A phylogenetic analysis of large-subunit (26S) ribosome DNA sequences suggests that the Corsiaceae are polyphyletic

New Zealand Journal of Botany

Volumn 41, Issue 1, 2003, Pages 1-11

  Neyland, Ray ^a   Hennigan, Melissa ^a  

^a MCNEESE STATE UNIVERSITY   (United States)

Author keywords

Arachnitis; Burmanniales; Corsia; Corsiopsis; Monocot systematics

Indexed keywords

PHYLOGENETICS;

ARACHNITIS; BURMANNIACEAE; CORSIA; CORSIACEAE; CORSIOPSIS; DIOSCOREALES; EMBRYOPHYTA; LILIIFLORAE; THISMIA;

EID: 0037898302     PISSN: 0028825X     EISSN: 11758643     Source Type: Journal    
DOI: 10.1080/0028825X.2003.9512828     Document Type: Article

References (54)

1. Angiosperm Phylogeny Group. 1998. An ordinal classification for the families of flowering plants. Annals of the Missouri Botanical Garden, 85:531–553.
2. Beccari, O., 1878. Malesia I, Genova:Instituto Sordo-Muti.
3. Bentham, G., 1883. “Ordo Burmanniaceae”. In Genera Plantarum, Edited by:Bentham, G., and Hooker, J. D., Volume 3, 455–560. London:Reeve & Co.
4. Caddick, L. R., Rudall, P. J., Wilkin, P., and Chase, M. W., 2000. “Yams and their allies; systematics of Dioscoreales”. In Monocots:systematics and evolution, Edited by:Wilson, K. L., and Morrison, D. A., 475–487. Collingwood, Victoria, Australia:CSIRO Publishing.
5. Chase, M. W., Stevenson, D. W., Wilkin, P., and Rudall, P. J., 1995a. “Monocot sytematics:a combined analysis”. In Monocotyledons:Systematics and evolution, Edited by:Rudall, P. J., Cribb, P. J., Cutler, D. F., and Humphries, C. J., 685–730. Kew:Royal Botanic Garden.
6. Chase, M. W., Duvall, M. R., Hills, H. G., Conran, J. G., Cox, A. V., Eguiarte, L. E., Hartwell, J., Fay, M. F., Caddick, L. R., Cameron, K. M., and Hoot, S., 1995b. “Molecular phylogenetics of Lilianae”. In Monocotyledons:systematics and evolution, Edited by:Rudall, P. J., Cribb, P. J., Cutler, D. F., and Humphries, C. J., 109–137. Kew:Royal Botanic Garden.
7. Chase, M. W., Soltis, D. E., Soltis, P. S., Rudall, P. J., Fay, M. F., Hahn, W. H., Sullivan, S., Joseph, J., Molvray, M., Kores, P. J., Givnish, T. J., Sytsma, K. J., and Pires, J. C., 2000. “Higher-level systematics of the monocotyledons:an assessment of current knowledge and a new classification”. In Monocots:systematics and evolution, Edited by:Wilson, K. L., and Morrison, D. A., 3–16. Collingwood, Victoria, Australia:CSIRO Publishing.
8. Cribb, P. J., Wilkin, P., and Clements, M., 1995. Corsiaceae:a new family for the Falkland Islands. Kew Bulletin, 50:171–172.
9. Cronquist, A., 1981. An integrated system of classification of flowering plants, New York:Columbia University Press.
10. Dahlgren, R. M. T., and Clifford, H. T., 1982. The monocotyledons:a comparative study, London:Academic Press.
11. Dahlgren, R. M. T., Clifford, H. T., and Yeo, P. F., 1985. The families of the monocotyledons:structure, evolution and taxonomy, Berlin:Springer-Verlag.
12. dePamphilis, C. W., 1995. “Genes and genomes”. In Parasitic plants, Edited by:Press, M. C., and Graves, J. D., 177–205. London:Chapman and Hall.
13. Dimitri, M. J., 1972. Una nueva del genero Arachnitis phil. (Corsiaceae). Revista de la Facultad de Agronomía, 48:37–45.
14. Doyle, J. J., and Doyle, J. L., 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, 19:11–15.
