Microarray analysis of somitogenesis reveals novel targets of different WNT signaling pathways in the somitic mesoderm

Developmental Biology

Volumn 258, Issue 1, 2003, Pages 91-104

  Buttitta, Laura ^a   Tanaka, Tetsuya S ^b   Chen, Alice E ^a   Ko, Minoru S H ^b   Fan, Chen Ming ^a  

^a GEOPHYSICAL LABORATORY   (United States)

^b NATIONAL INSTITUTE ON AGING   (United States)

Author keywords

Dermomyotome; Microarray; Presomitic mesoderm; Somite; WNT

Indexed keywords

WNT PROTEIN;

ANIMAL TISSUE; AR14 GENE; ARTICLE; CONTROLLED STUDY; DEVELOPMENT; DNA MICROARRAY; DOWN REGULATION; EMBRYO; EMBRYO DEVELOPMENT; GENE; GENE ACTIVATION; GENE EXPRESSION; GENE IDENTIFICATION; GENE TARGETING; MESODERM; MOUSE; NONHUMAN; PRIORITY JOURNAL; SELP GENE; SIGNAL TRANSDUCTION; SOMITE; TROY GENE; UPREGULATION;

EID: 0037684769     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0012-1606(03)00116-7     Document Type: Article

References (54)

1. Anbazhagan R., Tihan T., Bornman D.M., Johnston J.C., Saltz J.H., Weigering A., Piantadosi S., Gabrielson E. Classification of small cell lung cancer and pulmonary carcinoid by gene expression profiles. Cancer Res. 59:1999;5119-5122.
2. Aoyama H., Asamoto K. Determination of somite cells independence of cell differentiation and morphogenesis . Development. 104:1988;15-28.
3. Brand-Saberi B., Christ B. Evolution and development of distinct cell lineages derived from somites. Curr. Top. Dev. Biol. 48:2000;1-42.
4. Capdevila J., Tabin C., Johnson R.L. Control of dorsoventral somite patterning by Wnt-1 and beta-catenin. Dev. Biol. 193:1998;182-194.
5. Cheah K.S., Lau E.T., Au P.K., Tam P.P. Expression of the mouse alpha 1(II) collagen gene is not restricted to cartilage during development. Development. 111:1991;945-953.
6. Chiang C., Litingtung Y., Lee E., Young K.E., Corden J.L., Westphal H., Beachy P.A. Cyclopia and defective axial patterning in mice lacking Sonic hedgehog gene function. Nature. 383:1996;407-413.
7. Dietrich S., Schubert F.R., Lumsden A. Control of dorsoventral pattern in the chick paraxial mesoderm. Development. 124:1997;3895-3908.
8. Dunwoodie S.L., Henrique D., Harrison S.M., Beddington R.S. Mouse Dll3 a novel divergent Delta gene which may complement the function of other Delta homologues during early pattern formation in the mouse embryo . Development. 124:1997;3065-3076.
9. Dunwoodie S.L., Rodriguez T.A., Beddington R.S. Msg1 and Mrg1, founding members of a gene family, show distinct patterns of gene expression during mouse embryogenesis. Mech. Dev. 72:1998;27-40.
10. Eby M.T., Jasmin A., Kumar A., Sharma K., Chaudhary P.M. TAJ, a novel member of the tumor necrosis factor receptor family, activates the c-Jun N-terminal kinase pathway and mediates caspase-independent cell death. J. Biol. Chem. 275:2000;15336-15342.
11. Fan C.M., Lee C.S., Tessier-Lavigne M. A role for WNT proteins in induction of dermomyotome. Dev. Biol. 191:1997;160-165.
12. Fan C.M., Porter J.A., Chiang C., Chang D.T., Beachy P.A., Tessier-Lavigne M. Long-range sclerotome induction by sonic hedgehog direct role of the amino-terminal cleavage product and modulation by the cyclic AMP signaling pathway . Cell. 81:1995;457-465.
13. Fan C.M., Tessier-Lavigne M. Patterning of mammalian somites by surface ectoderm and notochord evidence for sclerotome induction by a hedgehog homolog . Cell. 79:1994;1175-1186.
14. Frohman M.A., Boyle M., Martin G.R. Isolation of the mouse Hox-2.9 gene analysis of embryonic expression suggests that positional information along the anterior-posterior axis is specified by mesoderm . Development. 110:1990;589-607.
