메뉴 건너뛰기




Volumn 69, Issue 7, 2003, Pages 4332-4336

Molecular phylogenetic exploration of bacterial diversity in a Bakreshwar (India) hot spring and culture of Shewanella-related thermophiles

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; DNA; IRON; MICROORGANISMS;

EID: 0037816286     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.7.4332-4336.2003     Document Type: Article
Times cited : (57)

References (30)
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann, R. I., W. Ludwig, and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 3
    • 0028343555 scopus 로고
    • Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment
    • Barns, S. M., R. E. Fundyga, M. W. Jeffries, and N. R. Pace. 1994. Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment. Proc. Natl. Acad. Sci. USA 91:1609-1613.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1609-1613
    • Barns, S.M.1    Fundyga, R.E.2    Jeffries, M.W.3    Pace, N.R.4
  • 4
    • 0031754775 scopus 로고    scopus 로고
    • Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction
    • Beliaev, A. S., and D. A. Saffarini. 1998. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J. Bacteriol. 180:6292-6297.
    • (1998) J. Bacteriol. , vol.180 , pp. 6292-6297
    • Beliaev, A.S.1    Saffarini, D.A.2
  • 5
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius, J., J. L. Palmer, J. P. Kennedy, and H. F. Noller. 1978. Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc. Natl. Acad. Sci. USA 75:4801-4805.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, J.L.2    Kennedy, J.P.3    Noller, H.F.4
  • 7
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 0034009397 scopus 로고    scopus 로고
    • Reduction of Fe(III), Mn(IV), and toxic metals at 100°C by Pyrobaculum islandicum
    • Kashefi, K., and D. R. Lovley. 2000. Reduction of Fe(III), Mn(IV), and toxic metals at 100°C by Pyrobaculum islandicum. Appl. Environ. Microbiol. 66: 1050-1056.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1050-1056
    • Kashefi, K.1    Lovley, D.R.2
  • 11
    • 0034042695 scopus 로고    scopus 로고
    • Novel forms of anaerobic respiration of environmental relevance
    • Lovley, D. R., and J. D. Coates. 2000. Novel forms of anaerobic respiration of environmental relevance. Curr. Opin. Microbiol. 3:252-256.
    • (2000) Curr. Opin. Microbiol. , vol.3 , pp. 252-256
    • Lovley, D.R.1    Coates, J.D.2
  • 12
    • 0034305418 scopus 로고    scopus 로고
    • Geoelectric investigations in Bakreswar geothermal area, West Bengal, India
    • Majumdar, R. K., N. Majumdar, and A. L. Mukherjee. 2000. Geoelectric investigations in Bakreswar geothermal area, West Bengal, India. J. Appl. Geophys. 45:187-202.
    • (2000) J. Appl. Geophys. , vol.45 , pp. 187-202
    • Majumdar, R.K.1    Majumdar, N.2    Mukherjee, A.L.3
  • 13
    • 0025982062 scopus 로고
    • Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
    • Marchuk, D., M. Drumm, A. Saulino, and F. C. Collins. 1991. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res. 19:1154.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1154
    • Marchuk, D.1    Drumm, M.2    Saulino, A.3    Collins, F.C.4
  • 14
    • 0029992689 scopus 로고    scopus 로고
    • Growth of the facultative anaerobe Shewanella putrefaciens by elemental sulfur reduction
    • Moser, D., and K. Nealson. 1996. Growth of the facultative anaerobe Shewanella putrefaciens by elemental sulfur reduction. Appl. Environ. Microbiol. 62:2100-2105.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2100-2105
    • Moser, D.1    Nealson, K.2
  • 15
    • 0027526231 scopus 로고
    • Ferric reductase is associated with the membranes of anaerobically grown Shewanella putrefaciens MR-1
    • Myers, C., and J. Myers. 1993. Ferric reductase is associated with the membranes of anaerobically grown Shewanella putrefaciens MR-1. FEMS Microbiol. Lett. 108:15-22.
    • (1993) FEMS Microbiol. Lett. , vol.108 , pp. 15-22
    • Myers, C.1    Myers, J.2
  • 16
    • 0024219883 scopus 로고
    • Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor
    • Myers, C., and K. Nealson. 1988. Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240:1319-1321.
    • (1988) Science , vol.240 , pp. 1319-1321
    • Myers, C.1    Nealson, K.2
  • 17
    • 0035166832 scopus 로고    scopus 로고
    • Role of outer membrane cytochromes OmcA and OmcB of Shewanella putrefaciens MR-1 in the reduction of manganese dioxide
