4765-4774 (1998).
-
(1998)
J. Bacteriol.
, vol.150
, pp. 4765-4774
-
-
Hugenholtz, P.G.1
Goebel, B.M.2
Pace, N.R.3
-
12
-
-
0035163571
-
Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives
-
Hugenholtz, P., Tyson, G. W., Webb, R. I., Wagner, A. M., Blackall, L.L.: Investigation of candidate division TM7, a recently recognized major lineage of the domain Bacteria with no known pure-culture representatives. Appl. Envir. Microbiol. 67, 411-419 (2001).
-
(2001)
Appl. Envir. Microbiol.
, vol.67
, pp. 411-419
-
-
Hugenholtz, P.1
Tyson, G.W.2
Webb, R.I.3
Wagner, A.M.4
Blackall, L.L.5
-
13
-
-
0035173421
-
rrndb: The ribosomal RNA operon copy number database
-
Klappenbach, J. A., Saxman, P. R., Cole, J. R., Schmidt, T. M.: rrndb: the ribosomal RNA operon copy number database. Nucleic Acids Res. 29, 181-184 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 181-184
-
-
Klappenbach, J.A.1
Saxman, P.R.2
Cole, J.R.3
Schmidt, T.M.4
-
14
-
-
0028082207
-
Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms
-
Kopczynski, E. D., Bateson, M. M., Ward, D. M.: Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms. Appl. Envir. Microbiol. 60, 746-748 (1994).
-
(1994)
Appl. Envir. Microbiol.
, vol.60
, pp. 746-748
-
-
Kopczynski, E.D.1
Bateson, M.M.2
Ward, D.M.3
-
15
-
-
0001857117
-
16S/23S rRNA sequencing
-
(E. Stackebrandt, M. Goodfellow, eds.), John Wiley and Sons, New York, N.Y.
-
Lane, D. J.: 16S/23S rRNA sequencing, pp. 115-175. In: Nucleic acid techniques in bacterial systematics (E. Stackebrandt, M. Goodfellow, eds.), John Wiley and Sons, New York, N.Y. 1991.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
16
-
-
0032990367
-
Bacterial diversity in deep-sea sediments from different depths
-
Li, L., Kato, C., Horikoshi, K.: Bacterial diversity in deep-sea sediments from different depths. Biodiversity and Conservation 8, 659-677 (1999).
-
(1999)
Biodiversity and Conservation
, vol.8
, pp. 659-677
-
-
Li, L.1
Kato, C.2
Horikoshi, K.3
-
17
-
-
0035175274
-
The RDP-II (Ribosomal Database Project)
-
Maidak, B. L., Cole, J. R., Lilburn, T. G., Parker, C. T. Jr., Saxman P. R., Farris, R. J., Garrity, G. M., Olsen, G. J., Schmidt, T. M., Tiedje, J. M.: The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29, 173-174 (2001)
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 173-174
-
-
Maidak, B.L.1
Cole, J.R.2
Lilburn, T.G.3
Parker C.T., Jr.4
Saxman, P.R.5
Farris, R.J.6
Garrity, G.M.7
Olsen, G.J.8
Schmidt, T.M.9
Tiedje, J.M.10
-
18
-
-
0035216085
-
High prokaryote diversity and analysis of community structure in mobile mud deposits of French Guiana: Identification of two new bacterial candidate divisions
-
Madrid, V. M., Aller, J. Y., Aller, R. C., Chistoserdov, A. Y.: High prokaryote diversity and analysis of community structure in mobile mud deposits of French Guiana: identification of two new bacterial candidate divisions. FEMS Microbio. Ecol. 37, 197-209 (2001).
-
(2001)
FEMS Microbio. Ecol.
, vol.37
, pp. 197-209
-
-
Madrid, V.M.1
Aller, J.Y.2
Aller, R.C.3
Chistoserdov, A.Y.4
-
19
-
-
0036861572
-
Soil microbiological properties 20 years after surface mine reclamation: Spatial analysis of reclaimed and undisturbed sites
-
Mummey, D. L., Stahl, P. D., Buyer, J. S.: Soil microbiological properties 20 years after surface mine reclamation: spatial analysis of reclaimed and undisturbed sites. Soil Biol. Biochem. 34, 1711-1719 (2002).
-
(2002)
Soil Biol. Biochem.
, vol.34
, pp. 1711-1719
-
-
Mummey, D.L.1
Stahl, P.D.2
Buyer, J.S.3
-
20
-
-
0034869048
-
Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil
-
Nunan, N., Ritz, K., Crabb, D., Harris, K., Wu, K., Crawford, J. W., Young, I. M.: Quantification of the in situ distribution of soil bacteria by large-scale imaging of thin sections of undisturbed soil. FEMS Microbiol. Ecol. 36, 67-77 (2001).
-
(2001)
FEMS Microbiol. Ecol.
, vol.36
, pp. 67-77
-
-
Nunan, N.1
Ritz, K.2
Crabb, D.3
Harris, K.4
Wu, K.5
Crawford, J.W.6
Young, I.M.7
-
21
-
-
0001336205
-
Phylogenetic Inference
-
(D. Hillis, C. Moritz, B. Mable, eds.), Sinauer Associates, Sunderland, Mass.
-
Swofford, D. L., Olsen, G. J., Waddell, P. J., Hillis, D. M.: Phylogenetic Inference, p. 407-514. In: Molecular Systematics (D. Hillis, C. Moritz, B. Mable, eds.), Sinauer Associates, Sunderland, Mass. 1999.
-
(1999)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
22
-
-
0030748867
-
Inhibition and facilitation of nucleic acid amplification
-
Wilson, I. G.: Inhibition and facilitation of nucleic acid amplification. Appl. Environ. Microbiol. 63, 3741-3751 (1997).
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 3741-3751
-
-
Wilson, I.G.1
|