15. Fu Q., Jilka R.L., Manolagas S.C., O'Brien C.A. Parathyroid hormone stimulates receptor activator of NFkappa B ligand and inhibits osteoprotegerin expression via protein kinase A activation of CREB. J. Biol. Chem. 277:2002;48868-48875.
16. Fuchs E., Merrill B.J., Jamora C., DasGupta R. At the roots of a never-ending cycle. Dev. Cell. 1:2001;13-25.
17. Galbiati F., Volonte D., Brown A.M., Weinstein D.E., Ben-Ze'ev A., Pestell R.G., Lisanti M.P. Caveolin-1 expression inhibits Wnt/beta-catenin/Lef-1 signaling by recruiting beta-catenin to caveolae membrane domains. J. Biol. Chem. 275:2000;23368-23377.
18. Gupta R., Thomas P., Beddington R.S., Rigby P.W. Isolation of developmentally regulated genes by differential display screening of cDNA libraries. Nucleic Acids Res. 26:1998;4538-4539.
19. Gustafsson M.K., Pan H., Pinney D.F., Liu Y., Lewandowski A., Epstein D.J., Emerson C.P. Jr. Myf5 is a direct target of long-range Shh signaling and Gli regulation for muscle specification. Genes Dev. 16:2002;114-126.
20. Hamilton B.A., Frankel W.N. Of mice and genome sequence. Cell. 107:2001;13-16.
21. Hedgepeth C.M., Conrad L.J., Zhang J., Huang H.C., Lee V.M., Klein P.S. Activation of the Wnt signaling pathway a molecular mechanism for lithium action . Dev. Biol. 185:1997;82-91.
22. Herrman J.L. The properties of a rat serum protein labelled by the injection of sodium selenite. Biochim. Biophys. Acta. 500:1977;61-70.
23. Huynh Q.K., Gulve E.A., Dian T. Purification and characterization of glutamine fructose 6-phosphate amidotransferase from rat liver . Arch. Biochem. Biophys. 379:2000;307-313.
24. Ikeya M., Takada S. Wnt signaling from the dorsal neural tube is required for the formation of the medial dermomyotome. Development. 125:1998;4969-4976.
25. Johnson R.L., Laufer E., Riddle R.D., Tabin C. Ectopic expression of Sonic hedgehog alters dorsal-ventral patterning of somites. Cell. 79:1994;1165-1173.
26. Kargul G.J., Dudekula D.B., Qian Y., Lim M.K., Jaradat S.A., Tanaka T.S., Carter M.G., Ko M.S. Verification and initial annotation of the NIA mouse 15K cDNA clone set. Nat. Genet. 28:2001;17-18.
27. Keynes R.J., Stern C.D. Mechanisms of vertebrate segmentation. Development. 103:1988;413-429.
28. Klein P.S., Melton D.A. A molecular mechanism for the effect of lithium on development. Proc. Natl. Acad. Sci. USA. 93:1996;8455-8459.
29. Kojima T., Morikawa Y., Copeland N.G., Gilbert D.J., Jenkins N.A., Senba E., Kitamura T. TROY, a newly identified member of the tumor necrosis factor receptor superfamily, exhibits a homology with Edar and is expressed in embryonic skin and hair follicles. J. Biol. Chem. 275:2000;20742-20747.
30. Kubota Y., Morita T., Kusakabe M., Sakakura T., Ito K. Spatial and temporal changes in chondroitin sulfate distribution in the sclerotome play an essential role in the formation of migration patterns of mouse neural crest cells. Dev. Dyn. 214:1999;55-65.
31. Kuhl M., Sheldahl L.C., Park M., Miller J.R., Moon R.T. The Wnt/Ca2+ pathway a new vertebrate Wnt signaling pathway takes shape . Trends Genet. 16:2000;279-283.
32. Li L., Yuan H., Xie W., Mao J., Caruso A.M., McMahon A., Sussman D.J., Wu D. Dishevelled proteins lead to two signaling pathways. Regulation of LEF-1 and c-Jun N-terminal kinase in mammalian cells. J. Biol. Chem. 274:1999;129-134.
33. Lin C.Y., Huang P.H., Liao W.L., Cheng H.J., Huang C.F., Kuo J.C., Patton W.A., Massenburg D., Moss J., Lee F.J. ARL4, an ARF-like protein that is developmentally regulated and localized to nuclei and nucleoli. J. Biol. Chem. 275:2000;37815-37823.
34. Malbon C.C., Wang H., Moon R.T. Wnt signaling and heterotrimeric G-proteins strange bedfellows or a classic romance? Biochem. Biophys. Res. Commun. 287:2001;589-593.
35. Marcelle C., Stark M.R., Bronner-Fraser M. Coordinate actions of BMPs, Wnts, Shh and noggin mediate patterning of the dorsal somite. Development. 124:1997;3955-3963.
