Conserved eukaryotic histone-fold residues substituted into an archaeal histone increase DNA affinity but reduce complex flexibility

Journal of Bacteriology

Volumn 185, Issue 11, 2003, Pages 3453-3457

  Soares, Divya J ^b   Marc, Frédéric ^c   Reeve, John N ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b Deptartment of Biochemistry   (United States)

^c ProtNeteomix   (France)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE;

ALTERNATIVE RNA SPLICING; AMINO ACID SUBSTITUTION; ARTICLE; COMPLEX FORMATION; DNA HELIX; EUKARYOTE; GENETIC CONSERVATION; NONHUMAN; NUCLEOSOME; POLYMERIZATION; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN FAMILY; RESIDUE ANALYSIS;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; CONSERVED SEQUENCE; DNA, CIRCULAR; EUKARYOTIC CELLS; HISTONES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEOSOMES; PROTEIN FOLDING;

ACTINOBACTERIA (CLASS); ARCHAEA; EUKARYOTA; UNCULTURED ACTINOMYCETE;

EID: 0037853298     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.185.11.3453-3457.2003     Document Type: Article

References (20)

1. Arents, G., and E. N. Moudrianakis. 1995. The histone fold: a ubiquitous architectural motif utilized in DNA compaction and protein dimerization. Proc. Natl. Acad. Sci. USA 92:11170-11174.
2. Bailey, K. A., C. Chow, and J. N. Reeve. 1999. Histone stoichiometry and DNA circularization in archaeal nucleosomes. Nucleic Acids Res. 27:532-536.
3. Bailey, K. A., S. L. Pereira., J. Widom, and J. N. Reeve. 2000. Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution. J. Mol. Biol. 303:25-34.
4. Bailey, K. A., F. Marc, K. Sandman, and J. N. Reeve. 2002. Both DNA and histone fold sequences contribute to archaeal nucleosome stability. J. Biol. Chem. 277:9293-9301.
5. Bell, S. D., C. H. Botting, B. N. Wardleworth, S. P. Jackson, and M. F. White. 2002. The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation. Science 296:148-151.
6. Decanniere, K., A. M. Babu, K. Sandman, J. N. Reeve, and U. Heinemann. 2000. Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus. J. Mol. Biol. 303:35-47.
7. Luger, K., A. W. Mäder, R. K. Richmond, D. F. Sargent, and T. J. Richmond. 1997. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389:251-260.
8. Luger, K., and T. J. Richmond. 1998. DNA binding within the nucleosome core. Curr. Opin. Struct. Biol. 8:33-40.
9. Marc, F., K. Sandman, R. Lurz, and J. N. Reeve. 2002. Archaeal histone tetramerization determines DNA affinity and the direction of DNA supercoiling. J. Biol. Chem. 277:30879-30886.
10. Musgrave, D. R., K. M. Sandman, and J. N. Reeve. 1991. DNA binding by the archaeal histone HMf results in positive supercoiling. Proc. Natl. Acad. Sci. USA 88:10397-10401.
11. Musgrave, D. R., P. Forterre, and A. Slesarev. 2000. Negative constrained DNA supercoiling in archaeal nucleosomes. Mol. Microbiol. 35:341-349.
12. Narliker, G. J., H.-Y. Fan, and R. E. Kingston. 2002. Cooperation between complexes that regulate chromatin structure and transcription. Cell 108:475-487.
13. Pereira, S. L., and J. N. Reeve. 1999. Archaeal nucleosome positioning sequence from Methanothermus fervidus. J. Mol. Biol. 289:675-681.
14. Reeve, J. N. 2003. Archaeal chromatin and transcription. Mol. Microbiol. 48:587-598.
15. Sandman, K., K. Bailey, S. L. Pereira, D. Soares, W.-T. Li, and J. N. Reeve. 2001. Archaeal histones and nucleosomes. Methods Enzymol. 334:116-129.
16. Sandman, K., and J. N. Reeve. 2001. Chromosome packaging by archaeal histones. Adv. Appl. Microbiol. 50:75-99.
17. Smith, D. R., L. A. Doucette-Stamm, C. DeLoughery, H. Lee, J. Dubois, T. Aldredge, R. Bashirzadeh, D. Blakely, R. Cook, K. Gilbert, D. Harrison, L. Hoang, P. Keagle, W. Lumm, B. Pothier, D. Qiu, R. Spadafora, R. Vicaire, Y. Wang, J. Wierzbowski, R. Gibson, N. Jiwani, A. Caruso, D. Bush, H. Safer, D. Patwell, S. Prabhakar, S. McDougall, G. Shimer, A. Goyal, S. Pietrokovski, G. Church, C. J. Daniels, J. Mao, P. Rice, J. Nölling, and J. N. Reeve. 1997. The complete genome sequence of Methanobacterium thermoautotrophicum strain ΔH: functional analysis and comparative genomics. J. Bacteriol. 179:7135-7155.
18. Soares, D. J., K. Sandman, and J. N. Reeve. 2000. Mutational analysis of archaeal histone-DNA interactions. J. Mol. Biol. 297:39-47.
19. Strahl, B. D., and C. D. Allis. 2000. The language of covalent histone modifications. Nature 403:41-45.
20. Wardleworth, B. N., R. J. Russell, S. D. Bell, G. L. Taylor, and M. F. White. 2002. Structure of Alba: an archaeal chromatin protein modulated by acetylation. EMBO J. 21:4654-4662.