15. Duvall, M. R., Clegg, M. T., Chase, M. W., Clark, W. D., Kress, W. J., Hills, H. G., Eguiarte, L. E., Smith, J. F., Gaut, B. S., Zimmer, E. A., and Learn, G. H., Jr. 1993. Phylogenetic hypotheses or monocotyledons constructed from rbcL sequence data. Annals of the Missouri Botanical Garden, 80:607–617.
16. Engler, A., 1888. “Burmanniaceae”. In Die natürlichen Pflanzenfamilien 2(6) Edited by:Engler, A., and Prantl, K., 44–51. Leipzig
17. Erdtman, G., 1952. Pollen morphology and plant taxonomy, Stockholm:Almqvist & Wiksells.
18. Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology, 27:401–410.
19. Felsenstein, J., 1985. Confidence limits on phylogenies:an approach using the bootstrap. Evolution, 39:783–791.
20. Fenzl, E., 1865. Bermerkungen zu Professor Philippi's Aufsatze. Zoologisch-Botanische Gellschaft in Wien, 15:523–534.
21. Hutchinson, J., 1934. The families of flowering plants. Monocotyledons, Oxford:Clarendon Press.
22. Hutchinson, J., 1959. The families of flowering plants. Monocotyledons, 2nd, Oxford:Clarendon Press.
23. Ibisch, P. L., Neinhuis, C., and Rojas, P., 1996. On the biology, biogeography, and taxonomy of Arachnitis Phil. nom. cons. (Corsiaceae) in respect to a new record from Bolivia. Wildenowia, 26:321–332.
24. Jonker, F. P., 1938. A monograph of the Burmanniaceae. Mededeelingen van het botanisch Museum en Herbarium ran de Rijks Universiteit te Utrecht, 51:1–279.
25. Kores, P., White, D. A., and Thien, L. B., 1978. Chromosomes of Corsia (Corsiaceae). American Journal of Botany, 65:584–585.
26. Kuzoff, R. K., Sweere, J. A., Soltis, D. E., Soltis, P. S., and Zimmer, E. A., 1998. The phylogenetic potential of entire 26S rDNA sequences in plants. Molecular Biology and Evolution, 15:251–263.
27. Larsen, K., 1963. Studies in the flora of Thailand. 14. Cytological studies in the vascular plants of Thailand. Dansk botanisk Arkiv udgiret af Dansk botanisk Forening, 20:211–275.
28. Maas, P. J. M., Maas-van de Kamer, H., van Benthem, J., Snelders, H. C. M., and Rübsamen, T., 1986. Monograph 42, Burmanniaceae. Flora Neotropica, New York:New York Botanical Garden.
29. Maddison, W. P., and Maddison, D. R., 1992. MacClade:Analysis of phylogeny and character evolution. Version 3.0, Sunderland, MA:Sinauer.
30. Molvray, M., Kores, P. J., and Chase, M. W., 2000. “Polyphyly of mycoheterotrophic orchids and functional influences on floral and molecular characters”. In Monocots:systematics and evolution, Edited by:Wilson, K. L., and Morrison, D. A., 441–448. Collingwood, Victoria, Australia:CSIRO Publishing.
31. Mullis, K. B., and Faloona, F. A., 1987. Specific synthesis of DNA in vitro via polymerase chain reaction. Methods in Enzymology, 155:335–350.
32. Muñoz, C., 1966. Sinopsis de la flora Chilena, Santiago de Chile:Universidad de Chile.
33. Neyland, R., 2001. A phylogeny inferred from large ribosomal subunit 26S rRNA gene sequences suggests that Cuscuta is a derived member of Convolvulaceae. Brittonia, 53:108–115.
34. Neyland, R., 2002. A phylogeny inferred from large ribosomal subunit 26S rDNA gene sequences suggests that Burmanniales are polyphyletic. Australian Systematic Botany, 15:1–10.
35. Nickrent, D. L., and Duff, R. J., 1996. “Molecular studies of parasitic plants using ribosomal RNA”. In Advances in plant research, Edited by:Moreno, M. T., Cubero, J. I., Berner, D., Joel, D., Musselman, L. J., and Parker, C., 28–52. Cordoba, Spain:Junta de Andalucia, Dirección General de Investigación Agraria.
