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Volumn , Issue , 2003, Pages 139-147

Accurate detection of very sparse sequence motifs

Author keywords

Bioinformatics; Consistency; protein evolution; Sequence alignment

Indexed keywords

AMINO ACIDS; DATA STRUCTURES; ENZYMES; GENETIC ENGINEERING;

EID: 0037701024     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/640075.640094     Document Type: Conference Paper
Times cited : (9)

References (16)
  • 1
    • 0026030641 scopus 로고
    • Database of homology-derived protein structures and the structural meaning of sequence alignment
    • Sander C, Schneider R (1991) Database of homology-derived protein structures and the structural meaning of sequence alignment. Proteins 19, 56-68.
    • (1991) Proteins , vol.19 , pp. 56-68
    • Sander, C.1    Schneider, R.2
  • 2
    • 0034695414 scopus 로고    scopus 로고
    • Identification of related proteins on family, superfamily and fold level
    • Lindahl E, Elofsson A. Identification of related proteins on family, superfamily and fold level. J Mol Biol 2000, 295:613-625.
    • (2000) J. Mol. Biol. , vol.295 , pp. 613-625
    • Lindahl, E.1    Elofsson, A.2
  • 3
    • 0035167572 scopus 로고    scopus 로고
    • A fully automatic evolutionary classification of protein folds: Dali domain dictionary version 3
    • Dietmann S, Park J, Notredame C, Heger A, Lappe M, Holm L (2001) A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3. Nucl Acids Res 29, 55-57.
    • (2001) Nucl. Acids Res. , vol.29 , pp. 55-57
    • Dietmann, S.1    Park, J.2    Notredame, C.3    Heger, A.4    Lappe, M.5    Holm, L.6
  • 4
    • 0031000649 scopus 로고    scopus 로고
    • An evolutionary treasure: Unification of a broad set of amidohydrolases related to urease
    • Holm L, Sander C (1997) An evolutionary treasure: unification of a broad set of amidohydrolases related to urease. Proteins 28, 72-82.
    • (1997) Proteins , vol.28 , pp. 72-82
    • Holm, L.1    Sander, C.2
  • 6
    • 0025878149 scopus 로고
    • Amino acid matrices from an information theoretic perspective
    • Altschul SF (1991) Amino acid matrices from an information theoretic perspective. J. Mol. Biol. 219, 555-565.
    • (1991) J. Mol. Biol. , vol.219 , pp. 555-565
    • Altschul, S.F.1
  • 7
    • 0036208872 scopus 로고    scopus 로고
    • Recent progress in multiple sequence alignment: A survey
    • Notredame C (2002) Recent progress in multiple sequence alignment: a survey. Pharmacogenomics 3, 131-144.
    • (2002) Pharmacogenomics , vol.3 , pp. 131-144
    • Notredame, C.1
  • 8
    • 0026036377 scopus 로고
    • Motif recognition and alignment for many sequences by comparison of dot-matrices
    • Vingron M, Argos P (1991) Motif recognition and alignment for many sequences by comparison of dot-matrices. J. Mol. Biol. 218, 33-43.
    • (1991) J. Mol. Biol. , vol.218 , pp. 33-43
    • Vingron, M.1    Argos, P.2
  • 9
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame C, Higgins DG, Heringa J (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302, 205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 10
    • 85010105210 scopus 로고
    • The maximum weight trace problem in multiple sequence alignment
    • Proceedings of the 4th Symposium on Combinatorial Pattern Matching, Springer, Berlin
    • Kececioglu J (1993) The maximum weight trace problem in multiple sequence alignment. In Proceedings of the 4th Symposium on Combinatorial Pattern Matching, No. 684 in Lect. Notes Comput. Sci., Springer, Berlin, pp. 106-119.
    • (1993) Lect. Notes Comput. Sci. , vol.684 , pp. 106-119
    • Kececioglu, J.1
  • 11
    • 0037881690 scopus 로고    scopus 로고
    • Meta-MEME: Motif-based hidden Markov models of protein families
    • Grundy WN, Bailey TL, Elkan CP, Baker ME (1997) Meta-MEME: motif-based hidden Markov models of protein families. CABIOS 5, 211-221.
    • (1997) CABIOS , vol.5 , pp. 211-221
    • Grundy, W.N.1    Bailey, T.L.2    Elkan, C.P.3    Baker, M.E.4
  • 12
    • 0032945593 scopus 로고    scopus 로고
    • DIALIGN2: Improvement of the segment-to-segment approach to multiple sequence alignment
    • Morgenstern B (1999) DIALIGN2: improvement of the segment-to-segment approach to multiple sequence alignment. Bioinformatics 15, 211-218.
    • (1999) Bioinformatics , vol.15 , pp. 211-218
    • Morgenstern, B.1
  • 13
    • 0029084226 scopus 로고
    • The cytidylyltransferase superfamily: Identification of the nucleotide-binding site and fold prediction
    • Bork P, Holm L, Koonin E, Sander C (1995) The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction. Proteins 22, 259-266.
    • (1995) Proteins , vol.22 , pp. 259-266
    • Bork, P.1    Holm, L.2    Koonin, E.3    Sander, C.4
  • 14
    • 0036720921 scopus 로고    scopus 로고
    • Completion and refinement of 3-D homology models with restricted molecular dynamics: Application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis
    • Flohil JA, Vriend G, Berendsen HJC (2002) Completion and refinement of 3-D homology models with restricted molecular dynamics: Application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis. Proteins 48, 593-604.
    • (2002) Proteins , vol.48 , pp. 593-604
    • Flohil, J.A.1    Vriend, G.2    Berendsen, H.J.C.3
  • 16
    • 0029587166 scopus 로고
    • A method to predict functional residues in proteins
    • Casari G, Sander C, Valencia A (1995) A method to predict functional residues in proteins. Nat Struct Biol 2, 171-178.
    • (1995) Nat. Struct. Biol. , vol.2 , pp. 171-178
    • Casari, G.1    Sander, C.2    Valencia, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.