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The authors are grateful to Dr. G. Vriend (EMBL, Heidelberg, Germany) for providing the data of tripeptide fragments.
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note
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The following small molecule ligands have been used (labeled by their Refcodes in the PDB):1cbx, 1dhf, 1dwc, 1dwd, 1dwe, 1eed, 1ent, 1gpy, 1hiv, 1hos, 1ivp, 1ivq, 1pph, 1stp, 1thl, 1tlp, 1tmn, 1tpp, 2er7, 2hat, 2mip, 2r04, 2r06, 2r07, 2rm2, 2rr1, 2rs1, 2rs3, 2rs5, 2tmn, 3cpa, 3gpb, 3tmn, 4dfr, 4er1, 4er2, 4gpb, 4hvp, 4phv, 4tapap, 4tln, 4tmn, 5er1, 5er2, 5gpb, 5hvp, 5tln, 5tmn, 6cpa, 7cpa, 7hvp, 8cpa, 8hvp, 9hvp, lysozyme: α-, β- N-acetylglucosamide, thermolysin: β-ppp, cbzphe, thiorphan, retro-thiorphan.
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note
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The following subset of ligands from [15] has been used: 1cbx, 1dhf, 1dwd, 1dwe, 1gpy, 1pph, 1stp, 1thl, 1tlp, 1tmn, 2tmn, 3cpa, 3gpb, 3tmn, 4dfr, 4tln, 4tmn, 4-tapap, 5gpb, 5tln, 5tmn, 6cpa, 7cpa, 8cpa, β-ppp, cbzphe, thiorphan, retro-thiorphan.
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