Application of laser capture microdissection in genetic analysis of neuroblastoma and neuroblastoma precursor cells

Cancer Letters

Volumn 197, Issue 1-2, 2003, Pages 53-61

  De Preter, Katleen ^a   Vandesompele, Jo ^a   Heimann, Pierre ^b   Kockx, Mark M ^c   Van Gele, Mireille ^a   Hoebeeck, Jasmien ^a   De Smet, Els ^a   Demarche, Martine ^d   Laureys, Geneviève ^a   Van Roy, Nadine ^a   De Paepe, Anne ^a   Speleman, Frank ^a  

^a GHENT UNIVERSITY HOSPITAL   (Belgium)

^b ERASME HOSPITAL   (Belgium)

^c MIDDELHEIM HOSPITAL   (Belgium)

^d Centre Hospitalier Regional de La Citadelle   (Belgium)

Author keywords

11q; 1p; 3p; Amplification; Comparative genomic hybridization; Deletion; Intratumoral heterogeneity; Loss of heterozygosity; Microarray; Microdissection; MYCN; Neuroblast; Neuroblastoma; Real time quantitative polymerase chain reaction

Indexed keywords

ANALYTIC METHOD; CANCER DIAGNOSIS; CANCER RESEARCH; CELL ISOLATION; CHROMOSOME 11Q; CHROMOSOME 1P; CHROMOSOME 3P; CHROMOSOME DELETION; CONFERENCE PAPER; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENETIC ANALYSIS; GENOMICS; HETEROZYGOSITY LOSS; HUMAN; LASER; LASER CAPTURE MICRODISSECTION; NEUROBLAST; NEUROBLASTOMA; NEUROBLASTOMA CELL; ONCOGENE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; STEM CELL;

EID: 0037767902     PISSN: 03043835     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0304-3835(03)00084-3     Document Type: Conference Paper

References (22)

1. Solinas-Toldo S., Lampel S., Stilgenbauer S., Nickolenko J., Benner A., Dohner H., Cremer T., Lichter P. Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances. Genes Chromosomes Cancer. 20:1997;399-407.
2. Pinkel D., Segraves R., Sudar D., Clark S., Poole I., Kowbel D., Collins C., Kuo W.L., Chen C., Zhai Y., Dairkee S.H., Ljung B.M., Gray J.W., Albertson D.G. High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays. Nat. Genet. 20:1998;207-211.
3. Schena M., Shalon D., Davis R.W., Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270:1995;467-470.
4. Lockhart D.J., Dong H., Byrne M.C., Follettie M.T., Gallo M.V., Chee M.S., Mittmann M., Wang C., Kobayashi M., Horton H., Brown E.L. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14:1996;1675-1680.
5. Bustin S.A. Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. J. Mol. Endocrinol. 25:2000;169-193.
6. Emmert-Buck M.R., Bonner R.F., Smith P.D., Chuaqui R.F., Zhuang Z., Goldstein S.R., Weiss R.A., Liotta L.A. Laser capture microdissection. Science. 274:1996;998-1001.
7. Schutze K., Becker I., Becker K.F., Thalhammer S., Stark R., Heckl W.M., Bohm M., Posl H. Cut out or poke in - the key to the world of single genes: laser micromanipulation as a valuable tool on the look-out for the origin of disease. Genet. Anal. 14:1997;1-8.
8. Maris J.M., Matthay K.K. Molecular biology of neuroblastoma. J. Clin. Oncol. 17:1999;2264-2279.
9. De Preter K., Speleman F., Combaret V., Lunec J., Laureys G., Eussen B.H., Francotte N., Board J., Pearson A.D., De Paepe A., Van Roy N., Vandesompele J. Quantification of MYCN, DDX1, and NAG gene copy number in neuroblastoma using a real-time quantitative PCR assay. Mod. Pathol. 15:2002;159-166.
10. Vandesompele J., Speleman F., Van Roy N., Laureys G., Brinskchmidt C., Christiansen H., Lampert F., Lastowska M., Bown N., Pearson A., Nicholson J.C., Ross F., Combaret V., Delattre O., Feuerstein B.G., Plantaz D. Multicentre analysis of patterns of DNA gains and losses in 204 neuroblastoma tumors: how many genetic subgroups are there? Med. Pediatr. Oncol. 36:2001;5-10.
11. Ambros P.F., Ambros I.M., Kerbl R., Luegmayr A., Rumpler S., Ladenstein R., Amann G., Kovar H., Horcher E., De Bernardi B., Michon J., Gadner H. Intratumoural heterogeneity of 1p deletions and MYCN amplification in neuroblastomas. Med. Pediatr. Oncol. 36:2001;1-4.
12. Gotoh T., Sugihara H., Matsumura T., Katsura K., Takamatsu T., Sawada T. Human neuroblastoma demonstrating clonal evolution in vivo. Genes Chromosomes Cancer. 22:1998;42-49.
13. Bertheau P., Plassa L.F., Lerebours F., de Roquancourt A., Turpin E., Lidereau R., de The H., Janin A. Allelic loss detection in inflammatory breast cancer: improvement with laser microdissection. Lab. Invest. 81:2001;1397-1402.
14. Telenius H., Pelmear A.H., Tunnacliffe A., Carter N.P., Behmel A., Ferguson-Smith M.A., Nordenskjold M., Pfragner R., Ponder B.A. Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer. 4:1992;257-263.
15. Klein C.A., Schmidt-Kittler O., Schardt J.A., Pantel K., Speicher M.R., Riethmuller G. Comparative genomic hybridization, loss of heterozygosity, and DNA sequence analysis of single cells. Proc. Natl Acad. Sci. USA. 96:1999;4494-4499.
16. Dean F.B., Hosono S., Fang L., Wu X., Faruqi A.F., Bray-Ward P., Sun Z., Zong Q., Du Y., Du J., Driscoll M., Song W., Kingsmore S.F., Egholm M., Lasken R.S. Comprehensive human genome amplification using multiple displacement amplification. Proc. Natl Acad. Sci. USA. 99:2002;5261-5266.
17. Vandesompele J., De Paepe A., Speleman F. Elimination of primer-dimer artifacts and genomic coamplification using a two-step SYBR green I real-time RT-PCR. Anal. Biochem. 303:2002;95-98.
18. Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3:2002;RESEARCH0034-1-11.
19. Van Gelder R.N., von Zastrow M.E., Yool A., Dement W.C., Barchas J.D., Eberwine J.H. Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc. Natl Acad. Sci. USA. 87:1990;1663-1667.
20. Cooper M.J., Hutchins G.M., Cohen P.S., Helman L.J., Mennie R.J., Israel M.A. Human neuroblastoma tumor cell lines correspond to the arrested differentiation of chromaffin adrenal medullary neuroblasts. Cell Growth Differ. 1:1990;149-159.
21. Gestblom C., Grynfeld A., Ora I., Ortoft E., Larsson C., Axelson H., Sandstedt B., Cserjesi P., Olson E.N., Pahlman S. The basic helix-loop-helix transcription factor dHAND, a marker gene for the developing human sympathetic nervous system, is expressed in both high- and low-stage neuroblastomas. Lab. Invest. 79:1999;67-79.
22. Devilee P., Cleton-Jansen A.M., Cornelisse C.J. Ever since Knudson. Trends Genet. 17:2001;569-573.