    • Myers, J. M., and C. R. Myers. 2001. Role of outer membrane cytochromes OmcA and OmcB of Shewanella putrefaciens MR-1 in the reduction of manganese dioxide. Appl. Environ. Microbiol. 67:260-269.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 260-269
    • Myers, J.M.1    Myers, C.R.2
  • 18
    • 0028132223 scopus 로고
    • Iron and manganese in anaerobic respiration: Environmental significance, physiology, and regulation
    • Nealson, K. H., and D. Saffarini. 1994. Iron and manganese in anaerobic respiration: environmental significance, physiology, and regulation. Annu. Rev. Microbiol. 48:311-343.
    • (1994) Annu. Rev. Microbiol. , vol.48 , pp. 311-343
    • Nealson, K.H.1    Saffarini, D.2
  • 19
    • 0026272684 scopus 로고
    • Isolation and identification of manganese reducing bacteria, and estimates of microbial manganese reducing potential in the Black Sea
    • Nealson, K. H., C. R. Myers, and B. Wimpee. 1991. Isolation and identification of manganese reducing bacteria, and estimates of microbial manganese reducing potential in the Black Sea. Deep Sea Res. 38:S907-S920.
    • (1991) Deep Sea Res. , vol.38
    • Nealson, K.H.1    Myers, C.R.2    Wimpee, B.3
  • 20
    • 0031670034 scopus 로고    scopus 로고
    • Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov.
    • Nogi, Y., C. Kato, and K. Horikoshi. 1998. Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. Arch. Microbiol. 170:331-338.
    • (1998) Arch. Microbiol. , vol.170 , pp. 331-338
    • Nogi, Y.1    Kato, C.2    Horikoshi, K.3
  • 21
    • 0019636849 scopus 로고
    • Corrosion of mild steel in cultures of ferric iron reducing bacteria isolated from crude oil. II. Mechanism of anodic depolarization
    • Obuekwe, C., D. Westlake, J. Plambeek, and F. Cook. 1981. Corrosion of mild steel in cultures of ferric iron reducing bacteria isolated from crude oil. II. Mechanism of anodic depolarization. Corrosion (Houston) 37:632-637.
    • (1981) Corrosion (Houston) , vol.37 , pp. 632-637
    • Obuekwe, C.1    Westlake, D.2    Plambeek, J.3    Cook, F.4
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0001164414 scopus 로고
    • Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids
    • Semple, K., and D. Westlake. 1987. Characterization of iron-reducing Alteromonas putrefaciens strains from oil field fluids. Can. J. Microbiol. 33:366-371.
    • (1987) Can. J. Microbiol. , vol.33 , pp. 366-371
    • Semple, K.1    Westlake, D.2
  • 25
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D. M. Hillis, C. Moritz, and B. K. Mable (ed.). Sinauer Associates, Inc., Sunderland, Mass.
    • Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference, p. 407-514. In D. M. Hillis, C. Moritz, and B. K. Mable (ed.), Molecular systematics. Sinauer Associates, Inc., Sunderland, Mass.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 27
    • 0032480241 scopus 로고    scopus 로고
    • Microbiological evidence for Fe(III) reduction on early Earth
    • Vargas, M., K. Kashefi, E. L. Blunt-Harris, and D. R. Lovley. 1998. Microbiological evidence for Fe(III) reduction on early Earth. Nature 395:65-67.
    • (1998) Nature , vol.395 , pp. 65-67
    • Vargas, M.1    Kashefi, K.2    Blunt-Harris, E.L.3    Lovley, D.R.4
  • 28
    • 0033888305 scopus 로고    scopus 로고
    • Purification and characterization of a common soil component which inhibits the polymerase chain reaction
    • Watson, R. J., and B. Blackwell. 2000. Purification and characterization of a common soil component which inhibits the polymerase chain reaction. Can. J. Microbiol. 46:633-642.
    • (2000) Can. J. Microbiol. , vol.46 , pp. 633-642
    • Watson, R.J.1    Blackwell, B.2
  • 29
    • 0031833974 scopus 로고    scopus 로고
    • Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan
    • Yamamoto, H., A. Hiraishi, K. Kato, H. X. Chiura, Y. Maki, and A. Shimizu. 1998. Phylogenetic evidence for the existence of novel thermophilic bacteria in hot spring sulfur-turf microbial mats in Japan. Appl. Environ. Microbiol. 64:1680-1687.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1680-1687
    • Yamamoto, H.1    Hiraishi, A.2    Kato, K.3    Chiura, H.X.4    Maki, Y.5    Shimizu, A.6
  • 30
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou, J., M. A. Bruns, and J. Tiedje. 1996. DNA recovery from soils of diverse composition. Appl. Environ. Microbiol. 62:316-322.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 316-322
    • Zhou, J.1    Bruns, M.A.2    Tiedje, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.