36. Moschos M.P. Selenoprotein P. Cell. Mol. Life Sci. 57:2000;1836-1845.
37. Neidhardt L., Gasca S., Wertz K., Obermayr F., Worpenberg S., Lehrach H., Herrmann B.G. Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. Mech. Dev. 98:2000;77-94.
38. O'Hare M.J. Differentiation of chick embryo somites in chorioallantoic culture. J. Embryol. Exp. Morphol. 27:1972;215-228.
39. Parr B.A., Shea M.J., Vassileva G., McMahon A.P. Mouse Wnt genes exhibit discrete domains of expression in the early embryonic CNS and limb buds. Development. 119:1993;247-261.
40. Perkinson R.A., Norton P.A. Expression of the mouse fibronectin gene and fibronectin-lacZ transgenes during somitogenesis. Dev. Dyn. 208:1997;244-254.
41. Pourquie O., Coltey M., Teillet M.A., Ordahl C., Le Douarin N.M. Control of dorsoventral patterning of somitic derivatives by notochord and floor plate. Proc. Natl. Acad. Sci. USA. 90:1993;5242-5246.
42. Ring C., Hassell J., Halfter W. Expression pattern of collagen IX and potential role in the segmentation of the peripheral nervous system. Dev. Biol. 180:1996;41-53.
43. Schurmann A., Koling S., Jacobs S., Saftig P., Krauss S., Wennemuth G., Kluge R., Joost H.G. Reduced sperm count and normal fertility in male mice with targeted disruption of the ADP-ribosylation factor-like 4 (Arl4) gene. Mol. Cell. Biol. 22:2002;2761-2768.
44. Selleck S.B. Proteoglycans and pattern formation sugar biochemistry meets developmental genetics . Trends Genet. 16:2000;206-212.
45. Semina E.V., Altherr M.R., Murray J.C. Cloning and chromosomal localization of two novel human genes encoding LIM-domain binding factors CLIM1 and CLIM2/LDB1/NLI. Mamm. Genome. 9:1998;921-924.
46. Steinert P., Ahrens M., Gross G., Flohe L. cDNA and deduced polypeptide sequence of a mouse selenoprotein P. Biofactors. 6:1997;311-319.
47. Tajbakhsh S., Borello U., Vivarelli E., Kelly R., Papkoff J., Duprez D., Buckingham M., Cossu G. Differential activation of Myf5 and MyoD by different Wnts in explants of mouse paraxial mesoderm and the later activation of myogenesis in the absence of Myf5. Development. 125:1998;4155-4162.
48. Tanaka T.S., Jaradat S.A., Lim M.K., Kargul G.J., Wang X., Grahovac M.J., Pantano S., Sano Y., Piao Y., Nagaraja R., Doi H., Wood W.H. 3rd, Becker K.G., Ko M.S. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Proc. Natl. Acad. Sci. USA. 97:2000;9127-9132.
49. van Eeden F.J., Granato M., Schach U., Brand M., Furutani-Seiki M., Haffter P., Hammerschmidt M., Heisenberg C.P., Jiang Y.J., Kane D.A., Kelsh R.N., Mullins M.C., Odenthal J., Warga R.M., Allende M.L., Weinberg E.S., Nusslein-Volhard C. Mutations affecting somite formation and patterning in the zebrafish, Danio rerio. Development. 123:1996;153-164.
50. Weston C.R., Davis R.J. The JNK signal transduction pathway. Curr. Opin. Genet. Dev. 12:2002;14-21.
51. Wilkinson D.G. Whole mount in situ hybridization of vertebrate embryos. Wilkinson D.G. In Situ Hybridization. A Practical Approach. 1992;75-83 IRS Press, Oxford.
52. Wodarz A., Nusse R. Mechanisms of Wnt signaling in development. Annu. Rev. Cell Dev. Biol. 14:1998;59-88.
53. Yahata T., de Caestecker M.P., Lechleider R.J., Andriole S., Roberts A.B., Isselbacher K.J., Shioda T. The MSG1 non-DNA-binding transactivator binds to the p300/CBP coactivators, enhancing their functional link to the Smad transcription factors. J. Biol. Chem. 275:2000;8825-8834.
54. Yost C., Torres M., Miller J.R., Huang E., Kimelman D., Moon R.T. The axis-inducing activity, stability, and subcellular distribution of beta-catenin is regulated in Xenopus embryos by glycogen synthase kinase 3. Genes Dev. 10:1996;1443-1454.