36. Nickrent, D. L., and Soltis, D. E., 1995. A comparison of angiosperm phylogenies from nuclear18S rDNA and rbcL sequences. Annals of the Missouri Botanical Garden, 82:208–234.
37. Nickrent, D. L., and Starr, E. M., 1994. High rates of nucleotide substitution in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants. Journal of Molecular Evolution, 39:62–70.
38. Nickrent, D. L., Duff, R. J., Colwell, A. E., Wolfe, A. D., Young, N. D., Steiner, K. E., and dePamphilis, C. W., 1998. “Molecular phylogenetic and evolutionary studies of parasitic plants”. In Molecular systematics of plants II:DNA sequencing, Edited by:Soltis, D. E., Soltis, P. E., and Doyle, J. J., 211–241. Boston:Kluwer.
39. Philippi, R. A., 1864. Zwei neue Pflanzen aus Chile. Botanische Zeitung, 22:217
40. Phillipi, R. A., 1865. Descripcion de algunas plantas nuevas chilenas, 638–650. Anales de la Universidad de Chile 1865.
41. Raul, W., Barthlott, W., and Ehler, N., 1975. Morphologie und Funktion der Testa staubförmiger Flugsamen. Botanische Jahrbücher für Systematik, 96:353–374.
42. Rübsamen, T., 1986. Morphologische, Embryologische und Systematische Untersuchungen an Burmanniaceae und Corsiaceae mit Ausblick auf die Orchidaceae-Apostasioideae, Berlin:J. Cramer. Dissertationes Botanicae, Band 92.
43. Rudall, P. J., and Eastman, A., 2002. The questionable affinities of Corsia (Corsiaceae):evidence from floral anatomy and pollen morphology. Botanical Journal of the Linnean Society, 138:315–324.
44. Rudall, P. J., Stobart, K. L., Hong, W.-P., Conran, J. G., Furness, C. A., Kite, G. C., and Chase, M. W., 2000. “Consider the lilies:systematics of Liliales”. In Monocots:systematics and evolution, Edited by:Wilson, K. L., and Morrison, D. A., 347–357. Collingwood, Victoria, Australia:CSIRO Publishing.
45. Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Huiguchi, S. J., Horn, R., Mullis, K. B., and Erlich, H. A., 1988. Primer-directed enzymatic amplification of DNA with thermostable DNA polymerase. Science, 239:487–491.
46. Sanderson, M. J., 1989. Confidence limits on phylogenies. Cladistics, 5:113–129.
47. Stevenson, D. W., and Loconte, H., 1995. “Cladistic analysis of monocot families”. In Monocotyledons:systematics and evolution, Edited by:Rudall, P. J., Cribb, P. J., Cutler, D. F., and Humphries, C. J., 543–578. Kew:Royal Botanic Garden.
48. Sugiura, M., Iida, Y., Oono, K., and Takaiwa, F., 1985. The complete nucleotide sequence of rice 25S rRNA gene. Gene, 37:255–259.
49. Swofford, D. L., 2002. PAUP:Phylogenetic Analysis Using Parsimony. Version 4.0b10, Sunderland, Massachusetts:Sinauer Associates.
50. Swofford, D. L., and Beagle, D. P., 1993. Phylogenetic Analysis Using Parsimony, Champaign, IL.:Illinois Natural History Survey.
51. Takhtajan, A., 1997. Diversity and classification of flowering plants, New York:Columbia University Press.
52. Thompson, J. D., Higgins, D. G., and Gibson, T. J., 1994. Clustal W:improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673–4680.
53. van Royen, P., 1972. Corsiaceae of New Guinea and surrounding areas. Webbia, 27:223–255.
54. Zhang, D., Saunders, R. M. K., and Hu, C.-M., 1999. Corsiopsis chinensis gen. et sp. nov. (Corsiaceae):first record of the family in Asia. Systematic Botany, 24:311–314.